mRNA_F-distichus_contig101693.139.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101693.139.1
Unique NamemRNA_F-distichus_contig101693.139.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101693.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101693contigF-distichus_contig101693:1678..2046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.4268947-CDS-F-distichus_contig101693:1677..20461622928932.4268947-CDS-F-distichus_contig101693:1677..2046Fucus distichus monoicousCDSF-distichus_contig101693 1678..2046 +
1690885072.0989325-CDS-F-distichus_contig101693:1677..20461690885072.0989325-CDS-F-distichus_contig101693:1677..2046Fucus distichus monoicousCDSF-distichus_contig101693 1678..2046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101693.139.1prot_F-distichus_contig101693.139.1Fucus distichus monoicouspolypeptideF-distichus_contig101693 1678..2046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101693.139.1

>prot_F-distichus_contig101693.139.1 ID=prot_F-distichus_contig101693.139.1|Name=mRNA_F-distichus_contig101693.139.1|organism=Fucus distichus monoicous|type=polypeptide|length=123bp
MILKTQTQICGRTVWNTAVPEMVVLHLSNHDAPLNKHPIHADELDQWIYV
KSLIMSTVTSTELSLDQDFNMISFQICENNRQLLISQLRDIKSEGESLIF
DIKGNPTLPIKSGELVYIFHCTP
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mRNA from alignment at F-distichus_contig101693:1678..2046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101693.139.1 ID=mRNA_F-distichus_contig101693.139.1|Name=mRNA_F-distichus_contig101693.139.1|organism=Fucus distichus monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at F-distichus_contig101693:1678..2046+ (Fucus distichus monoicous)
ATGATATTGAAAACACAAACACAGATCTGTGGCAGAACAGTCTGGAATAC
AGCTGTCCCAGAAATGGTTGTTTTACATTTATCAAATCATGATGCACCCC
TCAACAAACACCCAATCCATGCTGACGAGCTTGACCAATGGATATATGTA
AAATCTCTGATAATGTCGACGGTAACATCAACAGAACTGAGCCTAGACCA
AGACTTTAATATGATCAGCTTTCAAATTTGTGAAAACAATAGACAGCTTT
TAATATCTCAGCTTCGTGACATTAAATCAGAAGGAGAAAGCTTAATTTTT
GACATAAAAGGTAATCCCACCCTCCCAATAAAGTCAGGCGAGCTGGTATA
TATTTTTCATTGCACACCC
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Coding sequence (CDS) from alignment at F-distichus_contig101693:1678..2046+

>mRNA_F-distichus_contig101693.139.1 ID=mRNA_F-distichus_contig101693.139.1|Name=mRNA_F-distichus_contig101693.139.1|organism=Fucus distichus monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at F-distichus_contig101693:1678..2046+ (Fucus distichus monoicous)
ATGATATTGAAAACACAAACACAGATCTGTGGCAGAACAGTCTGGAATAC
AGCTGTCCCAGAAATGGTTGTTTTACATTTATCAAATCATGATGCACCCC
TCAACAAACACCCAATCCATGCTGACGAGCTTGACCAATGGATATATGTA
AAATCTCTGATAATGTCGACGGTAACATCAACAGAACTGAGCCTAGACCA
AGACTTTAATATGATCAGCTTTCAAATTTGTGAAAACAATAGACAGCTTT
TAATATCTCAGCTTCGTGACATTAAATCAGAAGGAGAAAGCTTAATTTTT
GACATAAAAGGTAATCCCACCCTCCCAATAAAGTCAGGCGAGCTGGTATA
TATTTTTCATTGCACACCCATGATATTGAAAACACAAACACAGATCTGTG
GCAGAACAGTCTGGAATACAGCTGTCCCAGAAATGGTTGTTTTACATTTA
TCAAATCATGATGCACCCCTCAACAAACACCCAATCCATGCTGACGAGCT
TGACCAATGGATATATGTAAAATCTCTGATAATGTCGACGGTAACATCAA
CAGAACTGAGCCTAGACCAAGACTTTAATATGATCAGCTTTCAAATTTGT
GAAAACAATAGACAGCTTTTAATATCTCAGCTTCGTGACATTAAATCAGA
AGGAGAAAGCTTAATTTTTGACATAAAAGGTAATCCCACCCTCCCAATAA
AGTCAGGCGAGCTGGTATATATTTTTCATTGCACACCC
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