mRNA_F-distichus_contig101621.136.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101621.136.1
Unique NamemRNA_F-distichus_contig101621.136.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: A0A0K2TJY1_LEPSM (PH domain-containing protein (Fragment) n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TJY1_LEPSM)

HSP 1 Score: 140 bits (352), Expect = 1.760e-39
Identity = 59/95 (62.11%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    7 AVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQ 291
             +++GLLW Q+DK FSRWKERFFI TKDY +CF+K SSKLTEMG F+FK+KL D +   LLD+RGYLTICIN +++G++YLR+  GI++WF+++Q
Sbjct:   23 VLQRGLLWQQRDKFFSRWKERFFILTKDYLNCFRKGSSKLTEMGGFIFKLKLTDIESVDLLDKRGYLTICINIVKEGKIYLRRPEGIKEWFHSLQ 117          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: UPI000C78B008 (uncharacterized protein LOC111701003 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78B008)

HSP 1 Score: 138 bits (347), Expect = 3.960e-39
Identity = 58/96 (60.42%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    4 QAVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQ 291
            QAV KG+LW Q+D+LFSRWKER+ + T+DY HCFK+ +++ +EMG+F+FKVKLV  +G +L+D+RGYLT+C+  LR+GR+YLR   GIRDWF  IQ
Sbjct:   70 QAVRKGVLWQQRDRLFSRWKERYIVLTRDYLHCFKRVTNRSSEMGDFIFKVKLVQLEGVTLIDKRGYLTVCLCILREGRIYLRSAHGIRDWFQAIQ 165          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: A0A553P267_TIGCA (PH domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P267_TIGCA)

HSP 1 Score: 143 bits (360), Expect = 6.090e-38
Identity = 61/93 (65.59%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   16 KGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQV 294
            KGLLW Q+DKLFSRWKER+FI TKDY HCFKK SS++TEMG F+FK+KL+D D   LLD+RGYLTICI+ L++G++YLR+  GI++W+ T+Q 
Sbjct:  100 KGLLWQQRDKLFSRWKERYFILTKDYFHCFKKGSSRMTEMGGFIFKLKLLDIDSVDLLDKRGYLTICISLLKEGKIYLRRPEGIKEWYTTLQT 192          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: A0A0K2TR05_LEPSM (PH domain-containing protein (Fragment) n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TR05_LEPSM)

HSP 1 Score: 136 bits (343), Expect = 1.480e-35
Identity = 58/97 (59.79%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    1 KQAVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQ 291
            K  ++KGLLW Q+DKLFSRWKER+FI T DY HCFK+ +S++TEMGEF+FK+K  + +   LLD+RGYLTICI+  RDG++YLRK  GIR+W++ ++
Sbjct:  276 KSTLKKGLLWQQRDKLFSRWKERYFILTTDYLHCFKRRTSRITEMGEFIFKIKCGEVEDVELLDKRGYLTICISLPRDGKVYLRKTDGIREWYSLLK 372          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: A0A0K2VH57_LEPSM (PH domain-containing protein (Fragment) n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VH57_LEPSM)

HSP 1 Score: 129 bits (325), Expect = 2.650e-35
Identity = 53/95 (55.79%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    7 AVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQ 291
             ++KGLLW Q+DKLFSRWKERFFI TKDY  CF++ SS+++EMG F+F++KL++ +   ++D+RGYLTI ++  +DG++ LRK  GIRDWFN ++
Sbjct:   52 TLKKGLLWQQRDKLFSRWKERFFILTKDYLQCFRRGSSRISEMGAFIFRIKLIEVEEVEIIDKRGYLTISLSMGKDGKVLLRKPDGIRDWFNILK 146          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: UPI001AE8ECB3 (uncharacterized protein LOC121130150 isoform X1 n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8ECB3)

HSP 1 Score: 129 bits (325), Expect = 1.260e-33
Identity = 53/95 (55.79%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    7 AVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQ 291
             ++KGLLW Q+DKLFSRWKERFFI TKDY  CF++ SS+++EMG F+F++KL++ +   ++D+RGYLTI ++  +DG++ LRK  GIRDWFN ++
Sbjct:  158 TLKKGLLWQQRDKLFSRWKERFFILTKDYLQCFRRGSSRISEMGAFIFRIKLIEVEEVEIIDKRGYLTISLSMGKDGKVLLRKPDGIRDWFNILK 252          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: A0A553P4M6_TIGCA (PH domain-containing protein (Fragment) n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P4M6_TIGCA)

HSP 1 Score: 125 bits (315), Expect = 2.660e-32
Identity = 54/95 (56.84%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    7 AVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQ 291
            A+ KGLLW Q+DK+FSRWKERFFI T DY  CFKK SS++TEMG F+FK+KL + +   L+D++GYLT+ ++  ++GR+ LRK  GIR+WF +I+
Sbjct:   83 ALRKGLLWQQRDKIFSRWKERFFILTPDYLQCFKKGSSRMTEMGGFIFKLKLAEIEEVELVDKKGYLTVALSFHKEGRMLLRKPEGIREWFQSIK 177          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: UPI001AE2FEAD (uncharacterized protein LOC121130089 isoform X1 n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE2FEAD)

HSP 1 Score: 127 bits (320), Expect = 3.480e-32
Identity = 56/98 (57.14%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    1 KQAVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDS-SKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQ 291
            K  ++KGLLW QKDK+FSRWKERFFI TKDY  CFKK++ S+L+EMG F+FK+KL + +   L+D++GYLT+C++  +DG++ LRK+ GIRDWF+ ++
Sbjct:  398 KTTLKKGLLWQQKDKIFSRWKERFFILTKDYLQCFKKETNSRLSEMGGFIFKLKLSEVELVELVDKKGYLTVCLSLPKDGKVLLRKNEGIRDWFSLLK 495          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: A0A553P4Y8_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P4Y8_TIGCA)

HSP 1 Score: 124 bits (312), Expect = 3.850e-31
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    7 AVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQV 294
             + KGL+W Q+DK+FSRWKERFFI T+DY  CFKK SS++TEMG F+FK+KL D +   LLD++GYLT+ +   ++G++ LRK  GIR+WF T++V
Sbjct:  285 TICKGLMWQQRDKIFSRWKERFFILTQDYLQCFKKGSSRMTEMGGFIFKLKLSDVNEVELLDKKGYLTVSLLLNKEGKILLRKPEGIREWFATLKV 380          
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Match: A0A553P4W5_TIGCA (PH domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P4W5_TIGCA)

HSP 1 Score: 121 bits (303), Expect = 1.270e-30
Identity = 47/96 (48.96%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    7 AVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLFKVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQV 294
             ++KGL+W Q+D+LFSRWKER+F+ +KDY  C+K+ SS+++EMG F+FK+KL + +   LLD+RGYLT+ +   ++G++ LRK  GIR+WF  ++ 
Sbjct:   34 CIKKGLMWQQRDRLFSRWKERYFVLSKDYLQCYKRGSSRISEMGGFIFKIKLAEIEDVELLDKRGYLTVSLTVAKEGKVLLRKPEGIREWFEALKT 129          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101621.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K2TJY1_LEPSM1.760e-3962.11PH domain-containing protein (Fragment) n=1 Tax=Le... [more]
UPI000C78B0083.960e-3960.42uncharacterized protein LOC111701003 n=1 Tax=Euryt... [more]
A0A553P267_TIGCA6.090e-3865.59PH domain-containing protein n=1 Tax=Tigriopus cal... [more]
A0A0K2TR05_LEPSM1.480e-3559.79PH domain-containing protein (Fragment) n=3 Tax=Le... [more]
A0A0K2VH57_LEPSM2.650e-3555.79PH domain-containing protein (Fragment) n=2 Tax=Le... [more]
UPI001AE8ECB31.260e-3355.79uncharacterized protein LOC121130150 isoform X1 n=... [more]
A0A553P4M6_TIGCA2.660e-3256.84PH domain-containing protein (Fragment) n=1 Tax=Ti... [more]
UPI001AE2FEAD3.480e-3257.14uncharacterized protein LOC121130089 isoform X1 n=... [more]
A0A553P4Y8_TIGCA3.850e-3156.25Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A553P4W5_TIGCA1.270e-3048.96PH domain-containing protein n=1 Tax=Tigriopus cal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101621contigF-distichus_contig101621:1121..1545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score111.7
Seed ortholog evalue2e-22
Seed eggNOG ortholog121225.PHUM395920-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2D4NF@1,2S52Y@2759,3A5U7@33154,3BTPN@33208,3DABK@33213,3EDC5@33342,3SN8U@50557,420NB@6656
COG Functional cat.S
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons3
Model size300
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101621.136.1prot_F-distichus_contig101621.136.1Fucus distichus monoicouspolypeptideF-distichus_contig101621 1121..1545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.2859333-CDS-F-distichus_contig101621:1120..11761622928932.2859333-CDS-F-distichus_contig101621:1120..1176Fucus distichus monoicousCDSF-distichus_contig101621 1121..1176 +
1690885072.017337-CDS-F-distichus_contig101621:1120..11761690885072.017337-CDS-F-distichus_contig101621:1120..1176Fucus distichus monoicousCDSF-distichus_contig101621 1121..1176 +
1622928932.296256-CDS-F-distichus_contig101621:1255..13521622928932.296256-CDS-F-distichus_contig101621:1255..1352Fucus distichus monoicousCDSF-distichus_contig101621 1256..1352 +
1690885072.0314667-CDS-F-distichus_contig101621:1255..13521690885072.0314667-CDS-F-distichus_contig101621:1255..1352Fucus distichus monoicousCDSF-distichus_contig101621 1256..1352 +
1622928932.3103876-CDS-F-distichus_contig101621:1398..15451622928932.3103876-CDS-F-distichus_contig101621:1398..1545Fucus distichus monoicousCDSF-distichus_contig101621 1399..1545 +
1690885072.0417297-CDS-F-distichus_contig101621:1398..15451690885072.0417297-CDS-F-distichus_contig101621:1398..1545Fucus distichus monoicousCDSF-distichus_contig101621 1399..1545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101621.136.1

>prot_F-distichus_contig101621.136.1 ID=prot_F-distichus_contig101621.136.1|Name=mRNA_F-distichus_contig101621.136.1|organism=Fucus distichus monoicous|type=polypeptide|length=100bp
KQAVEKGLLWHQKDKLFSRWKERFFIPTKDYCHCFKKDSSKLTEMGEFLF
KVKLVDTDGFSLLDERGYLTICINQLRDGRLYLRKHGGIRDWFNTIQVR*
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mRNA from alignment at F-distichus_contig101621:1121..1545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101621.136.1 ID=mRNA_F-distichus_contig101621.136.1|Name=mRNA_F-distichus_contig101621.136.1|organism=Fucus distichus monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at F-distichus_contig101621:1121..1545+ (Fucus distichus monoicous)
AAACAGGCTGTGGAGAAGGGTCTGCTGTGGCACCAGAAGGACAAGCTGTT CTCAAGGTTAGCAGTCTCCATTTGCATATTTAATTTAAATTCCATGATTA AATTTAGTTTTCAACTATGGCCATTTTATATTCAGGTGGAAGGAGAGGTT TTTCATCCCAACGAAAGACTATTGCCATTGCTTCAAGAAGGACTCTTCAA AACTAACTGAGATGGGAGAATTCTTATTCAAGGTATAACATACTGTATTC TTACCACTGTATTCATGCATATTTCTAGGTGAAACTTGTTGACACAGATG GTTTCTCTCTTCTGGACGAGAGAGGCTACCTGACCATCTGTATTAACCAG CTCAGAGATGGTAGGCTATACTTGAGGAAGCATGGGGGTATAAGAGATTG GTTTAATACTATTCAGGTGAGATAA
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Coding sequence (CDS) from alignment at F-distichus_contig101621:1121..1545+

>mRNA_F-distichus_contig101621.136.1 ID=mRNA_F-distichus_contig101621.136.1|Name=mRNA_F-distichus_contig101621.136.1|organism=Fucus distichus monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at F-distichus_contig101621:1121..1545+ (Fucus distichus monoicous)
AAACAGGCTGTGGAGAAGGGTCTGCTGTGGCACCAGAAGGACAAGCTGTT
CTCAAGAAACAGGCTGTGGAGAAGGGTCTGCTGTGGCACCAGAAGGACAA
GCTGTTCTCAAGGTGGAAGGAGAGGTTTTTCATCCCAACGAAAGACTATT
GCCATTGCTTCAAGAAGGACTCTTCAAAACTAACTGAGATGGGAGAATTC
TTATTCAAGGTGGAAGGAGAGGTTTTTCATCCCAACGAAAGACTATTGCC
ATTGCTTCAAGAAGGACTCTTCAAAACTAACTGAGATGGGAGAATTCTTA
TTCAAGGTGAAACTTGTTGACACAGATGGTTTCTCTCTTCTGGACGAGAG
AGGCTACCTGACCATCTGTATTAACCAGCTCAGAGATGGTAGGCTATACT
TGAGGAAGCATGGGGGTATAAGAGATTGGTTTAATACTATTCAGGTGAGA
TAAGTGAAACTTGTTGACACAGATGGTTTCTCTCTTCTGGACGAGAGAGG
CTACCTGACCATCTGTATTAACCAGCTCAGAGATGGTAGGCTATACTTGA
GGAAGCATGGGGGTATAAGAGATTGGTTTAATACTATTCAGGTGAGATAA
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