mRNA_F-distichus_contig101617.132.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101617.132.1
Unique NamemRNA_F-distichus_contig101617.132.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101617.132.1 vs. uniprot
Match: A0A6H5JZJ2_9PHAE (S5A_REDUCTASE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZJ2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.960e-35
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 KGVLLSMVMSLDGFRVREHFVSYGYGFSVAFQAAAAAWLFREGLHTMSALHAAGLVAYGLRLVIFCRWRDSLACFRERKR 240
            +GVLLSMV S+DGFR+REHFVSYGYGFSVA QAA AAWLFR+ LHT+SALHAAGLVAYGLRL  FC WRD+L+CF+ R++
Sbjct:  126 QGVLLSMVTSIDGFRIREHFVSYGYGFSVALQAAGAAWLFRDKLHTLSALHAAGLVAYGLRLASFCGWRDTLSCFQNRRK 205
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101617.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZJ2_9PHAE1.960e-3577.50S5A_REDUCTASE domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101617contigF-distichus_contig101617:111..1752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.3e-26
Seed eggNOG ortholog2880.D8LD60
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors
EggNOG OGsCOG3752@1,KOG4650@2759
Ec32 ortholog descriptionProtein of unknown function DUF1295
Ec32 orthologEc-11_000580.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size243
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101617.132.1prot_F-distichus_contig101617.132.1Fucus distichus monoicouspolypeptideF-distichus_contig101617 129..1752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.0458584-UTR-F-distichus_contig101617:110..1281622928932.0458584-UTR-F-distichus_contig101617:110..128Fucus distichus monoicousUTRF-distichus_contig101617 111..128 +
1690885071.9288268-UTR-F-distichus_contig101617:110..1281690885071.9288268-UTR-F-distichus_contig101617:110..128Fucus distichus monoicousUTRF-distichus_contig101617 111..128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.058061-CDS-F-distichus_contig101617:128..2061622928932.058061-CDS-F-distichus_contig101617:128..206Fucus distichus monoicousCDSF-distichus_contig101617 129..206 +
1690885071.9403727-CDS-F-distichus_contig101617:128..2061690885071.9403727-CDS-F-distichus_contig101617:128..206Fucus distichus monoicousCDSF-distichus_contig101617 129..206 +
1622928932.0722673-CDS-F-distichus_contig101617:1605..17521622928932.0722673-CDS-F-distichus_contig101617:1605..1752Fucus distichus monoicousCDSF-distichus_contig101617 1606..1752 +
1690885071.9517431-CDS-F-distichus_contig101617:1605..17521690885071.9517431-CDS-F-distichus_contig101617:1605..1752Fucus distichus monoicousCDSF-distichus_contig101617 1606..1752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101617.132.1

>prot_F-distichus_contig101617.132.1 ID=prot_F-distichus_contig101617.132.1|Name=mRNA_F-distichus_contig101617.132.1|organism=Fucus distichus monoicous|type=polypeptide|length=75bp
MVMSLDGFRVREHFVSYGYGFSVAFQAAAAAWLFREGLHTMSALHAAGLV
AYGLRLVIFCRWRDSLACFRERKR*
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mRNA from alignment at F-distichus_contig101617:111..1752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101617.132.1 ID=mRNA_F-distichus_contig101617.132.1|Name=mRNA_F-distichus_contig101617.132.1|organism=Fucus distichus monoicous|type=mRNA|length=1642bp|location=Sequence derived from alignment at F-distichus_contig101617:111..1752+ (Fucus distichus monoicous)
AAGGGAGTGCTGCTCTCGATGGTCATGTCTCTCGATGGCTTCCGCGTGAG
GGAGCACTTCGTCAGCTACGGCTACGGCTTTTCCGTTGCCTTTCAGGTAT
GTCAATTGTATTAATAATACTAAGTAATCAAGTGTACTGCCATTAGGGTC
ATGTATTGCATGACATGACACACGTTACGATTCTGCTGTAATTTTCTTTG
CCCAGCAGCTGCAGACCCTGAAACTCCGATCGTTGATTATCGCCTTGGCG
ATCATGCTGTAGCCAGCACTGTAGCTATGCTGTAGCCAGCACTGTGCTGT
GAATATTTTGGGATTTCCCTCGTCGGTCCAGGGTTTGCGTGGTCGGGGCA
TCGTTCGCTTCTCTTTCGTGGCATGGTTTGTTTGTCATTTCAGGGTGTCT
CTCGATGGCGCCCCCTCCCCCGAGAACGCCTCGGCAGAACACCCGGACTA
GTTGCTTCAACTCAAATCGCTTTGAAATAAATGAAAGGCTGGACTAACGC
TGTTGTTTGGCGACATGAGGCGTATTTGTTAATTTTACTCTTATACCCTT
TCTCTGTTTTATTGCAAGACGTCTTTCCTTACGTTAGGCCCATTTTCACC
GAGTTATTATTATCACAAGAGGCTATCAATCCAACGTTATCCATTCTGCC
ACTGTCGTCGTAGCGGATCTATCATCTGCCCACCGCCCCCAGGCTCATGC
CCACGGCCTTCTATCCCGGTACGAGTTCAAAACACTCGTTCTTTTTGCAG
CCTTTCGATCCAAAACTGTTACTCATGATAATTCTCACGCGTTCCTTCGC
TGAAGTTCCGTCGAGACTAGAACGCGGCTCGACACCAGAGTATAAATGGC
CTAGCAGATCACTGGAACATACAGTTGACTGTTTCTGAAAGCCATCCTTA
GTAGGCACAAATTCGCTGGATTATCGTTGTCAGGAAGCACTCGCTCGGGA
TAATATTGGTTTGGCCCCGCATCGGCATGGTTCCTGAACGCTTTAACATA
GTACTAGGCGCCCGGTACGTAATTTTTTGCATCGTATGTGGAGAACCGGA
TTCAGATCTCTGAAGAATGCCACCTGCGGTCATTCGTTCTTGCGTCGCTG
AGACTATATCAGCCATGGTGACCAAAATACGCAAAACCAACCATATAATA
TATTTGCATAGGTCCATCGTTAAACTTTTTTCTTTCAACATTTTTTTTTG
TCGGCGGTCCTGAGGAGGCAAATCCCCGTGTTTATCGTTTCTTTTGGAGT
TGATTTTATCTATAAAGAACAGAGATATGCTGGGGGCGACCTACAGTATC
TGAGTGAAAACGCTTAACCTCGAAATATATACACACGCAGGCGGAATACA
AACGAAAACGCCCTCCAAAATCGATCTCACGGGTGACATCAAAGCCACGT
TTGCTATATCTTTTCCTTGCCCGAGAACGAAAAAGCCTCCGCACAAACGG
GTTTGCTTTTCGCCCCTCCTTTGCCTCATTCCTCGGTCGAAAAAGGCCGC
TGCGGCTGCCTGGTTGTTCCGCGAAGGCTTGCACACGATGTCCGCCCTCC
ATGCGGCGGGGCTCGTCGCGTACGGGCTCCGTCTGGTCATCTTCTGTCGC
TGGAGAGACTCGTTGGCGTGTTTCCGGGAGCGTAAAAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig101617:111..1752+

>mRNA_F-distichus_contig101617.132.1 ID=mRNA_F-distichus_contig101617.132.1|Name=mRNA_F-distichus_contig101617.132.1|organism=Fucus distichus monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at F-distichus_contig101617:111..1752+ (Fucus distichus monoicous)
ATGGTCATGTCTCTCGATGGCTTCCGCGTGAGGGAGCACTTCGTCAGCTA
CGGCTACGGCTTTTCCGTTGCCTTTCAGATGGTCATGTCTCTCGATGGCT
TCCGCGTGAGGGAGCACTTCGTCAGCTACGGCTACGGCTTTTCCGTTGCC
TTTCAGGCCGCTGCGGCTGCCTGGTTGTTCCGCGAAGGCTTGCACACGAT
GTCCGCCCTCCATGCGGCGGGGCTCGTCGCGTACGGGCTCCGTCTGGTCA
TCTTCTGTCGCTGGAGAGACTCGTTGGCGTGTTTCCGGGAGCGTAAAAGG
TGAGCCGCTGCGGCTGCCTGGTTGTTCCGCGAAGGCTTGCACACGATGTC
CGCCCTCCATGCGGCGGGGCTCGTCGCGTACGGGCTCCGTCTGGTCATCT
TCTGTCGCTGGAGAGACTCGTTGGCGTGTTTCCGGGAGCGTAAAAGGTGA
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