mRNA_F-distichus_contig101581.129.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101581.129.1
Unique NamemRNA_F-distichus_contig101581.129.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101581.129.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.380e-47
Identity = 67/93 (72.04%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 LKEWEPRRSGDYMKEGSKWAFGAPVGAIKGGQVDAMACLQVSEDGGIVIEWICDNPIALGIPGNAVDWLARGIEALCGKRLDLPVSMSGRAMG 279
            + EW+P+R+ DY K GSKW+FGAP+GAIKGGQVDA+ACL+VSED G+V+EWIC NP+ LGIPGNAV+WLA+GI ALCGKRLDLPV++S +A G
Sbjct:    1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARG 93
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BLAST of mRNA_F-distichus_contig101581.129.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.750e-45
Identity = 68/93 (73.12%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 LKEWEPRRSGDYMKEGSKWAFGAPVGAIKGGQVDAMACLQVSEDGGIVIEWICDNPIALGIPGNAVDWLARGIEALCGKRLDLPVSMSGRAMG 279
            + EW+P+R+ DY K GSKW+FGAP+GAIKGGQVDA+ACLQVSED G+V+EWIC NP+ LGIPGNAV+WLA+GI ALCGKRLDLPV++S +A G
Sbjct:  206 MAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARG 298
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BLAST of mRNA_F-distichus_contig101581.129.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 7.750e-32
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 LKEWEPRRSGDYMKEGSKWAFGAPVGAIKGGQVDAMACLQVSEDGGIVIEWICDNPIALGIPGNAVDWLARGIEALCGKRLDLPVSMSGRAMG 279
            +++W P R GD+ +EGS WAF APV A K G +DA+ACL+V+E+ GI I W+C+NP  LG+PGN++ WL +GIE L GKRLD+ V     A G
Sbjct:    1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTARG 93
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BLAST of mRNA_F-distichus_contig101581.129.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC)

HSP 1 Score: 103 bits (256), Expect = 1.350e-24
Identity = 42/83 (50.60%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 LKEWEPRRSGDYMKEGSKWAFGAPVGAIKGGQVDAMACLQVSEDGGIVIEWICDNPIALGIPGNAVDWLARGIEALCGKRLDL 249
            + EW+P RSG Y+ +   W FGAPVGA KGGQ+DA+ACL++SE  G+V+ +I  NP+ +G+ GNA DWL +G+  +C +RL +
Sbjct:  124 MAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGM 206
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101581.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FI60_ECTSI3.380e-4772.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMS2_9PHAE5.750e-4573.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8Z3_9STRA7.750e-3253.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4F895_VITBC1.350e-2450.60Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101581contigF-distichus_contig101581:183..952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003670.1
Exons2
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.706788-CDS-F-distichus_contig101581:182..4761622928931.706788-CDS-F-distichus_contig101581:182..476Fucus distichus monoicousCDSF-distichus_contig101581 183..476 -
1690885071.7871227-CDS-F-distichus_contig101581:182..4761690885071.7871227-CDS-F-distichus_contig101581:182..476Fucus distichus monoicousCDSF-distichus_contig101581 183..476 -
1622928931.7232778-CDS-F-distichus_contig101581:856..9521622928931.7232778-CDS-F-distichus_contig101581:856..952Fucus distichus monoicousCDSF-distichus_contig101581 857..952 -
1690885071.7988195-CDS-F-distichus_contig101581:856..9521690885071.7988195-CDS-F-distichus_contig101581:856..952Fucus distichus monoicousCDSF-distichus_contig101581 857..952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101581.129.1prot_F-distichus_contig101581.129.1Fucus distichus monoicouspolypeptideF-distichus_contig101581 183..952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101581.129.1

>prot_F-distichus_contig101581.129.1 ID=prot_F-distichus_contig101581.129.1|Name=mRNA_F-distichus_contig101581.129.1|organism=Fucus distichus monoicous|type=polypeptide|length=130bp
LKEWEPRRSGDYMKEGSKWAFGAPVGAIKGGQVDAMACLQVSEDGGIVIE
WICDNPIALGIPGNAVDWLARGIEALCGKRLDLPVSMSGRAMGMEETRAA
DGGGGSSSSSSKKRARGNGGSKGKSKKRT*
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mRNA from alignment at F-distichus_contig101581:183..952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101581.129.1 ID=mRNA_F-distichus_contig101581.129.1|Name=mRNA_F-distichus_contig101581.129.1|organism=Fucus distichus monoicous|type=mRNA|length=770bp|location=Sequence derived from alignment at F-distichus_contig101581:183..952- (Fucus distichus monoicous)
TTAAAGGAATGGGAACCTCGTCGAAGTGGGGACTACATGAAGGAAGGTTC
CAAGTGGGCCTTCGGGGCGCCCGTCGGTGCCATAAAGGGCGGCCAGGTGT
GCTTCTCTTTCCTTGACCATGAGCACCACTCGGGTCACGGGGGTATAAGT
TGAAAAACTTCGACGCCTAGTGCGCTCGTCCATGACGAGCTGTAGTACGC
GTTGATCACGTCGGCGTCAAGGCGGGCATATCGTACCGTCGGCTCTCACA
AGCGTTGGCGCCGAAATGTTTTATTTTAGGTGCTGCTGCTGAGCACTTGT
TGATGTTTCAAATCGAAAACGAATCGTAATATGTACATCGTAGTGGGCTT
AACTTATACTCAATTCGCTGATAGCTTGCGCTCGGTGGCCCAACTTGGCT
GCAACCTCTTTTTCGCGTTTTCGGCCCCTTCCTACACATTCTACCGAAAA
CACATACGACAACCCGCGCGCCCCAGGTTGACGCAATGGCATGCCTTCAG
GTTAGCGAGGATGGCGGCATCGTAATCGAGTGGATCTGCGACAACCCTAT
CGCCCTAGGCATCCCGGGAAACGCGGTCGACTGGTTGGCCCGCGGCATCG
AGGCCCTCTGCGGCAAGCGGCTGGACCTGCCCGTCAGCATGTCAGGAAGA
GCAATGGGAATGGAAGAGACGCGAGCCGCCGATGGTGGCGGCGGCAGCAG
CAGCAGCAGCAGCAAGAAGAGGGCTAGGGGCAACGGTGGCAGCAAGGGGA
AGTCCAAGAAACGAACATAG
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Coding sequence (CDS) from alignment at F-distichus_contig101581:183..952-

>mRNA_F-distichus_contig101581.129.1 ID=mRNA_F-distichus_contig101581.129.1|Name=mRNA_F-distichus_contig101581.129.1|organism=Fucus distichus monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at F-distichus_contig101581:183..952- (Fucus distichus monoicous)
TTAAAGGAATGGGAACCTCGTCGAAGTGGGGACTACATGAAGGAAGGTTC
CAAGTGGGCCTTCGGGGCGCCCGTCGGTGCCATAAAGGGCGGCCAGTTAA
AGGAATGGGAACCTCGTCGAAGTGGGGACTACATGAAGGAAGGTTCCAAG
TGGGCCTTCGGGGCGCCCGTCGGTGCCATAAAGGGCGGCCAGGTTGACGC
AATGGCATGCCTTCAGGTTAGCGAGGATGGCGGCATCGTAATCGAGTGGA
TCTGCGACAACCCTATCGCCCTAGGCATCCCGGGAAACGCGGTCGACTGG
TTGGCCCGCGGCATCGAGGCCCTCTGCGGCAAGCGGCTGGACCTGCCCGT
CAGCATGTCAGGAAGAGCAATGGGAATGGAAGAGACGCGAGCCGCCGATG
GTGGCGGCGGCAGCAGCAGCAGCAGCAGCAAGAAGAGGGCTAGGGGCAAC
GGTGGCAGCAAGGGGAAGTCCAAGAAACGAACATAGGTTGACGCAATGGC
ATGCCTTCAGGTTAGCGAGGATGGCGGCATCGTAATCGAGTGGATCTGCG
ACAACCCTATCGCCCTAGGCATCCCGGGAAACGCGGTCGACTGGTTGGCC
CGCGGCATCGAGGCCCTCTGCGGCAAGCGGCTGGACCTGCCCGTCAGCAT
GTCAGGAAGAGCAATGGGAATGGAAGAGACGCGAGCCGCCGATGGTGGCG
GCGGCAGCAGCAGCAGCAGCAGCAAGAAGAGGGCTAGGGGCAACGGTGGC
AGCAAGGGGAAGTCCAAGAAACGAACATAG
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