mRNA_F-distichus_contig101578.127.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101578.127.1
Unique NamemRNA_F-distichus_contig101578.127.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: D7G7J8_ECTSI (Nucleolar complex associated 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7J8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.890e-13
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   10 GANTFQVRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            G    +VRLLAYLRVRQMA ALPFPFVE CMK LYLAFAKRAR
Sbjct:  505 GEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRAR 547
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: W7T2Z2_9STRA (Uncharacterized protein family UPF0120 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Z2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 GANTFQVRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
             +    V+L+A+LRVRQ A  LPFPF+E C+KG YL++A+ A+
Sbjct:  411 ASEALDVKLVAFLRVRQAATVLPFPFLEHCLKGAYLSYARNAK 453
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: A0A1E7FSB6_9STRA (Noc2-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSB6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   28 VRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            VRL A+LR+RQ+A   PFPF+E C+K LYLA+A+RA+
Sbjct:  359 VRLHAFLRIRQLAMTQPFPFIEECLKKLYLAYAQRAK 395
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: A0A448Z9V8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9V8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   28 VRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            VRL A+LR+RQ+A   PFPF+E C+K LYLA+A+RA+
Sbjct:  420 VRLHAFLRIRQLAMTQPFPFIEECLKKLYLAYAQRAK 456
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: B7FQ14_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ14_PHATC)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   28 VRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            VRL A+ R+RQ+A   PFPFVE+C+K +YLA+A+RA+
Sbjct:  386 VRLNAFFRIRQLALTQPFPFVETCLKKIYLAYARRAK 422
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: A0A7S2VGJ3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VGJ3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.340e-6
Identity = 20/37 (54.05%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   28 VRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            VRL A+ R+RQ+A+  PFPF+E+C++  YLA+A+RA+
Sbjct:  441 VRLNAFFRIRQLAKTQPFPFIETCLRKTYLAYARRAK 477
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: A0A067C333_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C333_SAPPC)

HSP 1 Score: 50.1 bits (118), Expect = 8.560e-6
Identity = 19/38 (50.00%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   25 QVRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            QV +LA++RVR++A+ +PFPF+E C+K LYL++ + A+
Sbjct:  297 QVCMLAFVRVRELAQLMPFPFLELCLKALYLSYMRNAK 334
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: A0A1V9Z026_9STRA (Nucleolar complex protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z026_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 20/38 (52.63%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   25 QVRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            QV LLA++RVR++A  +PFPF+E C+K LYL++ + A+
Sbjct:  303 QVCLLAFVRVRELATLMPFPFLELCLKALYLSYMRNAK 340
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: A0A7S3PY41_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY41_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.000e-5
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   28 VRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
            VR+ ++LR+RQ+A   PFPF+E C+K +YLA+A+ A+
Sbjct:  419 VRVNSFLRIRQLALTQPFPFIEMCLKSVYLAYARSAK 455
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BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Match: A0A024GNB9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNB9_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.110e-5
Identity = 18/43 (41.86%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   10 GANTFQVRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR 138
                 Q+ LLA++R+R++A  +PFPF+E C+KGLYL + +  +
Sbjct:  347 STENHQLCLLAFVRIRELAIQIPFPFLELCLKGLYLTYMRNTK 389
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101578.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G7J8_ECTSI2.890e-1381.40Nucleolar complex associated 2 homolog n=2 Tax=Ect... [more]
W7T2Z2_9STRA1.990e-751.16Uncharacterized protein family UPF0120 n=2 Tax=Mon... [more]
A0A1E7FSB6_9STRA3.730e-762.16Noc2-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A448Z9V8_9STRA3.730e-762.16Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7FQ14_PHATC1.310e-659.46Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2VGJ3_9STRA3.340e-654.05Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A067C333_SAPPC8.560e-650.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9Z026_9STRA1.170e-552.63Nucleolar complex protein n=1 Tax=Achlya hypogyna ... [more]
A0A7S3PY41_9STRA3.000e-551.35Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A024GNB9_9STRA4.110e-541.86Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101578contigF-distichus_contig101578:487..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7G7J8
KEGG koko:K14833
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
EggNOG free text desc.domain, Protein
EggNOG OGsCOG5604@1,KOG2256@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.5221791-CDS-F-distichus_contig101578:486..6241622928931.5221791-CDS-F-distichus_contig101578:486..624Fucus distichus monoicousCDSF-distichus_contig101578 487..624 -
1690885071.6957083-CDS-F-distichus_contig101578:486..6241690885071.6957083-CDS-F-distichus_contig101578:486..624Fucus distichus monoicousCDSF-distichus_contig101578 487..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101578.127.1prot_F-distichus_contig101578.127.1Fucus distichus monoicouspolypeptideF-distichus_contig101578 487..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101578.127.1

>prot_F-distichus_contig101578.127.1 ID=prot_F-distichus_contig101578.127.1|Name=mRNA_F-distichus_contig101578.127.1|organism=Fucus distichus monoicous|type=polypeptide|length=46bp
MCVGANTFQVRLLAYLRVRQMAEALPFPFVESCMKGLYLAFAKRAR
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mRNA from alignment at F-distichus_contig101578:487..624-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101578.127.1 ID=mRNA_F-distichus_contig101578.127.1|Name=mRNA_F-distichus_contig101578.127.1|organism=Fucus distichus monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at F-distichus_contig101578:487..624- (Fucus distichus monoicous)
ATGTGTGTTGGGGCGAACACCTTCCAGGTTCGGCTGCTGGCCTATCTCCG
GGTGCGCCAGATGGCGGAAGCGTTGCCCTTCCCGTTCGTGGAGAGCTGCA
TGAAGGGGCTGTACCTTGCCTTCGCCAAGAGGGCCAGG
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Coding sequence (CDS) from alignment at F-distichus_contig101578:487..624-

>mRNA_F-distichus_contig101578.127.1 ID=mRNA_F-distichus_contig101578.127.1|Name=mRNA_F-distichus_contig101578.127.1|organism=Fucus distichus monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at F-distichus_contig101578:487..624- (Fucus distichus monoicous)
ATGTGTGTTGGGGCGAACACCTTCCAGGTTCGGCTGCTGGCCTATCTCCG
GGTGCGCCAGATGGCGGAAGCGTTGCCCTTCCCGTTCGTGGAGAGCTGCA
TGAAGGGGCTGTACCTTGCCTTCGCCAAGAGGGCCAGGATGTGTGTTGGG
GCGAACACCTTCCAGGTTCGGCTGCTGGCCTATCTCCGGGTGCGCCAGAT
GGCGGAAGCGTTGCCCTTCCCGTTCGTGGAGAGCTGCATGAAGGGGCTGT
ACCTTGCCTTCGCCAAGAGGGCCAGG
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