mRNA_F-distichus_contig101487.119.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101487.119.1
Unique NamemRNA_F-distichus_contig101487.119.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101487.119.1 vs. uniprot
Match: A0A6H5K2C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.120e-24
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = -2 
Query:    2 GDSDDDEIERQEERAKAGEAFDEVDSTGRGWVEESQFEALMEAVGTAYSVEDHKPKLLSVWREKHLE*EVFLTWYDDWLFG 244
            G+S D+E ER+EE+AKA +AF EVDS  +GWVEESQFEALMEAVGT Y+VEDHKPKLL++     LE + FL WY DWLFG
Sbjct:  659 GESGDEE-ERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLERQAFLAWYMDWLFG 738
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BLAST of mRNA_F-distichus_contig101487.119.1 vs. uniprot
Match: D8LRY5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.140e-23
Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:    2 VMVARGTAVVGDSDDDEIERQEERAKAGEAFDEVDSTGRGWVEESQFEALMEAVGTAYSVEDHKPKLLSVWREKHLE*EVFLTWYDDWLFG 274
            V V  G +  G    D  ER+  +AKA +AF EVDS  +GWVEESQFEALMEAVGT Y+VEDHKPKLL++  ++ LE + FL WY DWLFG
Sbjct: 1938 VDVGGGGSDTGSXXXDXXERRXXKAKAEKAFAEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDRRLERQAFLAWYMDWLFG 2028
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101487.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2C3_9PHAE6.120e-2467.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY5_ECTSI4.140e-2359.34N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101487contigF-distichus_contig101487:1466..2046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size581
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101487.119.1prot_F-distichus_contig101487.119.1Fucus distichus monoicouspolypeptideF-distichus_contig101487 1515..1853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.7002127-UTR-F-distichus_contig101487:1465..15141622928930.7002127-UTR-F-distichus_contig101487:1465..1514Fucus distichus monoicousUTRF-distichus_contig101487 1466..1514 +
1690885071.2495909-UTR-F-distichus_contig101487:1465..15141690885071.2495909-UTR-F-distichus_contig101487:1465..1514Fucus distichus monoicousUTRF-distichus_contig101487 1466..1514 +
1622928930.7312841-UTR-F-distichus_contig101487:1853..20461622928930.7312841-UTR-F-distichus_contig101487:1853..2046Fucus distichus monoicousUTRF-distichus_contig101487 1854..2046 +
1690885071.2773833-UTR-F-distichus_contig101487:1853..20461690885071.2773833-UTR-F-distichus_contig101487:1853..2046Fucus distichus monoicousUTRF-distichus_contig101487 1854..2046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.7160463-CDS-F-distichus_contig101487:1514..18531622928930.7160463-CDS-F-distichus_contig101487:1514..1853Fucus distichus monoicousCDSF-distichus_contig101487 1515..1853 +
1690885071.2679617-CDS-F-distichus_contig101487:1514..18531690885071.2679617-CDS-F-distichus_contig101487:1514..1853Fucus distichus monoicousCDSF-distichus_contig101487 1515..1853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101487.119.1

>prot_F-distichus_contig101487.119.1 ID=prot_F-distichus_contig101487.119.1|Name=mRNA_F-distichus_contig101487.119.1|organism=Fucus distichus monoicous|type=polypeptide|length=113bp
MLFTPYRQQLRLVVFHRVRRAHGFHEGLELRLLDPTPPCTVDFVKRLPGF
GPLLLTLNLVIIGVANHCRPSCHHHYFDHLPLSLYLQLQLEQGGAPLEPW
LPTPGLPKLKCR*
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mRNA from alignment at F-distichus_contig101487:1466..2046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101487.119.1 ID=mRNA_F-distichus_contig101487.119.1|Name=mRNA_F-distichus_contig101487.119.1|organism=Fucus distichus monoicous|type=mRNA|length=581bp|location=Sequence derived from alignment at F-distichus_contig101487:1466..2046+ (Fucus distichus monoicous)
CCCCGAATAGCCAGTCGTCGTACCACGTTAAAAACACCTCTCACTCCAAA
TGCTTTTCACGCCATACCGACAGCAGCTTCGGCTTGTGGTCTTCCACCGA
GTACGCCGTGCCCACGGCTTCCATGAGGGCCTCGAACTGCGACTCCTCGA
CCCAACCCCTCCCTGTACTGTCGACTTCGTCAAACGCCTCCCCGGCTTTG
GCCCTCTCCTCCTGACGCTCAATCTCGTCATCATCGGAGTCGCCAACCAC
TGCCGTCCCTCTTGCCACCATCACTACTTTGATCATCTGCCTTTGAGTCT
TTATCTACAACTTCAGCTGGAGCAGGGGGGTGCACCACTGGAGCCGTGGT
TGCCGACGCCGGGGCTACCGAAGCTGAAGTGTCGATAGGTGCCCCGAAAC
CGAAACGTCCGGCCGTAGGCTTCGTCGTTGGTACGACTGACACTGGAGCG
TCAGCAGGAGGGCTCCCGAACGAGAAGCCCCCGAAGGCGCTTGACATAGA
ACTTGCCTGCAACGATGTCGTGGCAGATGCCGGCGCGGGGGGAGACCCGA
AGGTGAAATTGCCTGTTTCCTTGCTCGAACC
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Coding sequence (CDS) from alignment at F-distichus_contig101487:1466..2046+

>mRNA_F-distichus_contig101487.119.1 ID=mRNA_F-distichus_contig101487.119.1|Name=mRNA_F-distichus_contig101487.119.1|organism=Fucus distichus monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at F-distichus_contig101487:1466..2046+ (Fucus distichus monoicous)
ATGCTTTTCACGCCATACCGACAGCAGCTTCGGCTTGTGGTCTTCCACCG
AGTACGCCGTGCCCACGGCTTCCATGAGGGCCTCGAACTGCGACTCCTCG
ACCCAACCCCTCCCTGTACTGTCGACTTCGTCAAACGCCTCCCCGGCTTT
GGCCCTCTCCTCCTGACGCTCAATCTCGTCATCATCGGAGTCGCCAACCA
CTGCCGTCCCTCTTGCCACCATCACTACTTTGATCATCTGCCTTTGAGTC
TTTATCTACAACTTCAGCTGGAGCAGGGGGGTGCACCACTGGAGCCGTGG
TTGCCGACGCCGGGGCTACCGAAGCTGAAGTGTCGATAGATGCTTTTCAC
GCCATACCGACAGCAGCTTCGGCTTGTGGTCTTCCACCGAGTACGCCGTG
CCCACGGCTTCCATGAGGGCCTCGAACTGCGACTCCTCGACCCAACCCCT
CCCTGTACTGTCGACTTCGTCAAACGCCTCCCCGGCTTTGGCCCTCTCCT
CCTGACGCTCAATCTCGTCATCATCGGAGTCGCCAACCACTGCCGTCCCT
CTTGCCACCATCACTACTTTGATCATCTGCCTTTGAGTCTTTATCTACAA
CTTCAGCTGGAGCAGGGGGGTGCACCACTGGAGCCGTGGTTGCCGACGCC
GGGGCTACCGAAGCTGAAGTGTCGATAG
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