mRNA_F-distichus_contig101462.116.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101462.116.1
Unique NamemRNA_F-distichus_contig101462.116.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.960e-48
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 VSLFLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTLQ 291
            VSLFL +FQLTPDEVEALSA LE DQGRRFFSAL RLK VRASCG+LVGSS QSAGFELLEQLS+HQEAAYERLYRWVQ+RCQTLEEETP ADVTLQ
Sbjct:  149 VSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQ 245
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.340e-41
Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    1 VSLFLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTLQVK 297
            VSLFL +FQLTP+EVEALSA LE DQGRRFFSAL RLK VRASCG+LVGSS QSAG        +HQEAAYERLYRWVQ+RCQTLEEETP ADVTLQV+
Sbjct:  155 VSLFLERFQLTPNEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG--------KHQEAAYERLYRWVQDRCQTLEEETPAADVTLQVR 245
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.380e-18
Identity = 57/106 (53.77%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 VSLFLRKFQLTPDEVEALSAPLEVDQ---GRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQER---CQTL--EEETPEADVTLQV 294
            V  FL  FQLTP+E   + A   +++    R FF+AL RL+   A C  LVGS  QSAGFELL+ LS+H E AYERLY WVQ R   CQ    +EETP+AD TLQV
Sbjct:  153 VERFLHTFQLTPEEAALVGAAGGLEEPAAARAFFAALARLRAAHARCTALVGS--QSAGFELLDALSRHLEGAYERLYHWVQARRVKCQEQLSDEETPQADGTLQV 256
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: UPI000719C38B (conserved oligomeric Golgi complex subunit 6-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C38B)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-17
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 VSLFLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTL 288
            V  FL +FQL P+EV+AL    +      FF ALRR+K +   C  L+ +  Q+AG E++E ++ HQEAAYERLYRW Q  C+ L  + P+ + TL
Sbjct:  138 VDAFLERFQLKPEEVKALRGTRDGSLHDNFFDALRRVKQIHDDCKVLLRTKQQTAGLEIMEAMALHQEAAYERLYRWTQSECRVLNSDLPDINATL 233
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A2C9JCY9_BIOGL (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JCY9_BIOGL)

HSP 1 Score: 84.0 bits (206), Expect = 9.590e-17
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   10 FLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTL 288
            FL KFQL PDE++ L    +      FF AL ++K + + C  L+ ++HQ+AG E++E ++ HQE+AYERLYRW Q +C+ + ++TP+    L
Sbjct:  139 FLEKFQLKPDEIKILRGTRDGGLHADFFKALAKVKQIHSDCKFLLRTNHQTAGLEIMESMALHQESAYERLYRWTQNQCRQVTQDTPDVSYLL 231
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A3S0ZXX4_ELYCH (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZXX4_ELYCH)

HSP 1 Score: 84.0 bits (206), Expect = 9.820e-17
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:   10 FLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTL 288
            FL KFQL PDE+++L    +      FF AL R+K + + C  L+ ++HQ+AG E++E ++ HQE+AYERLYRW Q +C+ + ++TP+    L
Sbjct:  140 FLDKFQLKPDEIKSLRGTRDGALQPDFFKALSRVKQIHSDCKFLLRTNHQTAGLEIMESMALHQESAYERLYRWTQNQCRLVTQDTPDVSPLL 232
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A819CNT4_9BILA (Conserved oligomeric Golgi complex subunit 6 n=19 Tax=Bdelloidea TaxID=44578 RepID=A0A819CNT4_9BILA)

HSP 1 Score: 81.6 bits (200), Expect = 6.350e-16
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   10 FLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTL 288
            F+ +FQL PDE+ AL    +     +FF+ L+R+K +   C  L+ ++ Q+ G E++EQ++ HQE+AYERLYRW+Q  C+ L  E+PE  + +
Sbjct:  145 FIERFQLKPDELNALRTTRDGFLHPQFFNVLKRVKSIHQDCKLLLRTNQQTIGLEIMEQMALHQESAYERLYRWLQSECRLLTAESPEISILI 237
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A0B7AJC3_9EUPU (Conserved oligomeric Golgi complex subunit 6 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AJC3_9EUPU)

HSP 1 Score: 81.3 bits (199), Expect = 8.670e-16
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   10 FLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTL 288
            FL KFQL P+E++ L    +      FF A+ R+K + + C  L+ ++HQ+AG E++E ++ HQE+AYERLYRW Q +C+ + ++TP+    L
Sbjct:  150 FLDKFQLRPEEIKILRGTRDGALQPEFFKAVTRVKQIHSDCKFLLRTNHQTAGLEIMESMALHQESAYERLYRWTQNQCRLVTQDTPDVSPLL 242
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A4P9W9V2_9FUNG (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W9V2_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 1.190e-15
Identity = 38/96 (39.58%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 VSLFLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTL 288
            V +FL +F LT +E+  L+ PL    G  FF +L+ L+ +   C  L+ + HQ AGFE++E ++ HQEAAYE+L+RW Q  C+++  ++PE    +
Sbjct:  139 VDVFLARFTLTDEEILVLTQPLR-PVGPEFFESLKHLQQINDDCKALLITEHQKAGFEIMESMAGHQEAAYEKLFRWAQNECRSMNRDSPEVTAAM 233
[Close]
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Match: A0A830H7M1_9CHLO (Conserved oligomeric Golgi complex subunit 6 n=4 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H7M1_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-15
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 VSLFLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGSSHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEE-ETPEADVTL 288
            V+ FL+K+QLT +EV ALS       G  FF+AL R++VV A+C +L+ + HQ AG EL++ ++ HQE+AYERL RW+Q  C+ L E E PE   +L
Sbjct:  200 VADFLQKYQLTAEEVAALSFDTP---GDAFFAALARVRVVHANCRQLLRTHHQRAGLELMDGMAAHQESAYERLCRWLQAGCRALGEVEAPEVSPSL 293
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101462.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC3_ECTSI6.960e-4888.66Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6H5LBT5_9PHAE7.340e-4178.79Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A836CBI3_9STRA4.380e-1853.77Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
UPI000719C38B1.110e-1744.79conserved oligomeric Golgi complex subunit 6-like ... [more]
A0A2C9JCY9_BIOGL9.590e-1741.94Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A3S0ZXX4_ELYCH9.820e-1743.01Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A819CNT4_9BILA6.350e-1640.86Conserved oligomeric Golgi complex subunit 6 n=19 ... [more]
A0A0B7AJC3_9EUPU8.670e-1640.86Conserved oligomeric Golgi complex subunit 6 (Frag... [more]
A0A4P9W9V2_9FUNG1.190e-1539.58Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A830H7M1_9CHLO1.200e-1548.45Conserved oligomeric Golgi complex subunit 6 n=4 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101462contigF-distichus_contig101462:1375..2064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D8LSC3
Preferred nameCOG6
KEGG koko:K20293
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG3758@1,KOG3758@2759
Ec32 ortholog descriptionConserved oligomeric Golgi complex subunit 6
Ec32 orthologEc-21_003170.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.4219856-CDS-F-distichus_contig101462:1374..15131622928930.4219856-CDS-F-distichus_contig101462:1374..1513Fucus distichus monoicousCDSF-distichus_contig101462 1375..1513 -
1690885071.127774-CDS-F-distichus_contig101462:1374..15131690885071.127774-CDS-F-distichus_contig101462:1374..1513Fucus distichus monoicousCDSF-distichus_contig101462 1375..1513 -
1622928930.4408867-CDS-F-distichus_contig101462:1897..20641622928930.4408867-CDS-F-distichus_contig101462:1897..2064Fucus distichus monoicousCDSF-distichus_contig101462 1898..2064 -
1690885071.1437967-CDS-F-distichus_contig101462:1897..20641690885071.1437967-CDS-F-distichus_contig101462:1897..2064Fucus distichus monoicousCDSF-distichus_contig101462 1898..2064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101462.116.1prot_F-distichus_contig101462.116.1Fucus distichus monoicouspolypeptideF-distichus_contig101462 1375..2064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101462.116.1

>prot_F-distichus_contig101462.116.1 ID=prot_F-distichus_contig101462.116.1|Name=mRNA_F-distichus_contig101462.116.1|organism=Fucus distichus monoicous|type=polypeptide|length=102bp
VSLFLRKFQLTPDEVEALSAPLEVDQGRRFFSALRRLKVVRASCGKLVGS
SHQSAGFELLEQLSQHQEAAYERLYRWVQERCQTLEEETPEADVTLQVKS
SV
back to top

mRNA from alignment at F-distichus_contig101462:1375..2064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101462.116.1 ID=mRNA_F-distichus_contig101462.116.1|Name=mRNA_F-distichus_contig101462.116.1|organism=Fucus distichus monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at F-distichus_contig101462:1375..2064- (Fucus distichus monoicous)
GTATCTCTTTTCCTCCGAAAGTTTCAGCTCACTCCGGACGAGGTGGAAGC
GCTCTCGGCGCCGCTGGAGGTGGATCAGGGACGGCGATTCTTCTCGGCGC
TTCGGCGGCTTAAGGTCGTGAGGGCGTCGTGCGGCAAGCTTGTCGGGTCC
AGCCACCAGAGCGCGGGGTGAGATGTCCCACCAACAAGAAATCAAGGGCT
CGAAACCGCCCTACGTACCTAAGAGATAAGCGAGGTGACCGCTTCGCTGT
CCATGTGCTGCTTACCTTCGTATTCACCCTCTCTGGTCCCCCGCCTACCA
ACTATAACTATATAGAGCTTCAGAGCAAGTCGAGCATATGTTCTTGCTTT
GTTCTTTCGAGTACACATCACGCGATGATGACGTCACACAGGTGATTCAA
CACGATGCGGTACGTACTCGTCATGGGTGTCGTAACGTTTCGTGTGCCGT
CGTATTATGCATGCTGACTACTGCTGTTGTACCCAAGACGGGCGTTTGTT
TTGTTGTTGTGATTTGTTGTTCTGTTTTCCCTCGACCCCCTCTGGGATAA
GGTTCGAGCTGCTGGAACAGCTTAGCCAGCACCAGGAGGCGGCGTACGAG
AGGCTGTACCGCTGGGTGCAGGAACGATGCCAGACGCTGGAGGAGGAGAC
CCCTGAGGCGGACGTGACACTCCAGGTGAAAAGCTCCGTT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig101462:1375..2064-

>mRNA_F-distichus_contig101462.116.1 ID=mRNA_F-distichus_contig101462.116.1|Name=mRNA_F-distichus_contig101462.116.1|organism=Fucus distichus monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at F-distichus_contig101462:1375..2064- (Fucus distichus monoicous)
GTATCTCTTTTCCTCCGAAAGTTTCAGCTCACTCCGGACGAGGTGGAAGC
GCTCTCGGCGCCGCTGGAGGTGGATCAGGGACGGCGATTCTTCTCGGCGC
TTCGGCGGCTTAAGGTCGTGAGGGCGTCGTGCGGCAAGCTTGTCGGGTCC
AGCCACCAGAGCGCGGGGTATCTCTTTTCCTCCGAAAGTTTCAGCTCACT
CCGGACGAGGTGGAAGCGCTCTCGGCGCCGCTGGAGGTGGATCAGGGACG
GCGATTCTTCTCGGCGCTTCGGCGGCTTAAGGTCGTGAGGGCGTCGTGCG
GCAAGCTTGTCGGGTCCAGCCACCAGAGCGCGGGGTTCGAGCTGCTGGAA
CAGCTTAGCCAGCACCAGGAGGCGGCGTACGAGAGGCTGTACCGCTGGGT
GCAGGAACGATGCCAGACGCTGGAGGAGGAGACCCCTGAGGCGGACGTGA
CACTCCAGGTGAAAAGCTCCGTTGTTCGAGCTGCTGGAACAGCTTAGCCA
GCACCAGGAGGCGGCGTACGAGAGGCTGTACCGCTGGGTGCAGGAACGAT
GCCAGACGCTGGAGGAGGAGACCCCTGAGGCGGACGTGACACTCCAGGTG
AAAAGCTCCGTT
back to top