mRNA_F-distichus_contig101438.113.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101438.113.1
Unique NamemRNA_F-distichus_contig101438.113.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: D8LTV6_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.140e-66
Identity = 102/128 (79.69%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAVLSRGGKA+DLTEDHKPNAPRE+ERIYR+  + +TWEGFE S+GLQIE TGVYR+NG+LAVARAIGD+D RPW+S E EI+TI++ RETDQFVILASDGLWDVMSSEEAVQYVH+VMGGA+G G+E
Sbjct:  157 RAVLSRGGKALDLTEDHKPNAPREMERIYRHDGM-VTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLSAEVEIKTIDLKRETDQFVILASDGLWDVMSSEEAVQYVHAVMGGAMGSGKE 283          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 1.240e-64
Identity = 102/128 (79.69%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAVLSRGGKA+DLTEDHKPNAPRE+ERIYR+  + +TWEGFE S+GLQIE TGVYR+NG+LAVARAIGD+D RPW+S E EI+TI++ RETDQFVILASDGLWDVMSSEEAVQYVH+VMGGA+G G+E
Sbjct:  351 RAVLSRGGKALDLTEDHKPNAPREMERIYRHRGM-VTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLSAEVEIKTIDLKRETDQFVILASDGLWDVMSSEEAVQYVHAVMGGAMGSGKE 477          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A835Z7U5_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.730e-44
Identity = 79/128 (61.72%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAVL R GKAV++T+DHKPNA  EL+RI      ++ W GF   +G  IE TGVYR+NGNLAVARAIGD   RP+VSGE EIR++ ++ E DQF+I+A+DGLWDVM+S+E VQYV +VMGGA+G  RE
Sbjct:  178 RAVLCRRGKAVEITKDHKPNATAELDRI-EALGGNVRWFGFIDPEGRPIEGTGVYRINGNLAVARAIGDSSERPFVSGECEIRSMPMDHEGDQFIIIATDGLWDVMTSDEVVQYVQAVMGGAMGALRE 304          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A8K1C3Y4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3Y4_PYTOL)

HSP 1 Score: 145 bits (367), Expect = 1.270e-40
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAV+SRGG+ V+LT DHKPN P EL RI +     + W G+  +QG  IE  G YR+NGNLAVARAIGD D RP+VSGE EI+  + +   D+F+++ASDGLWDV +S+EAV +VH V+ G +G GRE
Sbjct:  108 RAVMSRGGQVVELTRDHKPNDPIELTRIQK-LGGSVKWHGYVDAQGEPIEPYGAYRINGNLAVARAIGDRDLRPYVSGEVEIKQFDRDFTKDEFIVIASDGLWDVFTSDEAVTFVHDVLNGEVG-GRE 233          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A0P1AYI9_PLAHL (Protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYI9_PLAHL)

HSP 1 Score: 147 bits (372), Expect = 6.210e-40
Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAVL R G AV+LT DHKPN P+E  RI  +    + W G+  +QG  IE  G YRVNGNLAVARAIGD D RP+V+GEAEIR  +I  + D+F+++ASDGLWDV +S E +++VH VM G LG GRE
Sbjct:  271 RAVLCRAGNAVELTRDHKPNDPQERARI-ESLGGRVQWFGYVDAQGEPIEPYGAYRVNGNLAVARAIGDRDSRPFVNGEAEIRQYDIEYDKDEFIVIASDGLWDVFTSSEVIEFVHDVMSGELG-GRE 396          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A2D4CJK3_PYTIN (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJK3_PYTIN)

HSP 1 Score: 142 bits (357), Expect = 1.760e-39
Identity = 72/128 (56.25%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAV+SRGG+ V+LT DHKPN P E +RI      ++ W G+  +QG+ IE  G  RVNGN AVARAIGD D RP+V G+ EI+  E + + D+F++LASDGLWDV +SEEAV +VH V+ G LG GRE
Sbjct:  108 RAVMSRGGQVVELTRDHKPNDPVERQRI-EALGGNVRWYGYVDAQGVPIEPYGAXRVNGNXAVARAIGDSDLRPFVXGDVEIKRFERDFDKDEFIVLASDGLWDVFTSEEAVTFVHDVLRGELG-GRE 233          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A7S1UJR9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJR9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.370e-39
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAVLSR GKAV+LT DHKPNA RE  R+  +    + W G+  ++G  ++ TG +R+NGNLAV+RA GD   RP+VSGE E+++ E   + DQF+I+ASDGLWDVMSS EAVQYV +++ G++G  RE
Sbjct:  160 RAVLSRKGKAVELTSDHKPNAARERRRV-EDLGGAVKWFGYYDTEGRPVKGTGCWRINGNLAVSRAFGDKYDRPYVSGECELKSFEYREDEDQFIIVASDGLWDVMSSSEAVQYVQTMLTGSVGALRE 286          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A7S2RHS5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHS5_9STRA)

HSP 1 Score: 146 bits (369), Expect = 8.580e-39
Identity = 72/128 (56.25%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            R VLSR G AV+LTEDHKPN   E  RI ++    + W GF +  G  +E TGVYRVNGNLAVARA+GD   +P++S E ++R   ++ E DQF+I+A+DGLWDVM+SEEAV YVHSVM  ++G  RE
Sbjct:  370 RVVLSRRGTAVELTEDHKPNCAAEASRI-KSLGGEVVWHGFYNKDGTPMEGTGVYRVNGNLAVARAVGDRTEKPYISAEPDVRITRVDPEKDQFLIVATDGLWDVMTSEEAVGYVHSVMADSVGAVRE 496          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: A0A6A3LFN5_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LFN5_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.070e-38
Identity = 74/128 (57.81%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAVL R G AV+LT DHKPN P+E  RI  +    + W G+  +QG  IE  G YRVNGNLAVARAIGD D RP+V GEAEIR  E+  + D+F+++ASDGLWDV +S E V++V  VM G LG GRE
Sbjct:  260 RAVLCRSGDAVELTRDHKPNDPQERARI-ESLGGRVQWYGYVDAQGEPIEPYGAYRVNGNLAVARAIGDRDSRPFVIGEAEIRQYELEYDKDEFIVIASDGLWDVFTSSEVVEFVQDVMSGELG-GRE 385          
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Match: D0MVZ1_PHYIT (Protein phosphatase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MVZ1_PHYIT)

HSP 1 Score: 147 bits (371), Expect = 1.450e-38
Identity = 76/128 (59.38%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIEETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASDGLWDVMSSEEAVQYVHSVMGGALGVGRE 384
            RAVL RGG  VDLT DHKPN P+E  RI  +    + W G+  +QG  IE  G YRVNGNLAVARAIGD D RP+V GEAEIR  +I  + D+F++LASDGLWDV +S E V++V  VM G LG GRE
Sbjct:  271 RAVLCRGGNTVDLTRDHKPNDPQERARI-ESLGGRVQWYGYVDAQGEPIEPYGAYRVNGNLAVARAIGDRDSRPFVIGEAEIRQYDIEYDKDEFIVLASDGLWDVFTSSEVVEFVQDVMSGELG-GRE 396          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101438.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTV6_ECTSI1.140e-6679.69PPM-type phosphatase domain-containing protein n=1... [more]
A0A6H5KKR9_9PHAE1.240e-6479.69PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z7U5_9STRA1.730e-4461.72Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A8K1C3Y4_PYTOL1.270e-4056.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AYI9_PLAHL6.210e-4057.81Protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
A0A2D4CJK3_PYTIN1.760e-3956.25PPM-type phosphatase domain-containing protein (Fr... [more]
A0A7S1UJR9_9STRA2.370e-3954.69Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RHS5_9STRA8.580e-3956.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A3LFN5_9STRA1.070e-3857.81PPM-type phosphatase domain-containing protein n=2... [more]
D0MVZ1_PHYIT1.450e-3859.38Protein phosphatase, putative n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101438contigF-distichus_contig101438:720..1870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.8
Seed ortholog evalue4.8e-53
Seed eggNOG ortholog2880.D8LTV6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size384
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101438.113.1prot_F-distichus_contig101438.113.1Fucus distichus monoicouspolypeptideF-distichus_contig101438 720..1870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.148719-CDS-F-distichus_contig101438:719..8251622928930.148719-CDS-F-distichus_contig101438:719..825Fucus distichus monoicousCDSF-distichus_contig101438 720..825 +
1690885071.0161471-CDS-F-distichus_contig101438:719..8251690885071.0161471-CDS-F-distichus_contig101438:719..825Fucus distichus monoicousCDSF-distichus_contig101438 720..825 +
1622928930.1692083-CDS-F-distichus_contig101438:1286..14121622928930.1692083-CDS-F-distichus_contig101438:1286..1412Fucus distichus monoicousCDSF-distichus_contig101438 1287..1412 +
1690885071.029472-CDS-F-distichus_contig101438:1286..14121690885071.029472-CDS-F-distichus_contig101438:1286..1412Fucus distichus monoicousCDSF-distichus_contig101438 1287..1412 +
1622928930.1928678-CDS-F-distichus_contig101438:1718..18701622928930.1928678-CDS-F-distichus_contig101438:1718..1870Fucus distichus monoicousCDSF-distichus_contig101438 1719..1870 +
1690885071.0493991-CDS-F-distichus_contig101438:1718..18701690885071.0493991-CDS-F-distichus_contig101438:1718..1870Fucus distichus monoicousCDSF-distichus_contig101438 1719..1870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101438.113.1

>prot_F-distichus_contig101438.113.1 ID=prot_F-distichus_contig101438.113.1|Name=mRNA_F-distichus_contig101438.113.1|organism=Fucus distichus monoicous|type=polypeptide|length=128bp
RAVLSRGGKAVDLTEDHKPNAPRELERIYRNTAVHLTWEGFESSQGLQIE
ETGVYRVNGNLAVARAIGDVDCRPWVSGEAEIRTIEINRETDQFVILASD
GLWDVMSSEEAVQYVHSVMGGALGVGRE
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mRNA from alignment at F-distichus_contig101438:720..1870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101438.113.1 ID=mRNA_F-distichus_contig101438.113.1|Name=mRNA_F-distichus_contig101438.113.1|organism=Fucus distichus monoicous|type=mRNA|length=1151bp|location=Sequence derived from alignment at F-distichus_contig101438:720..1870+ (Fucus distichus monoicous)
AGGGCTGTGCTTAGCCGGGGAGGAAAAGCGGTCGACCTTACCGAAGACCA CAAGCCCAACGCGCCCCGAGAACTGGAGCGCATCTACAGGAATACTGCTG TACACCGTTCTGTAGTATTGAGAGGGCCACTTGTTTTACTCGACAGTATC GAGAAAGTATATTAACGTGACGAGCAGAGAGGCGAAGTAGAACAACGTCA CTGTGGCTTACACTTACACTTAGTCTTACACTTACACTTAGTCTTACACT TACACTTACACATAATATGTAGCTCTGCATTTGACATGCCCCAAGCACAC CTCATTCGATAGAACATATAATAACCCGGGGATGGGCGGTGTGTGTCCCT GTCTGTCCTCGAGGGCAACTTTCTGGAATCTTAAAAGTTAAATTATATCG TTTGGTCAATGCGTGTTTTTCCAGGGAGGAAAGGGCGAGCTAAGAAAGGG GAAAGATATGCAAGTATTATGTGATAAAACATAAGCAAAAATAGTGTGCC TCTCTCAGCTTAAGCCCCGCTACACACCTCCACTGCGTGCGTCCTCTGCA CAGACACGATGGAATAGTGACATGGGAGGGTTTCGAGTCCTCTCAAGGTT TACAGATAGAGGAGACCGGGGTGTACCGCGTCAACGGGAATCTGGCCGTC GCCAGGGCAATCGGGGACGTTGACTGCCGCCCCTGGGTGTCTGGTGAGCA TGTTCAACTGTTACGTTTACAGTAGTCTGCCTGTAGTACACCGCCACCCA TTCGTCTATGTATCGAGTCGGTATAAGTCGATGGAAACTGGAACACGTTA TGATTGGGTAAAGCGTTGAGCGCAGAGGCGTGTTCAAAACAGTGAAAGAG GCGATGAGTATCCCGAAGCGCAACATATCCTCTTGGGAACAAGAAGGCAT TTCTATAGTCACGGAACACCCACGCCCAAGGCACACTCGAAAGGCTGCTC CATCGCCCCCTGTAACAAATGGCGTTCTACCCTGATTGTACTTCTGCAGG CGAAGCGGAAATCCGAACGATCGAGATTAACCGCGAGACGGACCAGTTCG TGATCCTTGCGAGCGACGGGCTGTGGGACGTGATGAGCTCGGAAGAAGCG GTGCAGTACGTGCACTCCGTCATGGGGGGAGCCCTCGGGGTGGGTCGCGA G
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Coding sequence (CDS) from alignment at F-distichus_contig101438:720..1870+

>mRNA_F-distichus_contig101438.113.1 ID=mRNA_F-distichus_contig101438.113.1|Name=mRNA_F-distichus_contig101438.113.1|organism=Fucus distichus monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at F-distichus_contig101438:720..1870+ (Fucus distichus monoicous)
AGGGCTGTGCTTAGCCGGGGAGGAAAAGCGGTCGACCTTACCGAAGACCA
CAAGCCCAACGCGCCCCGAGAACTGGAGCGCATCTACAGGAATACTGCTG
TACACCAGGGCTGTGCTTAGCCGGGGAGGAAAAGCGGTCGACCTTACCGA
AGACCACAAGCCCAACGCGCCCCGAGAACTGGAGCGCATCTACAGGAATA
CTGCTGTACACCTGACATGGGAGGGTTTCGAGTCCTCTCAAGGTTTACAG
ATAGAGGAGACCGGGGTGTACCGCGTCAACGGGAATCTGGCCGTCGCCAG
GGCAATCGGGGACGTTGACTGCCGCCCCTGGGTGTCTGTGACATGGGAGG
GTTTCGAGTCCTCTCAAGGTTTACAGATAGAGGAGACCGGGGTGTACCGC
GTCAACGGGAATCTGGCCGTCGCCAGGGCAATCGGGGACGTTGACTGCCG
CCCCTGGGTGTCTGGCGAAGCGGAAATCCGAACGATCGAGATTAACCGCG
AGACGGACCAGTTCGTGATCCTTGCGAGCGACGGGCTGTGGGACGTGATG
AGCTCGGAAGAAGCGGTGCAGTACGTGCACTCCGTCATGGGGGGAGCCCT
CGGGGTGGGTCGCGAGGCGAAGCGGAAATCCGAACGATCGAGATTAACCG
CGAGACGGACCAGTTCGTGATCCTTGCGAGCGACGGGCTGTGGGACGTGA
TGAGCTCGGAAGAAGCGGTGCAGTACGTGCACTCCGTCATGGGGGGAGCC
CTCGGGGTGGGTCGCGAG
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