mRNA_F-distichus_contig10142.111.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10142.111.1
Unique NamemRNA_F-distichus_contig10142.111.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10142.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10142contigF-distichus_contig10142:8869..9529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10142.111.1prot_F-distichus_contig10142.111.1Fucus distichus monoicouspolypeptideF-distichus_contig10142 8873..9529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.9722488-UTR-F-distichus_contig10142:8868..88721622928929.9722488-UTR-F-distichus_contig10142:8868..8872Fucus distichus monoicousUTRF-distichus_contig10142 8869..8872 -
1690885070.9692588-UTR-F-distichus_contig10142:8868..88721690885070.9692588-UTR-F-distichus_contig10142:8868..8872Fucus distichus monoicousUTRF-distichus_contig10142 8869..8872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.9887176-CDS-F-distichus_contig10142:8872..90901622928929.9887176-CDS-F-distichus_contig10142:8872..9090Fucus distichus monoicousCDSF-distichus_contig10142 8873..9090 -
1690885070.9840665-CDS-F-distichus_contig10142:8872..90901690885070.9840665-CDS-F-distichus_contig10142:8872..9090Fucus distichus monoicousCDSF-distichus_contig10142 8873..9090 -
1622928930.0037248-CDS-F-distichus_contig10142:9474..95291622928930.0037248-CDS-F-distichus_contig10142:9474..9529Fucus distichus monoicousCDSF-distichus_contig10142 9475..9529 -
1690885070.994952-CDS-F-distichus_contig10142:9474..95291690885070.994952-CDS-F-distichus_contig10142:9474..9529Fucus distichus monoicousCDSF-distichus_contig10142 9475..9529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10142.111.1

>prot_F-distichus_contig10142.111.1 ID=prot_F-distichus_contig10142.111.1|Name=mRNA_F-distichus_contig10142.111.1|organism=Fucus distichus monoicous|type=polypeptide|length=91bp
MKGGRGTRASAAKLHRLREFSRRCKVGTPEPVLSRLSSTTPRWLNSTETR
SPSSPPCPRPETALPASTLTKIRSRRVGTLMLSLRSNQRF*
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mRNA from alignment at F-distichus_contig10142:8869..9529-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10142.111.1 ID=mRNA_F-distichus_contig10142.111.1|Name=mRNA_F-distichus_contig10142.111.1|organism=Fucus distichus monoicous|type=mRNA|length=661bp|location=Sequence derived from alignment at F-distichus_contig10142:8869..9529- (Fucus distichus monoicous)
ATGAAAGGGGGGAGAGGGACGAGAGCCTCGGCGGCGAAATTACACCGCCT
GCGAGGCGAGTGCTTTCGTTTGCGTCCTCGTTTGCTTTGTAAAGGCCTTT
CCAGGCTGTTCGAAATCGCGATACACTACATTTTCTGCCCTTGCCAAGAA
CGGGTGTCAACAGCGCCAATTCCGACAGGTTCGATCATTGTTGGATATAC
GTTTGGTATTGCTAATACTAACGCATTGTGTGTTATTTGATCCTTCGAAT
TTATGTCCTATTTGATACTTCGACTATATGTCCTGAATCGCCATATTGTT
TCGGTCATTTGCATGTAAAGCGATATTTCCCTCAAGGGCTACGATGAAAA
CAAATCTATCCATATGTCACCTCAAATGTGCCCACTCGGCACCTAATTGT
AATTACCACCGTGCTTGCAACCCCATGGCGTTGGCGCAGAATTTTCGCGC
AGATGCAAGGTGGGAACGCCGGAACCCGTCCTTTCACGTCTGTCTTCAAC
GACGCCGAGATGGCTAAATTCGACAGAAACGCGCTCTCCTTCCTCACCAC
CATGCCCACGTCCGGAAACCGCACTGCCGGCCAGTACATTAACTAAGATA
CGTTCGCGTCGAGTTGGAACGCTGATGTTGAGCTTGAGGAGCAACCAACG
CTTTTAAAGGC
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Coding sequence (CDS) from alignment at F-distichus_contig10142:8869..9529-

>mRNA_F-distichus_contig10142.111.1 ID=mRNA_F-distichus_contig10142.111.1|Name=mRNA_F-distichus_contig10142.111.1|organism=Fucus distichus monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at F-distichus_contig10142:8869..9529- (Fucus distichus monoicous)
ATGAAAGGGGGGAGAGGGACGAGAGCCTCGGCGGCGAAATTACACCGCCT
GCGAGATGAAAGGGGGGAGAGGGACGAGAGCCTCGGCGGCGAAATTACAC
CGCCTGCGAGAATTTTCGCGCAGATGCAAGGTGGGAACGCCGGAACCCGT
CCTTTCACGTCTGTCTTCAACGACGCCGAGATGGCTAAATTCGACAGAAA
CGCGCTCTCCTTCCTCACCACCATGCCCACGTCCGGAAACCGCACTGCCG
GCCAGTACATTAACTAAGATACGTTCGCGTCGAGTTGGAACGCTGATGTT
GAGCTTGAGGAGCAACCAACGCTTTTAAAATTTTCGCGCAGATGCAAGGT
GGGAACGCCGGAACCCGTCCTTTCACGTCTGTCTTCAACGACGCCGAGAT
GGCTAAATTCGACAGAAACGCGCTCTCCTTCCTCACCACCATGCCCACGT
CCGGAAACCGCACTGCCGGCCAGTACATTAACTAAGATACGTTCGCGTCG
AGTTGGAACGCTGATGTTGAGCTTGAGGAGCAACCAACGCTTTTAA
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