mRNA_F-distichus_contig1014.110.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1014.110.1
Unique NamemRNA_F-distichus_contig1014.110.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: A0A6H5K2P7_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2P7_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.480e-46
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 GGWTAGEFPDNFPYYCGDSFADGQRANMYGCHGGALTQSGYTPGADSTVCGCPDWENA--GILAPAISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQNLEGGVN 345
            GGW  G FPD  P++CG   + G R++MYGC+G  L  SGYTPGAD+T CGCP+WE+    ++AP IS+C GINPEWV+++ PW  H K+ACPTAYTFPYDDQTSTFTC + +G  N
Sbjct:  461 GGWEDGTFPDAHPFFCGSEVSGGMRSHMYGCYGTTLAHSGYTPGADTTACGCPEWEDPPYNLMAPPISDCTGINPEWVELSMPWHAHQKRACPTAYTFPYDDQTSTFTCFDGDGPGN 577          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: D7FRB8_ECTSI (Thaumatin-domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 6.600e-27
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 GEFPDNFPYYC--------GDSFADGQRANMYGCHGGALTQSGYTPGADSTVCGCPDWENAGILAPAISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQN 327
            G FP++FP+ C        GD+      +++YGC G     SGY+  A+ T CGCPDW   GI AP+ S C G NP W  ++ PW ++LK+ACPTAY FPYDD +STF C+N
Sbjct:  647 GYFPNSFPFMCDKHTMQVIGDNST---YSDIYGCAGPIYGLSGYSRNAEDTACGCPDWPALGINAPSESTCYGKNPYWEALSVPWLKYLKRACPTAYCFPYDDHSSTFVCRN 755          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: L8GSW0_ACACA (Thaumatin domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSW0_ACACA)

HSP 1 Score: 100 bits (250), Expect = 6.610e-23
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 GGWTAGEFPDNFPYYCGDSFADGQRANMYGCHGGALTQSGYTPGADSTVCGCPDWENAGILAPA-ISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQNLEGGVN 345
            G WTA +       Y G  F   Q + +YGC  G    S Y P A ST CGC +W++ G+  P+ ++ C  INP WV   QP    +KKACPT+YT+PYDD +STFTC  + GG+N
Sbjct:  257 GYWTADQVCGMNSNY-GAPFDCAQYSRLYGCTNGI--DSCYQPFATSTCCGCANWQDLGVPVPSSVTRCHAINPTWVKNVQPKLLWMKKACPTSYTYPYDDMSSTFTCSEMVGGLN 369          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: A0A5E4PDG3_9COXI (Uncharacterized protein n=1 Tax=Aquicella siphonis TaxID=254247 RepID=A0A5E4PDG3_9COXI)

HSP 1 Score: 96.3 bits (238), Expect = 7.160e-21
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   76 ANMYGCHGGALTQSGYTPGADSTVCGCPDWENAGILAPA---ISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQNL 330
            A+++GC  GAL QS Y+ GA ST CGC +WE  G+  P+      C  +NP W   +QP    LK +CPTAY++PYDD +STFTCQ L
Sbjct:  457 ADLFGCSTGALNQSCYSAGAISTCCGCVNWETLGVTVPSSPITQACNAVNPVWTTNSQPTLLWLKNSCPTAYSYPYDDASSTFTCQVL 544          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: J9IX81_9SPIT (Thaumatin domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IX81_9SPIT)

HSP 1 Score: 93.2 bits (230), Expect = 4.990e-20
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   79 NMYGCHGGALTQSGYTPGADSTVCGCPDWENAGILAPAISE---CVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQNLEGGVN 345
            N+Y C G     S Y PGA    CGC +W+  G+  P+  E   C   NP W D  +   + +KKACPTAYT+PYDD +STFTCQN++GG++
Sbjct:  293 NLYACVG---VGSCYQPGASQGCCGCVNWDEEGVNVPSFPETDRCKNQNPIWHDRVKDTLKWMKKACPTAYTYPYDDISSTFTCQNIQGGIS 381          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: A0A346QZ21_9HYPH (Uncharacterized protein n=2 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346QZ21_9HYPH)

HSP 1 Score: 92.4 bits (228), Expect = 1.140e-19
Identity = 48/106 (45.28%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   37 PYYCGDSF-----ADGQRANMYGC----HGGALTQSGYTPGADSTVCGCPDWENAGILAPAISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQN 327
            P+ CG +      A G  AN++GC     G    QS YT GA  T CGCP+W            C  IN  W    QPW   LK ACPTAY++PYDD+TSTFTCQ+
Sbjct:  314 PFNCGQAVPAANGAFGTVANLFGCVLDKTGKPAAQSCYTDGASDTCCGCPNWPYP---TDDGKTCQAINSAWTTSVQPWVSFLKNACPTAYSYPYDDKTSTFTCQS 416          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: A0A166FB32_9AGAM (Uncharacterized protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166FB32_9AGAM)

HSP 1 Score: 90.1 bits (222), Expect = 5.670e-19
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   67 GQRANMYGCHGGALTQSGYTPGADSTVCGCPDWEN---AGILAPAISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQNLEGGVN 345
            G  +  YGC  G  + S Y PGAD+  CGC +W++   +G +  +   CV  NP W    QP  +++K  CP  YT+PYDD +STFTCQN   G N
Sbjct:  275 GTNSAFYGC--GDTSGSCYQPGADTACCGCANWQDVLSSGSVPSSTLPCVNSNPVWAKTVQPTLQYIKAGCPNCYTYPYDDFSSTFTCQNTVNGFN 368          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: A0A078B3L6_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B3L6_STYLE)

HSP 1 Score: 89.4 bits (220), Expect = 1.230e-18
Identity = 52/127 (40.94%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    1 GGWTA----GEFPD-NFPYYCGDS----FADGQRANMYGCHGGALTQSGYTPGADSTVCGCPDWENAGILAPAI---SECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTCQNLEGGVN 345
            G WTA    G  P    P+ C D     ++     NMY C G     S Y PGA  + CGC +W+  G+  P+     +CV  N  W D  +   + +KKACPTAYT+PYDD +STFTCQ++ G VN
Sbjct:  257 GYWTADQVCGVIPSFGAPFNCQDRLPAPYSGFNNWNMYLCVG---IGSCYQPGASDSCCGCVNWDEEGVDVPSYPYTEKCVNKNSAWNDRMKNTLKWMKKACPTAYTYPYDDISSTFTCQHMNGSVN 380          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: A0A8K1C7Q3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Q3_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-18
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   97 GGALTQSGYTPGADSTVCGCPDWENAGILA---PAISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTC 321
            G A+ +  Y  G D  VCGC DW++ G+     P   +C  +NP+W++   P  + LKKACPT YT+PYDD TSTF C
Sbjct:   93 GKAMREPTYVNGKDGEVCGCTDWQDRGVKVFNTPPTEKCKTVNPKWIEKIVPTLDFLKKACPTTYTYPYDDMTSTFVC 170          
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Match: A0A8K1C856_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C856_PYTOL)

HSP 1 Score: 87.8 bits (216), Expect = 4.750e-18
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 1
Query:   31 NFPYYCGDSFADGQRANMYGCHG--GALTQSGYTP---GADSTVCGCPDWENAGILA---PAISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDDQTSTFTC 321
            N  + C +S  D     +   HG  G    SGY P   G D   CGC DW++ G+     P   +C  +NP+W++   P  + LKKACPT YT+PYDD TSTF C
Sbjct:  286 NKHFKCDESAGDATGLKIRDIHGCVGPQYLSGYQPASKGKDGEACGCTDWQDRGVKVFNTPPTEKCKAVNPKWIEKIVPTLDFLKKACPTTYTYPYDDMTSTFVC 390          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1014.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2P7_9PHAE1.480e-4659.83WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FRB8_ECTSI6.600e-2747.32Thaumatin-domain containing protein n=2 Tax=Ectoca... [more]
L8GSW0_ACACA6.610e-2344.83Thaumatin domain containing protein n=1 Tax=Acanth... [more]
A0A5E4PDG3_9COXI7.160e-2150.00Uncharacterized protein n=1 Tax=Aquicella siphonis... [more]
J9IX81_9SPIT4.990e-2046.74Thaumatin domain-containing protein n=1 Tax=Oxytri... [more]
A0A346QZ21_9HYPH1.140e-1945.28Uncharacterized protein n=2 Tax=Breoghania sp. L-A... [more]
A0A166FB32_9AGAM5.670e-1942.71Uncharacterized protein n=1 Tax=Fibularhizoctonia ... [more]
A0A078B3L6_STYLE1.230e-1840.94Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A8K1C7Q3_PYTOL1.340e-1846.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K1C856_PYTOL4.750e-1840.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1014contigF-distichus_contig1014:224..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.5
Seed ortholog evalue5.9e-10
Seed eggNOG ortholog1122165.AUHS01000005_gene1738
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thaumatin family
EggNOG OGs1JGQ6@118969,1P3U7@1224,1SJGY@1236,2DX7U@1,343S2@2
COG Functional cat.S
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.935308-CDS-F-distichus_contig1014:223..5681622928929.935308-CDS-F-distichus_contig1014:223..568Fucus distichus monoicousCDSF-distichus_contig1014 224..568 +
1690885070.9563093-CDS-F-distichus_contig1014:223..5681690885070.9563093-CDS-F-distichus_contig1014:223..568Fucus distichus monoicousCDSF-distichus_contig1014 224..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1014.110.1prot_F-distichus_contig1014.110.1Fucus distichus monoicouspolypeptideF-distichus_contig1014 224..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1014.110.1

>prot_F-distichus_contig1014.110.1 ID=prot_F-distichus_contig1014.110.1|Name=mRNA_F-distichus_contig1014.110.1|organism=Fucus distichus monoicous|type=polypeptide|length=115bp
GGWTAGEFPDNFPYYCGDSFADGQRANMYGCHGGALTQSGYTPGADSTVC
GCPDWENAGILAPAISECVGINPEWVDVAQPWAEHLKKACPTAYTFPYDD
QTSTFTCQNLEGGVN
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mRNA from alignment at F-distichus_contig1014:224..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1014.110.1 ID=mRNA_F-distichus_contig1014.110.1|Name=mRNA_F-distichus_contig1014.110.1|organism=Fucus distichus monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at F-distichus_contig1014:224..568+ (Fucus distichus monoicous)
GGCGGATGGACGGCGGGCGAGTTTCCTGACAACTTTCCGTACTACTGCGG TGACTCCTTTGCCGACGGCCAGCGCGCCAATATGTACGGTTGTCACGGAG GAGCCCTCACGCAGTCCGGATACACCCCCGGCGCGGACTCCACCGTGTGT GGCTGCCCCGACTGGGAGAATGCGGGCATCTTGGCGCCGGCGATTTCGGA GTGCGTGGGTATCAACCCAGAATGGGTGGACGTGGCGCAACCTTGGGCTG AGCACTTGAAGAAGGCGTGCCCCACGGCGTACACATTTCCATACGACGAC CAAACGTCGACATTTACATGCCAGAACCTCGAGGGCGGCGTCAAC
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Coding sequence (CDS) from alignment at F-distichus_contig1014:224..568+

>mRNA_F-distichus_contig1014.110.1 ID=mRNA_F-distichus_contig1014.110.1|Name=mRNA_F-distichus_contig1014.110.1|organism=Fucus distichus monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at F-distichus_contig1014:224..568+ (Fucus distichus monoicous)
GGCGGATGGACGGCGGGCGAGTTTCCTGACAACTTTCCGTACTACTGCGG
TGACTCCTTTGCCGACGGCCAGCGCGCCAATATGTACGGTTGTCACGGAG
GAGCCCTCACGCAGTCCGGATACACCCCCGGCGCGGACTCCACCGTGTGT
GGCTGCCCCGACTGGGAGAATGCGGGCATCTTGGCGCCGGCGATTTCGGA
GTGCGTGGGTATCAACCCAGAATGGGTGGACGTGGCGCAACCTTGGGCTG
AGCACTTGAAGAAGGCGTGCCCCACGGCGTACACATTTCCATACGACGAC
CAAACGTCGACATTTACATGCCAGAACCTCGAGGGCGGCGTCAACGGCGG
ATGGACGGCGGGCGAGTTTCCTGACAACTTTCCGTACTACTGCGGTGACT
CCTTTGCCGACGGCCAGCGCGCCAATATGTACGGTTGTCACGGAGGAGCC
CTCACGCAGTCCGGATACACCCCCGGCGCGGACTCCACCGTGTGTGGCTG
CCCCGACTGGGAGAATGCGGGCATCTTGGCGCCGGCGATTTCGGAGTGCG
TGGGTATCAACCCAGAATGGGTGGACGTGGCGCAACCTTGGGCTGAGCAC
TTGAAGAAGGCGTGCCCCACGGCGTACACATTTCCATACGACGACCAAAC
GTCGACATTTACATGCCAGAACCTCGAGGGCGGCGTCAAC
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