mRNA_F-distichus_contig101296.100.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101296.100.1
Unique NamemRNA_F-distichus_contig101296.100.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig101296.100.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 8.190e-50
Identity = 76/100 (76.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 CSVLKGSWKKCMTRKHNPRMSTVRNEELAYGHRQCVKPDQQSITIYKLRDNETNEEFLEFDEHIVFQTACDDCLNIKTCLDSGHRLVDWRPTFAGGRAAG 300
            CS  KGSWKKCM+R+HNPRMSTVR +EL Y HRQCVKPDQ +ITIYKL D+ETNE++LEFDE I+FQTAC  CLNIK+CL  GH+L+DWRPTFAGGR AG
Sbjct:   16 CSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQ-AITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAG 114
[Close]
BLAST of mRNA_F-distichus_contig101296.100.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 3.150e-33
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 CSVLKGSWKKCMTRKHNPRMSTVRNEELAYGHRQCVKPDQQSITIYKLRDNETNEEFLEFDEHIVFQTACDDCLNIKTCLDSGHRLVDWRPTFA-GGRAAG 300
            CS  KGSWKKCM+R+HNPRMSTVR +EL   HRQCVKPDQ +ITIYKL D+ETNE++LEFDE I+FQTAC  CLNIK+CL  G     +  TF  GG++AG
Sbjct:   16 CSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQ-AITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKV---FSATFGKGGKSAG 112
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101296.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0U1_ECTSI8.190e-5076.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LER2_9PHAE3.150e-3366.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101296contigF-distichus_contig101296:71..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.858137-CDS-F-distichus_contig101296:70..1901622928928.858137-CDS-F-distichus_contig101296:70..190Fucus distichus monoicousCDSF-distichus_contig101296 71..190 +
1690885070.3245432-CDS-F-distichus_contig101296:70..1901690885070.3245432-CDS-F-distichus_contig101296:70..190Fucus distichus monoicousCDSF-distichus_contig101296 71..190 +
1622928928.8723428-CDS-F-distichus_contig101296:676..8831622928928.8723428-CDS-F-distichus_contig101296:676..883Fucus distichus monoicousCDSF-distichus_contig101296 677..883 +
1690885070.3374567-CDS-F-distichus_contig101296:676..8831690885070.3374567-CDS-F-distichus_contig101296:676..883Fucus distichus monoicousCDSF-distichus_contig101296 677..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101296.100.1prot_F-distichus_contig101296.100.1Fucus distichus monoicouspolypeptideF-distichus_contig101296 71..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101296.100.1

>prot_F-distichus_contig101296.100.1 ID=prot_F-distichus_contig101296.100.1|Name=mRNA_F-distichus_contig101296.100.1|organism=Fucus distichus monoicous|type=polypeptide|length=109bp
CSVLKGSWKKCMTRKHNPRMSTVRNEELAYGHRQCVKPDQQSITIYKLRD
NETNEEFLEFDEHIVFQTACDDCLNIKTCLDSGHRLVDWRPTFAGGRAAG
DPVDSPGAN
back to top

mRNA from alignment at F-distichus_contig101296:71..883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101296.100.1 ID=mRNA_F-distichus_contig101296.100.1|Name=mRNA_F-distichus_contig101296.100.1|organism=Fucus distichus monoicous|type=mRNA|length=813bp|location=Sequence derived from alignment at F-distichus_contig101296:71..883+ (Fucus distichus monoicous)
TGCTCGGTTCTTAAGGGGAGCTGGAAAAAATGCATGACGAGAAAGCACAA
CCCGCGAATGTCAACCGTGCGCAACGAGGAGCTGGCGTACGGGCACCGAC
AATGCGTCAAGCCTGATCAGGTGGGCATTGTCTGCCATCGCTGAGAAGTG
TGTATTTGCTCAAGGGGACGACGTTAGATCGCGCCGCAAGCGTGTTAGGG
AGGAGTTGTAGAGAGAAATGGCGCGTCCCTCGAAGGGAGGAAGATGTTTT
TCCGAATGGTGACTCTCTAGCCTTTGGAGTGTTGTTTGGTCCAGGCTCTT
TCTGAGTTATTTTTGCTGGGTATAAGATGAACCGCGGACGAAAAGGAACC
GTTGCCTCTTACAGAGTGGAACGGACGCTGAGCCTGTTCGTGAGCGGGTG
GGTGGCGCGTGTACTTACTGTAGAGATATTGATTTGCCAGAGCGACAACG
AGTTGCATAAGCAACGGAATCACATACCTAGTCGGAGGAGCTACTCGTAC
GTACTCGTGGTAAGATATGTTGCCTATAATAGGTAGCCTGTACACTCCAG
CACCTTACCTCCGCTCCTCTGCTAACATAATATATATATATTATATAACG
AACCAGCAGTCGATAACGATCTACAAGCTCCGAGACAACGAGACCAACGA
AGAATTCCTGGAGTTCGACGAGCACATCGTGTTCCAGACAGCGTGCGACG
ACTGCCTGAACATCAAGACGTGCCTCGACTCCGGCCACAGGCTCGTCGAC
TGGCGCCCCACGTTCGCGGGAGGCCGCGCCGCGGGAGACCCGGTCGACAG
CCCAGGGGCCAAC
back to top

Coding sequence (CDS) from alignment at F-distichus_contig101296:71..883+

>mRNA_F-distichus_contig101296.100.1 ID=mRNA_F-distichus_contig101296.100.1|Name=mRNA_F-distichus_contig101296.100.1|organism=Fucus distichus monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at F-distichus_contig101296:71..883+ (Fucus distichus monoicous)
TGCTCGGTTCTTAAGGGGAGCTGGAAAAAATGCATGACGAGAAAGCACAA
CCCGCGAATGTCAACCGTGCGCAACGAGGAGCTGGCGTACGGGCACCGAC
AATGCGTCAAGCCTGATCAGTGCTCGGTTCTTAAGGGGAGCTGGAAAAAA
TGCATGACGAGAAAGCACAACCCGCGAATGTCAACCGTGCGCAACGAGGA
GCTGGCGTACGGGCACCGACAATGCGTCAAGCCTGATCAGCAGTCGATAA
CGATCTACAAGCTCCGAGACAACGAGACCAACGAAGAATTCCTGGAGTTC
GACGAGCACATCGTGTTCCAGACAGCGTGCGACGACTGCCTGAACATCAA
GACGTGCCTCGACTCCGGCCACAGGCTCGTCGACTGGCGCCCCACGTTCG
CGGGAGGCCGCGCCGCGGGAGACCCGGTCGACAGCCCAGGGGCCAACCAG
TCGATAACGATCTACAAGCTCCGAGACAACGAGACCAACGAAGAATTCCT
GGAGTTCGACGAGCACATCGTGTTCCAGACAGCGTGCGACGACTGCCTGA
ACATCAAGACGTGCCTCGACTCCGGCCACAGGCTCGTCGACTGGCGCCCC
ACGTTCGCGGGAGGCCGCGCCGCGGGAGACCCGGTCGACAGCCCAGGGGC
CAAC
back to top