mRNA_F-distichus_contig101268.98.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101268.98.1
Unique NamemRNA_F-distichus_contig101268.98.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: D7FL84_ECTSI (Similar to aldehyde oxidase 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL84_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.300e-35
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRRVGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPL 219
            +HLVFFVNGAK VV+D QPQTTLLQ+LR  GLTGTKLGCGEGGCGACTVMVS+FD  +++I+H +VNACLAP+
Sbjct:   17 NHLVFFVNGAKQVVKDAQPQTTLLQHLRAAGLTGTKLGCGEGGCGACTVMVSSFDSDKKQIKHAAVNACLAPV 89          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.620e-33
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRRVGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVS 225
            DHL+FFVNGAK VV+D QPQTTLLQ+LR VGLTGTKLGCGEGGCGACTVMVS+FD  +++I+H +VNACLAP+ S
Sbjct:   19 DHLIFFVNGAKQVVKDAQPQTTLLQHLRAVGLTGTKLGCGEGGCGACTVMVSSFDAEKKQIKHAAVNACLAPVCS 93          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.030e-33
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRRVGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVS 225
            DHLVFFVNGAK VV+D QPQTTLLQ+LR VGLTGTKLGCGEGGCGACTVMVS+FD  +++I H +VNACLAP+ S
Sbjct:   19 DHLVFFVNGAKQVVKDAQPQTTLLQHLRAVGLTGTKLGCGEGGCGACTVMVSSFDSEKKQITHAAVNACLAPMCS 93          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.620e-29
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRRVGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVS 225
            DHLVFFVNG + VV+D QP+ TLL +LR  GLTGTKLGCGEGGCGACTVMVS++D+  + IRH +VNACLAP+ S
Sbjct:    7 DHLVFFVNGKRQVVKDAQPEVTLLSWLRASGLTGTKLGCGEGGCGACTVMVSSYDHGAKTIRHAAVNACLAPICS 81          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: A0A8B7TCL7_HIPAR (xanthine dehydrogenase/oxidase-like n=1 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7TCL7_HIPAR)

HSP 1 Score: 108 bits (269), Expect = 1.510e-28
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRR-VGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVSQSRYAV 243
            D LVFFVNG K V ++  P+TTLL YLRR +GL+GTKLGCG GGCGACTVMVS +D++Q +I H SVNACL P+ S    AV
Sbjct:    4 DKLVFFVNGRKVVEKNADPETTLLAYLRRSLGLSGTKLGCGVGGCGACTVMVSKYDHLQNKIVHFSVNACLTPICSLHHVAV 85          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: A0A8B7S8X3_HIPAR (xanthine dehydrogenase/oxidase-like n=1 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7S8X3_HIPAR)

HSP 1 Score: 109 bits (273), Expect = 2.730e-28
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRR-VGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVSQSRYAV 243
            D LVFFVNG K V ++  P+TTLL YLRR +GL+GTKLGCGEGGCGACTVMVS +D +Q +I H SVNACL P+ S    AV
Sbjct:    4 DELVFFVNGRKVVEKNADPETTLLAYLRRSLGLSGTKLGCGEGGCGACTVMVSKYDRLQNKIIHFSVNACLTPICSLHHVAV 85          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: A0A0E9WUG7_ANGAN (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9WUG7_ANGAN)

HSP 1 Score: 107 bits (266), Expect = 3.440e-28
Identity = 55/82 (67.07%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRR-VGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVSQSRYAV 243
            D LVFFVNG K V R+ +P+ TLL YLRR +GLTGTKLGC EGGCGACTVMVS F   Q  I H SVNACLAP+ S    AV
Sbjct:   10 DELVFFVNGKKIVERNAEPEMTLLTYLRRTLGLTGTKLGCAEGGCGACTVMVSKFHRCQNRIVHHSVNACLAPICSLHHCAV 91          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: A0A6P4V651_PANPR (xanthine dehydrogenase/oxidase-like isoform X3 n=2 Tax=Panthera pardus TaxID=9691 RepID=A0A6P4V651_PANPR)

HSP 1 Score: 109 bits (273), Expect = 3.850e-28
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRR-VGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVSQSRYAV 243
            D LVFFVNG K V ++  P+TTLL YLRR +GL+GTKLGCGEGGCGACTVM+S +D  Q +I H SVNACLAP+ S    AV
Sbjct:    4 DELVFFVNGKKVVEKNADPETTLLSYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDRFQNKIIHFSVNACLAPICSLHHVAV 85          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: Q3TP30_MOUSE (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Mus musculus TaxID=10090 RepID=Q3TP30_MOUSE)

HSP 1 Score: 108 bits (269), Expect = 9.190e-28
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRR-VGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVSQSRYAV 243
            D LVFFVNG K V ++  P+TTLL YLRR +GL GTKLGCGEGGCGACTVM+S +D +Q +I H SVNACL P+ S    AV
Sbjct:    7 DELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRLQNKIVHFSVNACLTPICSLHHVAV 88          
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Match: UPI000529F83E (xanthine dehydrogenase/oxidase-like n=1 Tax=Colius striatus TaxID=57412 RepID=UPI000529F83E)

HSP 1 Score: 107 bits (266), Expect = 2.180e-27
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 DHLVFFVNGAKHVVRDVQPQTTLLQYLRR-VGLTGTKLGCGEGGCGACTVMVSAFDYVQREIRHTSVNACLAPLVSQSRYAV 243
            D LVFFVNG K V +DV P+TTLL YLRR +GL GTKLGCGEGGCGACTVM+S +D  +++I H + NACL P+ S    AV
Sbjct:    8 DELVFFVNGKKVVEKDVDPETTLLTYLRRKLGLCGTKLGCGEGGCGACTVMISKYDPFRKKILHHTANACLFPICSLHHVAV 89          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101268.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL84_ECTSI1.300e-3576.71Similar to aldehyde oxidase 3 n=1 Tax=Ectocarpus s... [more]
A0A6H5JRC2_9PHAE3.620e-3377.33Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G4V3_ECTSI5.030e-3378.67Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A836C8N1_9STRA1.620e-2970.67Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A8B7TCL7_HIPAR1.510e-2864.63xanthine dehydrogenase/oxidase-like n=1 Tax=Hippos... [more]
A0A8B7S8X3_HIPAR2.730e-2865.85xanthine dehydrogenase/oxidase-like n=1 Tax=Hippos... [more]
A0A0E9WUG7_ANGAN3.440e-2867.072Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6P4V651_PANPR3.850e-2865.85xanthine dehydrogenase/oxidase-like isoform X3 n=2... [more]
Q3TP30_MOUSE9.190e-2864.632Fe-2S ferredoxin-type domain-containing protein n... [more]
UPI000529F83E2.180e-2763.41xanthine dehydrogenase/oxidase-like n=1 Tax=Colius... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101268contigF-distichus_contig101268:718..960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.6e-28
Seed eggNOG ortholog2880.D7G4V3
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.7558112-CDS-F-distichus_contig101268:717..9601622928928.7558112-CDS-F-distichus_contig101268:717..960Fucus distichus monoicousCDSF-distichus_contig101268 718..960 -
1690885070.2807345-CDS-F-distichus_contig101268:717..9601690885070.2807345-CDS-F-distichus_contig101268:717..960Fucus distichus monoicousCDSF-distichus_contig101268 718..960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101268.98.1prot_F-distichus_contig101268.98.1Fucus distichus monoicouspolypeptideF-distichus_contig101268 718..960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101268.98.1

>prot_F-distichus_contig101268.98.1 ID=prot_F-distichus_contig101268.98.1|Name=mRNA_F-distichus_contig101268.98.1|organism=Fucus distichus monoicous|type=polypeptide|length=81bp
DHLVFFVNGAKHVVRDVQPQTTLLQYLRRVGLTGTKLGCGEGGCGACTVM
VSAFDYVQREIRHTSVNACLAPLVSQSRYAV
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mRNA from alignment at F-distichus_contig101268:718..960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101268.98.1 ID=mRNA_F-distichus_contig101268.98.1|Name=mRNA_F-distichus_contig101268.98.1|organism=Fucus distichus monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at F-distichus_contig101268:718..960- (Fucus distichus monoicous)
GATCACCTCGTCTTCTTCGTCAACGGTGCCAAGCACGTGGTCCGAGATGT CCAGCCCCAGACCACCCTGTTGCAGTATCTACGCCGAGTCGGCCTGACGG GCACCAAGCTAGGCTGCGGCGAGGGCGGTTGTGGGGCCTGCACTGTCATG GTGTCGGCGTTCGACTACGTCCAGAGGGAGATCAGGCACACATCAGTCAA CGCTTGCCTGGCACCCTTGGTGAGTCAGAGCAGGTATGCAGTA
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Coding sequence (CDS) from alignment at F-distichus_contig101268:718..960-

>mRNA_F-distichus_contig101268.98.1 ID=mRNA_F-distichus_contig101268.98.1|Name=mRNA_F-distichus_contig101268.98.1|organism=Fucus distichus monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at F-distichus_contig101268:718..960- (Fucus distichus monoicous)
GATCACCTCGTCTTCTTCGTCAACGGTGCCAAGCACGTGGTCCGAGATGT
CCAGCCCCAGACCACCCTGTTGCAGTATCTACGCCGAGTCGGCCTGACGG
GCACCAAGCTAGGCTGCGGCGAGGGCGGTTGTGGGGCCTGCACTGTCATG
GTGTCGGCGTTCGACTACGTCCAGAGGGAGATCAGGCACACATCAGTCAA
CGCTTGCCTGGCACCCTTGGTGAGTCAGAGCAGGTATGCAGTAGATCACC
TCGTCTTCTTCGTCAACGGTGCCAAGCACGTGGTCCGAGATGTCCAGCCC
CAGACCACCCTGTTGCAGTATCTACGCCGAGTCGGCCTGACGGGCACCAA
GCTAGGCTGCGGCGAGGGCGGTTGTGGGGCCTGCACTGTCATGGTGTCGG
CGTTCGACTACGTCCAGAGGGAGATCAGGCACACATCAGTCAACGCTTGC
CTGGCACCCTTGGTGAGTCAGAGCAGGTATGCAGTA
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