mRNA_F-distichus_contig101227.95.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101227.95.1
Unique NamemRNA_F-distichus_contig101227.95.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.970e-17
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 VQGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLVK 156
            VQGAVSPLAVVND EG+A LAMDK +++A ++LVHPLRNDRSVR+KA DLVK
Sbjct:  285 VQGAVSPLAVVNDVEGVARLAMDKSVMEAEEVLVHPLRNDRSVRIKAADLVK 336
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: A0A7S3ANH3_9EUKA (Proline--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANH3_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 7.230e-8
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 QGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLVK 156
            QG+VSPLAV+ND  G  TL +DK+L+ A+ + VHPLRND + ++   DL K
Sbjct:  105 QGSVSPLAVMNDTTGAVTLCIDKELMQANYVGVHPLRNDMTNQISPDDLTK 155
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: L1JN40_GUITC (Proline--tRNA ligase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JN40_GUITC)

HSP 1 Score: 55.5 bits (132), Expect = 2.530e-7
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 VQGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLVK 156
            ++G+V+P A +ND E   T A+DKDL+    L +HPL ND+S  + A +LVK
Sbjct:  100 IKGSVTPFAAINDTENKCTFAIDKDLMKEQTLWLHPLHNDKSTSISADNLVK 151
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: H3GKZ2_PHYRM (Proline--tRNA ligase n=21 Tax=Phytophthora TaxID=4783 RepID=H3GKZ2_PHYRM)

HSP 1 Score: 52.0 bits (123), Expect = 4.240e-6
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 QGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLVK 156
            +G+VSPL V++D +    L +DK LVD + +  HPLRND++  +KA+DL+K
Sbjct:  110 KGSVSPLCVMHDAKNEVRLVLDKALVDTTLVNCHPLRNDQTYAIKAEDLLK 160
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: A0A7S3H5B0_9STRA (Proline--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5B0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 7.920e-6
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 VQGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLV 153
            ++GAVSP A+VND        +DK L+DA  + +HPLRNDR+  +   DLV
Sbjct:   99 IRGAVSPFALVNDSAAEVKFVIDKALLDAELINIHPLRNDRTTSIPPADLV 149
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: A0A2P4YQK5_9STRA (Proline--tRNA ligase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQK5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.440e-5
Identity = 22/51 (43.14%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 QGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLVK 156
            +G+VSPL V++D +      +DK L+D + +  HPLRND++  ++AQDL+K
Sbjct:  110 KGSVSPLCVMHDAKNEVRFVLDKALLDTTQVNCHPLRNDQTYSIQAQDLLK 160
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: A0A3D5I4S0_9PROT (Prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D5I4S0_9PROT)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    7 GAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLVK 156
            GAVSPL ++ND +   TL +D+ ++DA  + +HPL ND++V +   DL++
Sbjct:  118 GAVSPLTLINDPDHQVTLVIDRAILDADKVNLHPLVNDKTVTISTTDLIR 167
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: A0A0Q6ABM7_9BRAD (tRNA_edit domain-containing protein n=1 Tax=Bradyrhizobium sp. Leaf396 TaxID=1736363 RepID=A0A0Q6ABM7_9BRAD)

HSP 1 Score: 49.3 bits (116), Expect = 1.940e-5
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    1 VQGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLVKVGLGFRSC 180
            V GA++PL ++ND EG+ T  +D  L++A  L  HPL N  S  L+  DL+      RSC
Sbjct:  107 VPGALTPLGLINDIEGVVTAVIDASLLNADQLNFHPLINTESTGLRPDDLLTF---IRSC 163
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: A0A484ED02_BRELC (Proline--tRNA ligase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED02_BRELC)

HSP 1 Score: 49.7 bits (117), Expect = 2.800e-5
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 QGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLV 153
            +G+VSPL V++D +    L +DK L+D++ +  HPLRND++  +KA DL+
Sbjct:  108 KGSVSPLCVMHDVKCEVRLVLDKALLDSTQINCHPLRNDQTYSIKADDLL 157
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BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Match: UPI001FDA3708 (hypothetical protein n=1 Tax=Pseudaminobacter manganicus TaxID=1873176 RepID=UPI001FDA3708)

HSP 1 Score: 46.2 bits (108), Expect = 5.820e-5
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    7 GAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDLV 153
            GA+SPL ++ND EGL T+ +D  L+D S +  HPL    S+ L   +L+
Sbjct:   10 GALSPLGLINDEEGLVTVVVDAFLMDTSQINFHPLMRTESIGLAPHELL 58
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101227.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LNW5_ECTSI5.970e-1776.92Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S3ANH3_9EUKA7.230e-852.94Proline--tRNA ligase n=1 Tax=Haptolina ericina Tax... [more]
L1JN40_GUITC2.530e-746.15Proline--tRNA ligase n=2 Tax=Guillardia theta TaxI... [more]
H3GKZ2_PHYRM4.240e-647.06Proline--tRNA ligase n=21 Tax=Phytophthora TaxID=4... [more]
A0A7S3H5B0_9STRA7.920e-647.06Proline--tRNA ligase n=1 Tax=Spumella elongata Tax... [more]
A0A2P4YQK5_9STRA1.440e-543.14Proline--tRNA ligase (Fragment) n=1 Tax=Phytophtho... [more]
A0A3D5I4S0_9PROT1.530e-542.00Prolyl-tRNA synthetase associated domain-containin... [more]
A0A0Q6ABM7_9BRAD1.940e-541.67tRNA_edit domain-containing protein n=1 Tax=Bradyr... [more]
A0A484ED02_BRELC2.800e-544.00Proline--tRNA ligase n=1 Tax=Bremia lactucae TaxID... [more]
UPI001FDA37085.820e-542.86hypothetical protein n=1 Tax=Pseudaminobacter mang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101227contigF-distichus_contig101227:1..198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue5e-14
Seed eggNOG ortholog2880.D8LNW5
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.532521-CDS-F-distichus_contig101227:0..1981622928928.532521-CDS-F-distichus_contig101227:0..198Fucus distichus monoicousCDSF-distichus_contig101227 1..198 +
1690885070.1795824-CDS-F-distichus_contig101227:0..1981690885070.1795824-CDS-F-distichus_contig101227:0..198Fucus distichus monoicousCDSF-distichus_contig101227 1..198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101227.95.1prot_F-distichus_contig101227.95.1Fucus distichus monoicouspolypeptideF-distichus_contig101227 1..198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101227.95.1

>prot_F-distichus_contig101227.95.1 ID=prot_F-distichus_contig101227.95.1|Name=mRNA_F-distichus_contig101227.95.1|organism=Fucus distichus monoicous|type=polypeptide|length=66bp
VQGAVSPLAVVNDFEGLATLAMDKDLVDASDLLVHPLRNDRSVRLKAQDL
VKVGLGFRSCVVAFVA
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mRNA from alignment at F-distichus_contig101227:1..198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101227.95.1 ID=mRNA_F-distichus_contig101227.95.1|Name=mRNA_F-distichus_contig101227.95.1|organism=Fucus distichus monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at F-distichus_contig101227:1..198+ (Fucus distichus monoicous)
GTACAAGGTGCAGTCAGTCCACTGGCGGTGGTGAACGATTTTGAAGGGCT
TGCCACACTGGCGATGGACAAGGACCTCGTAGACGCCTCGGACTTGCTGG
TGCACCCCCTCAGGAATGATCGGAGCGTCCGCCTCAAGGCGCAGGATCTC
GTTAAGGTCGGGTTGGGTTTCCGCTCGTGCGTCGTCGCTTTTGTAGCC
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Coding sequence (CDS) from alignment at F-distichus_contig101227:1..198+

>mRNA_F-distichus_contig101227.95.1 ID=mRNA_F-distichus_contig101227.95.1|Name=mRNA_F-distichus_contig101227.95.1|organism=Fucus distichus monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at F-distichus_contig101227:1..198+ (Fucus distichus monoicous)
GTACAAGGTGCAGTCAGTCCACTGGCGGTGGTGAACGATTTTGAAGGGCT
TGCCACACTGGCGATGGACAAGGACCTCGTAGACGCCTCGGACTTGCTGG
TGCACCCCCTCAGGAATGATCGGAGCGTCCGCCTCAAGGCGCAGGATCTC
GTTAAGGTCGGGTTGGGTTTCCGCTCGTGCGTCGTCGCTTTTGTAGCCGT
ACAAGGTGCAGTCAGTCCACTGGCGGTGGTGAACGATTTTGAAGGGCTTG
CCACACTGGCGATGGACAAGGACCTCGTAGACGCCTCGGACTTGCTGGTG
CACCCCCTCAGGAATGATCGGAGCGTCCGCCTCAAGGCGCAGGATCTCGT
TAAGGTCGGGTTGGGTTTCCGCTCGTGCGTCGTCGCTTTTGTAGCC
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