mRNA_F-distichus_contig10115.90.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10115.90.1
Unique NamemRNA_F-distichus_contig10115.90.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10115.90.1 vs. uniprot
Match: D7FZ88_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ88_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 7.240e-13
Identity = 53/114 (46.49%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:  100 RSAVAVIPGLGEASRDELGNLEVRFYDGVLVKVDAHAKWMRVE---------------HLASQRRDSHVKESIRKSVTYDLGRRSGSGRGGGDXGDGVDRKPRERMPRDVKERM 396
            R   A IPG+GEA R+  G+LEVRF DGV+V VDA AKWMRVE               H  S    + +     +SVTYDLG+ + +GR     G G  R+  ERMPRDVK+RM
Sbjct: 1228 RRGGASIPGVGEACRNGDGDLEVRFCDGVMVVVDAKAKWMRVERRXXXXXXXXXXXPPHPGS---GAPIPSKTTRSVTYDLGKHA-AGRRKEARGVGGSRELGERMPRDVKDRM 1337
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BLAST of mRNA_F-distichus_contig10115.90.1 vs. uniprot
Match: A0A6H5L179_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L179_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.600e-11
Identity = 54/123 (43.90%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:   76 RDSDRRAR----RSAVAVIPGLGEASRDELGNLEVRFYDGVLVKVDAHAKWMRVEHLASQRRDSH------------VKESIRKSVTYDLGRRSGSGRGGGDXGDGVDRKPRERMPRDVKERM 396
            RD DRR      R   A IPG+GEA R+  G+LEV F DGV+V VDA AKWMRVE                         +  +SVTYDLG+ + +GR     G G  R+  ER+PRDVK RM
Sbjct: 1513 RDEDRRPLPDRGRRGGASIPGVGEAFRNGDGDLEVLFCDGVMVVVDAKAKWMRVERRQXXXXXXXXXXXXXTGSGRPTPSTTTRSVTYDLGKHA-AGRRTEARGIGGSRELGERLPRDVKNRM 1634
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10115.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ88_ECTSI7.240e-1346.49Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5L179_9PHAE5.600e-1143.90Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10115contigF-distichus_contig10115:3136..3699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D7FZ88
KEGG koko:K06660,ko:K08863
KEGG Pathwayko04068,ko04111,ko04113,map04068,map04111,map04113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of centriole replication
EggNOG OGsKOG0575@1,KOG0575@2759
EC2.7.11.21
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Exons2
Model size397
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.9695237-CDS-F-distichus_contig10115:3135..33661622928927.9695237-CDS-F-distichus_contig10115:3135..3366Fucus distichus monoicousCDSF-distichus_contig10115 3136..3366 -
1690885069.2975574-CDS-F-distichus_contig10115:3135..33661690885069.2975574-CDS-F-distichus_contig10115:3135..3366Fucus distichus monoicousCDSF-distichus_contig10115 3136..3366 -
1622928927.9807656-CDS-F-distichus_contig10115:3534..36991622928927.9807656-CDS-F-distichus_contig10115:3534..3699Fucus distichus monoicousCDSF-distichus_contig10115 3535..3699 -
1690885069.4931445-CDS-F-distichus_contig10115:3534..36991690885069.4931445-CDS-F-distichus_contig10115:3534..3699Fucus distichus monoicousCDSF-distichus_contig10115 3535..3699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10115.90.1prot_F-distichus_contig10115.90.1Fucus distichus monoicouspolypeptideF-distichus_contig10115 3136..3699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10115.90.1

>prot_F-distichus_contig10115.90.1 ID=prot_F-distichus_contig10115.90.1|Name=mRNA_F-distichus_contig10115.90.1|organism=Fucus distichus monoicous|type=polypeptide|length=132bp
DSERPATLRDGNGGGGNVKDSRAKDRDSDRRARRSAVAVIPGLGEASRDE
LGNLEVRFYDGVLVKVDAHAKWMRVEHLASQRRDSHVKESIRKSVTYDLG
RRSGSGRGGGDGGDGVDRKPRERMPRDVKERM
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mRNA from alignment at F-distichus_contig10115:3136..3699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10115.90.1 ID=mRNA_F-distichus_contig10115.90.1|Name=mRNA_F-distichus_contig10115.90.1|organism=Fucus distichus monoicous|type=mRNA|length=564bp|location=Sequence derived from alignment at F-distichus_contig10115:3136..3699- (Fucus distichus monoicous)
GACTCTGAGCGACCGGCAACACTCCGGGACGGCAACGGCGGCGGTGGCAA
TGTCAAAGACAGTCGGGCCAAGGATCGCGACTCGGATCGACGGGCGCGAA
GGAGCGCTGTCGCGGTGATTCCCGGACTGGGCGAAGCCTCTCGGGACGAA
CTCGGTAACCTGGAGGTACGTTTGGAGTCTTTGGTGAAAAACATTCCGTT
CCTCAGAGCTTTTCTCCGCGTCTTACGTGATCTTGGCTCAGCGTCCAGCG
TGCACGTCGCGCTCCTACCCCCTCGACCCAAGCGTTCACTCCCTTTGCCC
TCCAATCGCGCCATGCCGATCTCTTATGAACAGGTGCGGTTCTATGACGG
TGTTCTGGTAAAGGTTGACGCCCACGCAAAATGGATGCGTGTGGAGCACC
TGGCATCCCAGAGGCGTGACTCTCATGTCAAAGAAAGTATCCGGAAATCG
GTCACGTACGACCTTGGCAGACGCTCTGGCTCCGGCAGAGGCGGTGGAGA
CGGCGGTGACGGCGTCGACCGGAAACCGAGAGAGCGCATGCCCCGCGATG
TTAAAGAGCGGATG
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Coding sequence (CDS) from alignment at F-distichus_contig10115:3136..3699-

>mRNA_F-distichus_contig10115.90.1 ID=mRNA_F-distichus_contig10115.90.1|Name=mRNA_F-distichus_contig10115.90.1|organism=Fucus distichus monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at F-distichus_contig10115:3136..3699- (Fucus distichus monoicous)
GACTCTGAGCGACCGGCAACACTCCGGGACGGCAACGGCGGCGGTGGCAA
TGTCAAAGACAGTCGGGCCAAGGATCGCGACTCGGATCGACGGGCGCGAA
GGAGCGCTGTCGCGGTGATTCCCGGACTGGGCGAAGCCTCTCGGGACGAA
CTCGGTAACCTGGAGGACTCTGAGCGACCGGCAACACTCCGGGACGGCAA
CGGCGGCGGTGGCAATGTCAAAGACAGTCGGGCCAAGGATCGCGACTCGG
ATCGACGGGCGCGAAGGAGCGCTGTCGCGGTGATTCCCGGACTGGGCGAA
GCCTCTCGGGACGAACTCGGTAACCTGGAGGTGCGGTTCTATGACGGTGT
TCTGGTAAAGGTTGACGCCCACGCAAAATGGATGCGTGTGGAGCACCTGG
CATCCCAGAGGCGTGACTCTCATGTCAAAGAAAGTATCCGGAAATCGGTC
ACGTACGACCTTGGCAGACGCTCTGGCTCCGGCAGAGGCGGTGGAGACGG
CGGTGACGGCGTCGACCGGAAACCGAGAGAGCGCATGCCCCGCGATGTTA
AAGAGCGGATGGTGCGGTTCTATGACGGTGTTCTGGTAAAGGTTGACGCC
CACGCAAAATGGATGCGTGTGGAGCACCTGGCATCCCAGAGGCGTGACTC
TCATGTCAAAGAAAGTATCCGGAAATCGGTCACGTACGACCTTGGCAGAC
GCTCTGGCTCCGGCAGAGGCGGTGGAGACGGCGGTGACGGCGTCGACCGG
AAACCGAGAGAGCGCATGCCCCGCGATGTTAAAGAGCGGATG
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