mRNA_F-distichus_contig101124.88.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101124.88.1
Unique NamemRNA_F-distichus_contig101124.88.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101124.88.1 vs. uniprot
Match: A0A354GIT4_9FLAO (Uncharacterized protein n=1 Tax=Tenacibaculum sp. TaxID=1906242 RepID=A0A354GIT4_9FLAO)

HSP 1 Score: 78.2 bits (191), Expect = 2.520e-16
Identity = 39/111 (35.14%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:    1 QSMLNRIHTLKTIKQLKPNQHLDFLKNCPDECIHAVCEACYNILNQSLKFSKDQKHRLKKKLKPIRDDVRKLSNPKLSVKTKREILRKPQVGKGIFTLLATTVLPALISSL 333
            Q +L ++  LK I Q      +  L    D+CIH +CE C N+L  +    K++   ++++LK  R  +R  S P+ S++ KR+IL   Q+G GIF++LA+T++PAL++++
Sbjct:   10 QEVLTKLEPLKKISQKHRTSIVPLLS---DDCIHKICEGCQNLLQNTFDLDKNKTRIVQRRLKKHRRVMRLFSKPETSIRRKRKILANQQIGSGIFSILASTIIPALVAAI 117
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101124.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A354GIT4_9FLAO2.520e-1635.14Uncharacterized protein n=1 Tax=Tenacibaculum sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101124contigF-distichus_contig101124:1566..1910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.8294542-CDS-F-distichus_contig101124:1565..19041622928927.8294542-CDS-F-distichus_contig101124:1565..1904Fucus distichus monoicousCDSF-distichus_contig101124 1566..1904 -
1690885069.1923656-CDS-F-distichus_contig101124:1565..19041690885069.1923656-CDS-F-distichus_contig101124:1565..1904Fucus distichus monoicousCDSF-distichus_contig101124 1566..1904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.8431675-UTR-F-distichus_contig101124:1904..19101622928927.8431675-UTR-F-distichus_contig101124:1904..1910Fucus distichus monoicousUTRF-distichus_contig101124 1905..1910 -
1690885069.2046957-UTR-F-distichus_contig101124:1904..19101690885069.2046957-UTR-F-distichus_contig101124:1904..1910Fucus distichus monoicousUTRF-distichus_contig101124 1905..1910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101124.88.1prot_F-distichus_contig101124.88.1Fucus distichus monoicouspolypeptideF-distichus_contig101124 1566..1904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101124.88.1

>prot_F-distichus_contig101124.88.1 ID=prot_F-distichus_contig101124.88.1|Name=mRNA_F-distichus_contig101124.88.1|organism=Fucus distichus monoicous|type=polypeptide|length=113bp
MLNRIHTLKTIKQLKPNQHLDFLKNCPDECIHAVCEACYNILNQSLKFSK
DQKHRLKKKLKPIRDDVRKLSNPKLSVKTKREILRKPQVGKGIFTLLATT
VLPALISSLLSK*
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mRNA from alignment at F-distichus_contig101124:1566..1910-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101124.88.1 ID=mRNA_F-distichus_contig101124.88.1|Name=mRNA_F-distichus_contig101124.88.1|organism=Fucus distichus monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at F-distichus_contig101124:1566..1910- (Fucus distichus monoicous)
CAATCAATGCTAAATCGAATCCACACACTTAAAACTATAAAACAACTTAA
ACCAAATCAACATCTAGATTTCTTAAAAAATTGTCCAGATGAATGTATTC
ATGCAGTATGTGAAGCTTGCTACAATATATTGAATCAATCATTGAAGTTT
AGTAAGGATCAAAAACATAGACTAAAAAAGAAATTGAAACCTATCCGTGA
TGATGTTCGTAAATTAAGTAACCCAAAACTATCTGTGAAAACAAAAAGGG
AAATATTACGTAAACCACAAGTAGGTAAAGGTATATTTACTCTATTAGCA
ACAACAGTGTTACCTGCTCTCATTTCTTCTCTCCTCTCAAAATGA
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Coding sequence (CDS) from alignment at F-distichus_contig101124:1566..1910-

>mRNA_F-distichus_contig101124.88.1 ID=mRNA_F-distichus_contig101124.88.1|Name=mRNA_F-distichus_contig101124.88.1|organism=Fucus distichus monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at F-distichus_contig101124:1566..1910- (Fucus distichus monoicous)
ATGCTAAATCGAATCCACACACTTAAAACTATAAAACAACTTAAACCAAA
TCAACATCTAGATTTCTTAAAAAATTGTCCAGATGAATGTATTCATGCAG
TATGTGAAGCTTGCTACAATATATTGAATCAATCATTGAAGTTTAGTAAG
GATCAAAAACATAGACTAAAAAAGAAATTGAAACCTATCCGTGATGATGT
TCGTAAATTAAGTAACCCAAAACTATCTGTGAAAACAAAAAGGGAAATAT
TACGTAAACCACAAGTAGGTAAAGGTATATTTACTCTATTAGCAACAACA
GTGTTACCTGCTCTCATTTCTTCTCTCCTCTCAAAATGAATGCTAAATCG
AATCCACACACTTAAAACTATAAAACAACTTAAACCAAATCAACATCTAG
ATTTCTTAAAAAATTGTCCAGATGAATGTATTCATGCAGTATGTGAAGCT
TGCTACAATATATTGAATCAATCATTGAAGTTTAGTAAGGATCAAAAACA
TAGACTAAAAAAGAAATTGAAACCTATCCGTGATGATGTTCGTAAATTAA
GTAACCCAAAACTATCTGTGAAAACAAAAAGGGAAATATTACGTAAACCA
CAAGTAGGTAAAGGTATATTTACTCTATTAGCAACAACAGTGTTACCTGC
TCTCATTTCTTCTCTCCTCTCAAAATGA
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