mRNA_F-distichus_contig101043.82.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101043.82.1
Unique NamemRNA_F-distichus_contig101043.82.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101043.82.1 vs. uniprot
Match: D8LD91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.060e-24
Identity = 51/66 (77.27%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    7 IESCRKITSIAGYRGADLLLTTEWGRGVEVDLPERCFEELKAAGISAPAAVGSEAVSELAVAVKPR 204
            +ESCRK++++AGY GADLLL+TEWGRG+EVDLPERCF+EL AA + APAAVGSEAV++LAVAVKPR
Sbjct:   56 LESCRKVSAMAGYGGADLLLSTEWGRGMEVDLPERCFQELSAASV-APAAVGSEAVAKLAVAVKPR 120
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BLAST of mRNA_F-distichus_contig101043.82.1 vs. uniprot
Match: A0A836CFA8_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFA8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.580e-12
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 EDIESCRKITSIAGYRGADLLLTTEWGRGVEVDLPERCFEELKAAGISAPAAVGSEAVSELAVAVKPR 204
            ED+E+ R   +  GYRGAD+LLT+EW RG + DLP+     LK+ G++A A VGS A +++AVA +PR
Sbjct:  126 EDLEAARTNANRGGYRGADVLLTSEWPRGFDADLPDAAIAHLKSVGVAA-AGVGSAAAADMAVATRPR 192
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BLAST of mRNA_F-distichus_contig101043.82.1 vs. uniprot
Match: A0A6H5KVH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.450e-10
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   82 RGVEVDLPERCFEELKAAGISAPAAVGSEAVSELAVAVKPR 204
            +G+EVDLPERCF+EL A G+ APAAVGSEAV++LAVAVKPR
Sbjct:  126 KGMEVDLPERCFQELSAGGV-APAAVGSEAVAKLAVAVKPR 165
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101043.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD91_ECTSI1.060e-2477.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFA8_9STRA3.580e-1250.00CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A6H5KVH2_9PHAE9.450e-1078.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101043contigF-distichus_contig101043:1862..2065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D8LD91
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA binding
EggNOG OGsKOG2476@1,KOG2476@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.5073283-CDS-F-distichus_contig101043:1861..20651622928927.5073283-CDS-F-distichus_contig101043:1861..2065Fucus distichus monoicousCDSF-distichus_contig101043 1862..2065 -
1690885068.975306-CDS-F-distichus_contig101043:1861..20651690885068.975306-CDS-F-distichus_contig101043:1861..2065Fucus distichus monoicousCDSF-distichus_contig101043 1862..2065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101043.82.1prot_F-distichus_contig101043.82.1Fucus distichus monoicouspolypeptideF-distichus_contig101043 1862..2065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101043.82.1

>prot_F-distichus_contig101043.82.1 ID=prot_F-distichus_contig101043.82.1|Name=mRNA_F-distichus_contig101043.82.1|organism=Fucus distichus monoicous|type=polypeptide|length=68bp
EDIESCRKITSIAGYRGADLLLTTEWGRGVEVDLPERCFEELKAAGISAP
AAVGSEAVSELAVAVKPR
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mRNA from alignment at F-distichus_contig101043:1862..2065-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101043.82.1 ID=mRNA_F-distichus_contig101043.82.1|Name=mRNA_F-distichus_contig101043.82.1|organism=Fucus distichus monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at F-distichus_contig101043:1862..2065- (Fucus distichus monoicous)
GAAGACATTGAATCCTGCCGCAAGATAACGTCGATTGCGGGGTATCGGGG
AGCAGACCTCCTCCTCACGACGGAATGGGGCCGCGGGGTGGAAGTGGACC
TCCCGGAGCGGTGCTTCGAGGAGCTCAAGGCCGCCGGCATTTCCGCCCCC
GCGGCCGTCGGAAGCGAGGCTGTCTCGGAGCTAGCGGTGGCGGTCAAGCC
CAGG
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Coding sequence (CDS) from alignment at F-distichus_contig101043:1862..2065-

>mRNA_F-distichus_contig101043.82.1 ID=mRNA_F-distichus_contig101043.82.1|Name=mRNA_F-distichus_contig101043.82.1|organism=Fucus distichus monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at F-distichus_contig101043:1862..2065- (Fucus distichus monoicous)
GAAGACATTGAATCCTGCCGCAAGATAACGTCGATTGCGGGGTATCGGGG
AGCAGACCTCCTCCTCACGACGGAATGGGGCCGCGGGGTGGAAGTGGACC
TCCCGGAGCGGTGCTTCGAGGAGCTCAAGGCCGCCGGCATTTCCGCCCCC
GCGGCCGTCGGAAGCGAGGCTGTCTCGGAGCTAGCGGTGGCGGTCAAGCC
CAGGGAAGACATTGAATCCTGCCGCAAGATAACGTCGATTGCGGGGTATC
GGGGAGCAGACCTCCTCCTCACGACGGAATGGGGCCGCGGGGTGGAAGTG
GACCTCCCGGAGCGGTGCTTCGAGGAGCTCAAGGCCGCCGGCATTTCCGC
CCCCGCGGCCGTCGGAAGCGAGGCTGTCTCGGAGCTAGCGGTGGCGGTCA
AGCCCAGG
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