mRNA_F-distichus_contig101020.81.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101020.81.1
Unique NamemRNA_F-distichus_contig101020.81.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: D7FHC3_ECTSI (Amino acid-binding ACT/ Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC3_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.380e-32
Identity = 80/177 (45.20%), Postives = 103/177 (58.19%), Query Frame = 1 
Query:   16 LFCDGAAQISDFGTSHWTEQTKSKSVQSNCRTSGTAWFDTLTFRWAAPEVMQNKHTLFLHVELGRGYMVLS--ASEEQQLTRRQARTTPVAASPRPTTRLSFKSDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRL 540
            L  D  A+ISDFGTSHWTEQTKS  VQS  +T GT  F+  TF WAAPEV+++        +L R  + +S    E  Q  RR +     A  P     LSFKSDVYSF ++ WE+LS + PW+ +S  E+   VC   +RP +P  AP +LA L ++CW  SP  RPT  QI+  L
Sbjct: 1049 LDADCRAKISDFGTSHWTEQTKSNCVQS--QTPGTGGFNHFTFHWAAPEVLEHGSA---SEQLRRASLDISQPGHEHHQADRRSSPLAEEATLPG----LSFKSDVYSFGVVVWEVLSRQAPWEHVSWTELVRRVCMTCERPPLPLSAPAELAVLARECWAHSPRDRPTCDQIVAHL 1216
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: A0A6H5JKX0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKX0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.150e-30
Identity = 77/176 (43.75%), Postives = 97/176 (55.11%), Query Frame = 1 
Query:   16 LFCDGAAQISDFGTSHWTEQTKSKSVQSNCRTSGTAWFDTLTFRWAAPEVMQNKHTLFLHVELGR-GYMVLSASEEQQLTRRQARTTPVAASPRPTTRLSFKSDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRL 540
            L  D  A+ISDFGTSHW EQTKSK +QS  +  GT  F+  TF WAAPEV+ +  T        R G +     E  Q  RR +     A  P     LSF SDVYSF I+ WE+LS + PW+ +S  E++  VC   +RP +P  AP DLA L + CW   P  RPT  +I+  L
Sbjct: 1024 LDADCRAKISDFGTSHWMEQTKSKCLQS--QPPGTGGFNHFTFHWAAPEVLAHGSTSEQLRRASRDGDIGQPGHEHHQTDRRSSPLAQEATGPA----LSFMSDVYSFGIVVWEVLSRQAPWEHVSWTELFRRVCITGERPPLPPSAPVDLAVLARACWTHEPRDRPTCDKIVAHL 1193
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: D7G7X9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.330e-15
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:  256 RQARTTPVAASPRPTTRLSFK---------------SDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRLGRNRR 555
            R A T     +P P+T +SF                 DVYSF ++AWE+L+ + PWD+    +IY+ V  +++RP IP GAP D+AE+V++CW   P+ RPT   + +R   +RR
Sbjct: 1263 RSAETVTNNTNPGPSTHISFAWTAPEVLETKETSKAGDVYSFGMVAWEVLTRQTPWDQARPRDIYLGVVMREERPAIPAGAPVDIAEMVRKCWAQEPKDRPTFPVLCNRGNAHRR 1377
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: A0A6H5K914_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K914_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.550e-14
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  319 SDVYSFAIIAWEILSLKVPW-DKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPT 516
            SDVYSF ++AWE+L+ + PW D+    +IY+ V  +++RP +P G P D+AE+V+ CW   PE RPT
Sbjct:   23 SDVYSFGMVAWEVLTRQTPWADQARPRDIYLRVVMREERPAMPAGGPVDIAEMVRSCWAQEPEDRPT 89
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.090e-14
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  310 SFKSDVYSFAIIAWEILSLKVPWDKL-SSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRLGRN 549
            ++ SDVYSF I+AWE+LS ++PW  +    E+Y+ V   + RP IP  AP D+A +++ CW   PE RPTS  I++R+  N
Sbjct: 1126 TYASDVYSFGIVAWEVLSRELPWASVVHPREVYIRVVLNELRPEIPADAPADIATIMRACWAGDPEARPTSSAIMERIESN 1206
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: F2ELI1_HORVV (Predicted protein (Fragment) n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2ELI1_HORVV)

HSP 1 Score: 74.7 bits (182), Expect = 7.410e-14
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  316 KSDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRL 540
            KSDVYS+ ++ WE+++ K+PWD L+  +I   V     R  IP    P  A +++ CWD+ P+RRP+ +++L+RL
Sbjct:   43 KSDVYSYGVVLWELVTQKIPWDTLNPIQIIAAVGFMDHRLEIPSNTDPQWASIIESCWDSDPQRRPSFQELLERL 117
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: A0A199VAN9_ANACO (Serine/threonine-protein kinase CTR1 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VAN9_ANACO)

HSP 1 Score: 77.8 bits (190), Expect = 2.010e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  316 KSDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRL 540
            K DVYSF +I WE+L++K PW  LS  ++   V  +  R T+P+GA PDLA LV+ CW   P++RP+   I+D L
Sbjct:  408 KCDVYSFGVILWELLTMKQPWSGLSPAQVVGAVAFQNRRLTLPQGASPDLAALVESCWADDPKQRPSFSSIVDTL 482
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BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: A0A453PNS3_AEGTS (Protein kinase domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PNS3_AEGTS)

HSP 1 Score: 72.4 bits (176), Expect = 3.320e-13
Identity = 27/78 (34.62%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:  307 LSFKSDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRL 540
            + ++SDV+S+ ++ WE+ + K+PWD L++ ++   V     R  IP    P  A +++ CW++ P+RRP+ R++L+RL
Sbjct:    8 IKYRSDVFSYGVVLWELATQKIPWDTLNTMQVIGAVGFMDHRLEIPSDVDPQWASMIESCWESEPQRRPSFRELLERL 85
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: A0A2I1GYB3_9GLOM (Kinase-like protein (Fragment) n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1GYB3_9GLOM)

HSP 1 Score: 72.0 bits (175), Expect = 5.290e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  319 SDVYSFAIIAWEILSLKVPWDKLSSGE-IYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRL 540
            +D+YSFA+I WE  S + P+ KL+    + + +C K  RPTI +  P    +L+QQCWDA PE+RP + Q+  +L
Sbjct:   18 ADIYSFAMIMWEFSSQQPPFGKLAHDHNLVIEICKKHRRPTIAKATPQCWIDLMQQCWDADPEKRPAAMQVFQKL 92
[Close]
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Match: A0A453HU38_AEGTS (Protein kinase domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453HU38_AEGTS)

HSP 1 Score: 70.9 bits (172), Expect = 1.010e-12
Identity = 27/75 (36.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  316 KSDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEGAPPDLAELVQQCWDASPERRPTSRQILDRL 540
            +SDVYS+ ++ WE+++ K+PWD L++ ++   V     R  IP    P    +++ CWD+ P+RRP+ +++L+RL
Sbjct:    2 RSDVYSYGVVLWELVTQKIPWDTLNTMQVIGAVGFMDHRLEIPSDIDPQWVSMIESCWDSDPQRRPSFQELLERL 76
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101020.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHC3_ECTSI4.380e-3245.20Amino acid-binding ACT/ Hypothetical leucine rich ... [more]
A0A6H5JKX0_9PHAE6.150e-3043.75Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7X9_ECTSI3.330e-1537.39Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K914_9PHAE1.550e-1447.76Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KY76_9PHAE7.090e-1444.44Protein kinase domain-containing protein n=1 Tax=E... [more]
F2ELI1_HORVV7.410e-1440.00Predicted protein (Fragment) n=1 Tax=Hordeum vulga... [more]
A0A199VAN9_ANACO2.010e-1346.67Serine/threonine-protein kinase CTR1 n=1 Tax=Anana... [more]
A0A453PNS3_AEGTS3.320e-1334.62Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A2I1GYB3_9GLOM5.290e-1342.67Kinase-like protein (Fragment) n=1 Tax=Rhizophagus... [more]
A0A453HU38_AEGTS1.010e-1236.00Protein kinase domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101020contigF-distichus_contig101020:285..1871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue3.7e-30
Seed eggNOG ortholog2880.D7FHC3
KEGG koko:K17535
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons3
Model size558
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101020.81.1prot_F-distichus_contig101020.81.1Fucus distichus monoicouspolypeptideF-distichus_contig101020 285..1871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.4546335-CDS-F-distichus_contig101020:284..4731622928927.4546335-CDS-F-distichus_contig101020:284..473Fucus distichus monoicousCDSF-distichus_contig101020 285..473 -
1690885068.9218452-CDS-F-distichus_contig101020:284..4731690885068.9218452-CDS-F-distichus_contig101020:284..473Fucus distichus monoicousCDSF-distichus_contig101020 285..473 -
1622928927.4649556-CDS-F-distichus_contig101020:1140..12901622928927.4649556-CDS-F-distichus_contig101020:1140..1290Fucus distichus monoicousCDSF-distichus_contig101020 1141..1290 -
1690885068.940638-CDS-F-distichus_contig101020:1140..12901690885068.940638-CDS-F-distichus_contig101020:1140..1290Fucus distichus monoicousCDSF-distichus_contig101020 1141..1290 -
1622928927.4746377-CDS-F-distichus_contig101020:1652..18711622928927.4746377-CDS-F-distichus_contig101020:1652..1871Fucus distichus monoicousCDSF-distichus_contig101020 1653..1871 -
1690885068.9583313-CDS-F-distichus_contig101020:1652..18711690885068.9583313-CDS-F-distichus_contig101020:1652..1871Fucus distichus monoicousCDSF-distichus_contig101020 1653..1871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101020.81.1

>prot_F-distichus_contig101020.81.1 ID=prot_F-distichus_contig101020.81.1|Name=mRNA_F-distichus_contig101020.81.1|organism=Fucus distichus monoicous|type=polypeptide|length=186bp
MHFTALFCDGAAQISDFGTSHWTEQTKSKSVQSNCRTSGTAWFDTLTFRW
AAPEVMQNKHTLFLHVELGRGYMVLSASEEQQLTRRQARTTPVAASPRPT
TRLSFKSDVYSFAIIAWEILSLKVPWDKLSSGEIYVHVCGKQDRPTIPEG
APPDLAELVQQCWDASPERRPTSRQILDRLGRNRR*
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mRNA from alignment at F-distichus_contig101020:285..1871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101020.81.1 ID=mRNA_F-distichus_contig101020.81.1|Name=mRNA_F-distichus_contig101020.81.1|organism=Fucus distichus monoicous|type=mRNA|length=1587bp|location=Sequence derived from alignment at F-distichus_contig101020:285..1871- (Fucus distichus monoicous)
ATGCACTTTACCGCCCTGTTTTGCGATGGAGCCGCGCAGATTTCGGACTT
TGGGACGTCACACTGGACGGAGCAGACAAAGTCCAAGTCGGTTCAGTCCA
ACTGCAGAACTTCCGGCACCGCTTGGTTCGATACCTTGACGTTTCGCTGG
GCGGCGCCCGAGGTAATGCAAAACAAGCACACCCTTTTTCTACATGTAGA
GCTAGGTCGTGGCTACATGGTAACTCGTGGTTCGATTAGTTGGTGTTTTG
CTCTGCGGTGCCGAAGATGACGCAACAATACGCTTTCCTACGTGTGGGAC
TATAATAGTTAACAGCGACATGGAACTCGTCAGCAAAGTCTTAGGCCGCT
CTAGGGGCTGTTTATTCTGTCCTGGAGACTATTCCCAAACGTTAGCCCTC
TGTATGTCTAAGGGTTTCGATATATTAGCGATTGATTCACGTTACGGAAA
CCTCTGACAATCTCAAACCCCAGTCGAAACAATCAAAAGGCTCTTCGACG
CAAACGATTGTTTGCTCTTCCAGTCTACCGACCGCATCTCGGCGATGATG
CATCCGCGTCTTGCTCGCTAACGCGTGTCAGGTGTTGAGCGCCTCCGAGG
AGCAGCAGTTGACGAGACGACAAGCGCGGACGACGCCGGTTGCAGCGAGC
CCTCGGCCCACCACCCGTCTTAGCTTCAAGAGCGACGTGTACAGCTTCGC
CATCATCGCATGGGAAATTCTGTCCTTGAAGGTAAGGTGCACATTGAAAC
GTGCCGGCTGTTGTACCACTTGCCTGTTTCGCGCCTTCAACTACTGTACC
AGAGCTATTGTACAGGCGCAGTGGGTGAAGCATGATTTGTCTTGCATGGG
AGTGTGTATCGGCGAGCCATGAAACAGTTGGCAGCTGTTGCCCCTCTCTC
TAAGGCAGTCGTTGCTGCGCTATTCCGCATCGCCAATCGTATCACCTCCC
CAATATTAGATGGCAACAAGTGCGAAGTAAAAGCGCTATGTCGACGCCAA
TATAATCCTAGATATGTTTGGGCTTCTCACGCCGACGAAACAGAGGCCCC
ATCGCTCGTTGGATCGTCCAAAATTCTGTCCATTGCTTGGATCATACGTT
TCAATACTTGAACTATTAATAGGGCCGATTATCTCATTGAACTCCGCCCG
ATCTTTTCACGAAAGTGGCCAAACATCGCTCCTACCGAGGCCAAGATTTT
CACTGTACTTTTTCCTACACACAAAACACACAGACACACGCGGTTGTGTG
CAATTTAATAAATACAAAGACATAAAACACACACACACACACACACACAC
ACAATACACCCAATACACCCACGTATGCAAATTAATTTGGTGAACTCTCT
CGACTGACCGCGCGCGAATGTGTGCGACTTACTCCCGTATCTCTCAAGGT
CCCATGGGACAAACTTTCGAGCGGAGAGATTTACGTTCATGTCTGCGGGA
AACAAGATCGCCCGACAATCCCGGAAGGCGCCCCCCCGGATCTGGCTGAA
TTGGTACAGCAATGCTGGGACGCCTCCCCGGAGAGGAGACCCACAAGCAG
ACAAATTTTGGACCGCCTCGGGAGGAATAGGCGTTAG
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Coding sequence (CDS) from alignment at F-distichus_contig101020:285..1871-

>mRNA_F-distichus_contig101020.81.1 ID=mRNA_F-distichus_contig101020.81.1|Name=mRNA_F-distichus_contig101020.81.1|organism=Fucus distichus monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at F-distichus_contig101020:285..1871- (Fucus distichus monoicous)
ATGCACTTTACCGCCCTGTTTTGCGATGGAGCCGCGCAGATTTCGGACTT
TGGGACGTCACACTGGACGGAGCAGACAAAGTCCAAGTCGGTTCAGTCCA
ACTGCAGAACTTCCGGCACCGCTTGGTTCGATACCTTGACGTTTCGCTGG
GCGGCGCCCGAGGTAATGCAAAACAAGCACACCCTTTTTCTACATGTAGA
GCTAGGTCGTGGCTACATGATGCACTTTACCGCCCTGTTTTGCGATGGAG
CCGCGCAGATTTCGGACTTTGGGACGTCACACTGGACGGAGCAGACAAAG
TCCAAGTCGGTTCAGTCCAACTGCAGAACTTCCGGCACCGCTTGGTTCGA
TACCTTGACGTTTCGCTGGGCGGCGCCCGAGGTAATGCAAAACAAGCACA
CCCTTTTTCTACATGTAGAGCTAGGTCGTGGCTACATGGTGTTGAGCGCC
TCCGAGGAGCAGCAGTTGACGAGACGACAAGCGCGGACGACGCCGGTTGC
AGCGAGCCCTCGGCCCACCACCCGTCTTAGCTTCAAGAGCGACGTGTACA
GCTTCGCCATCATCGCATGGGAAATTCTGTCCTTGAAGGTGTTGAGCGCC
TCCGAGGAGCAGCAGTTGACGAGACGACAAGCGCGGACGACGCCGGTTGC
AGCGAGCCCTCGGCCCACCACCCGTCTTAGCTTCAAGAGCGACGTGTACA
GCTTCGCCATCATCGCATGGGAAATTCTGTCCTTGAAGGTCCCATGGGAC
AAACTTTCGAGCGGAGAGATTTACGTTCATGTCTGCGGGAAACAAGATCG
CCCGACAATCCCGGAAGGCGCCCCCCCGGATCTGGCTGAATTGGTACAGC
AATGCTGGGACGCCTCCCCGGAGAGGAGACCCACAAGCAGACAAATTTTG
GACCGCCTCGGGAGGAATAGGCGTTAGGTCCCATGGGACAAACTTTCGAG
CGGAGAGATTTACGTTCATGTCTGCGGGAAACAAGATCGCCCGACAATCC
CGGAAGGCGCCCCCCCGGATCTGGCTGAATTGGTACAGCAATGCTGGGAC
GCCTCCCCGGAGAGGAGACCCACAAGCAGACAAATTTTGGACCGCCTCGG
GAGGAATAGGCGTTAG
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