mRNA_F-distichus_contig100993.78.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100993.78.1
Unique NamemRNA_F-distichus_contig100993.78.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig100993.78.1 vs. uniprot
Match: A0A6H5KWP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-13
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 RADLAQRHLKELMNRDLAQVKADVMQEEKFDIAKVHDEITELEKR 135
            R DLAQRHLKELM RDL QVKADV  EEKFD AK+HDEITELEKR
Sbjct:  122 RYDLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKR 166
[Close]
BLAST of mRNA_F-distichus_contig100993.78.1 vs. uniprot
Match: D7FZX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.050e-13
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    4 ADLAQRHLKELMNRDLAQVKADVMQEEKFDIAKVHDEITELEKR 135
            +DLAQRHLKELM RDL QVKADV  EEKFD AK+HDEITELEKR
Sbjct:  109 SDLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKR 152
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100993.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWP7_9PHAE1.790e-1384.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZX0_ECTSI2.050e-1384.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100993contigF-distichus_contig100993:131..265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog2880.D7FZX0
KEGG koko:K22137
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF1640)
EggNOG OGs29YXM@1,2RXUY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.1516933-CDS-F-distichus_contig100993:130..2651622928927.1516933-CDS-F-distichus_contig100993:130..265Fucus distichus monoicousCDSF-distichus_contig100993 131..265 -
1690885068.7046123-CDS-F-distichus_contig100993:130..2651690885068.7046123-CDS-F-distichus_contig100993:130..265Fucus distichus monoicousCDSF-distichus_contig100993 131..265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100993.78.1prot_F-distichus_contig100993.78.1Fucus distichus monoicouspolypeptideF-distichus_contig100993 131..265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100993.78.1

>prot_F-distichus_contig100993.78.1 ID=prot_F-distichus_contig100993.78.1|Name=mRNA_F-distichus_contig100993.78.1|organism=Fucus distichus monoicous|type=polypeptide|length=45bp
RADLAQRHLKELMNRDLAQVKADVMQEEKFDIAKVHDEITELEKR
back to top

mRNA from alignment at F-distichus_contig100993:131..265-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100993.78.1 ID=mRNA_F-distichus_contig100993.78.1|Name=mRNA_F-distichus_contig100993.78.1|organism=Fucus distichus monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at F-distichus_contig100993:131..265- (Fucus distichus monoicous)
CGTGCAGATCTCGCTCAGCGACACCTCAAGGAGTTGATGAACAGAGACCT
CGCCCAAGTAAAGGCCGACGTGATGCAGGAGGAGAAGTTCGACATCGCCA
AGGTTCACGACGAGATCACCGAGCTGGAAAAACGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig100993:131..265-

>mRNA_F-distichus_contig100993.78.1 ID=mRNA_F-distichus_contig100993.78.1|Name=mRNA_F-distichus_contig100993.78.1|organism=Fucus distichus monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at F-distichus_contig100993:131..265- (Fucus distichus monoicous)
CGTGCAGATCTCGCTCAGCGACACCTCAAGGAGTTGATGAACAGAGACCT
CGCCCAAGTAAAGGCCGACGTGATGCAGGAGGAGAAGTTCGACATCGCCA
AGGTTCACGACGAGATCACCGAGCTGGAAAAACGACGTGCAGATCTCGCT
CAGCGACACCTCAAGGAGTTGATGAACAGAGACCTCGCCCAAGTAAAGGC
CGACGTGATGCAGGAGGAGAAGTTCGACATCGCCAAGGTTCACGACGAGA
TCACCGAGCTGGAAAAACGA
back to top