mRNA_F-distichus_contig100925.75.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100925.75.1
Unique NamemRNA_F-distichus_contig100925.75.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: A0A6H5KPW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW3_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.110e-68
Identity = 154/299 (51.51%), Postives = 169/299 (56.52%), Query Frame = 1
Query:    1 GIVSPVDMVFATDWPPPGSTALTEEPVMYIGPDSIGLVQHAP---------------------------------------------RFRT-ERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSR-------RFRAAVGDLYGA--EAQGQGFPLPRA-----ADG---------------------------------APSSSYDLILANPPFVPVPPRLGRAKRRYDGFAYGGASGEEVLSRIFCEAVERLRPG-GVLADVTELANPRDFGAKLGRWI 615
            G+V+  DMVFATDWPPPGSTALTEEPVMYIGPDSIGLVQH P                                             R+R  E ILDLC GSGVQGIAAA LRGG A VTCVDINPRAVRF+RFNA LNGL++        RFRA VGDLYGA     G  F   RA     ADG                                 + SS YDLILANPPFVPVPPRL  A+RRYD FA GG++GE+V+  IF  A +RLRPG G+LA V+ELANPR F AKL  WI
Sbjct:  476 GVVAASDMVFATDWPPPGSTALTEEPVMYIGPDSIGLVQHVPPKSRRGQVEMPERATVVPPQAGSEGGSGKDLDSQCAGGESGDRRRRYRAPEEILDLCSGSGVQGIAAAVLRGGEASVTCVDINPRAVRFSRFNALLNGLNTGGGEEEGGRFRAVVGDLYGALDSTVGDRFSADRAGGLPDADGDNDLTGNERGGHQPSPGAGTSGATPTTRTPASSSSSSLYDLILANPPFVPVPPRLASARRRYDVFASGGSNGEKVIEGIFRGAFDRLRPGSGLLAMVSELANPRTFDAKLRCWI 774          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: A0A7S4KP11_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KP11_GUITH)

HSP 1 Score: 199 bits (505), Expect = 9.710e-56
Identity = 123/268 (45.90%), Postives = 161/268 (60.07%), Query Frame = 1
Query:   22 MVFATDWPPPGSTALTEEPVMYIGPDSIGLVQHAPRFRTERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSRRFRAAVGDLYGAEAQGQGFPLPRAADGAPSSS-YDLILANPPFVPVPPRLGRAKRRYDGFAYGGASGEEVLSRIFCEAVERLRPGGVLADVTELANPRDFGAKLGRWIV-APPRPDGRAVPGACHGCEAVVFHEERLWSAAEYSAKRAGSEKEARGWAGHLDLVGIEEMAPGFIFVR 819
            ++  TD  PP S AL EEPVMYIGPDS+GLV HAPR   E +LDLCCGSG+QGIAAA L G   +VTCVDIN RAVRFARFNA +NG+ SR  +   GDLY    +  G  +   ++   S   +++IL+NPPFVPVP  L +  +RY+ FA GG  GE VL RI   A   L  GG +A VTE+        ++ RW++ + P  + R        C   V  EE +++ A YS  RAG++ E   W  HL  + IE +  G+IF++
Sbjct:  354 LLMVTDLMPPCSAALEEEPVMYIGPDSLGLVHHAPRKEEEAVLDLCCGSGIQGIAAAKLYGK--QVTCVDINERAVRFARFNAMINGVASR-VKVLQGDLYDFHEK-MGHEMGSESEVVMSQRRFNVILSNPPFVPVPFDLKKRVKRYNVFADGGEDGEAVLKRIITGASRHLAAGGRVAIVTEIFCAHLLPERMKRWLIESSPLSESRG--RRRWRCLVHVDKEENMYTPATYSEARAGNKVERLEWEEHLKKMRIETVGRGYIFLK 615          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: D8LCV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV5_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 5.840e-54
Identity = 135/274 (49.27%), Postives = 146/274 (53.28%), Query Frame = 1
Query:   79 VMYIGPDSIGLVQHAP---------------------------------------------RFRT-ERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSR-------RFRAAVGDLYGA-----------EAQGQGFP----------------LPRAADG--------------APSSSYDLILANPPFVPVPPRLGRAKRRYDGFAYGGASGEEVLSRIFCEAVERLRPG-GVLADVTELANPRDFGAKLGRWI 615
            VMYIGPDSIGLVQH P                                             R R  E ILDLC GSGVQGIAAA LR G A VTCVDINPRAVRF+RFNA LNGLD+        RFRA VGDLYGA           ++ G GFP                 P   DG              + SS YDLILANPPFVPVPPRL  A+RRYD FA GG++GEEV+  IF  A +RLRPG G+LA VTELANPR F AKL RWI
Sbjct:  235 VMYIGPDSIGLVQHVPPKSRRGQGEMPESATVVPPQARSGGEDGKGLDRQCVGGESGGQRRRHRAPEEILDLCSGSGVQGIAAAVLRRGEASVTCVDINPRAVRFSRFNALLNGLDTGGGEQEGGRFRAVVGDLYGALDSTVGDRVSADSAG-GFPDADDDNDLNGSESGGHQPSPGDGTSGATPTTRTPASSSSSSLYDLILANPPFVPVPPRLASARRRYDVFASGGSNGEEVIEGIFRGAFDRLRPGSGLLAMVTELANPRAFDAKLRRWI 507          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: L1IFL4_GUITC (MTS domain-containing protein n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFL4_GUITC)

HSP 1 Score: 188 bits (478), Expect = 3.450e-53
Identity = 123/285 (43.16%), Postives = 161/285 (56.49%), Query Frame = 1
Query:   22 MVFATDWPPPGSTALTEEPVMYIGPDSIGLVQHAPRFRTERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSRRFRAAVGDLYGAEAQGQGFPLPRAADGAPSSS-YDLILANPPFVPVPPRLGRAKRRYDGFA-----------------YGGASGEEVLSRIFCEAVERLRPGGVLADVTELANPRDFGAKLGRWIV-APPRPDGRAVPGACHGCEAVVFHEERLWSAAEYSAKRAGSEKEARGWAGHLDLVGIEEMAPGFIFVR 819
            ++  TD  PP S AL EEPVMYIGPDS+GLV HAPR   E +LDLCCGSG+QGIAAA L G   +VTCVDIN RAVRFARFNA +NG+ SR  +   GDLY    +  G  +   ++   S   +++IL+NPPFVPVP  L +  +RY+ FA                  GG  GE VL RI   A   L  GG +A VTE+        ++ RW++ + P  + R        C   V  EE +++ A YS  RAG++ E   W  HL  + IE +  G+IF++
Sbjct:  171 LLMVTDLMPPCSAALEEEPVMYIGPDSLGLVHHAPRREEEAVLDLCCGSGIQGIAAAKLYGK--QVTCVDINERAVRFARFNAMINGVASR-VKVLQGDLYDFHEK-MGHEMGSESEVVMSQRRFNVILSNPPFVPVPFDLKKRVKRYNVFADGRNENTRVKQIRLILVAGGEDGEAVLKRIITGASRHLAAGGRVAIVTEIFCAHLLPERMKRWLIESSPLSESRG--RRRWRCLVHVDKEENMYTPATYSEARAGNKVERLEWEEHLKKMRIETVGRGYIFLK 449          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: A0A7S2SRA9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRA9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.710e-51
Identity = 129/312 (41.35%), Postives = 159/312 (50.96%), Query Frame = 1
Query:   16 VDMVFATDWPPPGSTALTEEPVMYIGPDSIGLVQHAPRFRT----------------ERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGL-------DSRRFRAA---VGDLYGAEAQGQGFPLPRAADGAPSSS---YDLILANPPFVPVPPRLGRAKRRYDGFAYGGASGEEVLSRIFCEAVERL---------RPGGVLAD------VTELANPRDFGAKLGRWIVAPPRPDGRAVPGACHGCEAVVFHEERLWSAAEYSAKRAGSEKEARGWAGHLDLVGIEEMAPGFIFVR 819
            VDM  ATDW PP +  L E PVMYIGPDS+ L++H PR  +                E  LDLCCGSGVQG+ A  + G    VT VD+NPRAVRF+RFNAA+NG         S  F       GDLY A        LP   DG   S    Y +ILANPPFVPVPP L +   RYD FA GGA+G+EVL R+   A++ L         R G  L D      V+E+  PR +   +   IV       RAV      C A + H+   +SA  Y+ +R+ S KE   W  HLD  GI EM+   +F+ 
Sbjct:   19 VDMWLATDWCPPLAVDLRESPVMYIGPDSMALLRHLPRRTSWPKSTPHEVAPIGGPPEAWLDLCCGSGVQGLGAL-VSGRADTVTFVDVNPRAVRFSRFNAAMNGFAQATGVDSSSAFPGCQFFTGDLYNA--------LPTTKDGLVESHQNRYQVILANPPFVPVPPDLNKEYHRYDVFADGGAAGDEVLRRVVEGAMKHLDLGGDEHAHRGGAALRDTGKVFIVSEVPQPRSYVEDVLGPIVT------RAVGE--RPCVAALVHDHPPFSAVTYARRRSSSPKELEAWTAHLDAHGITEMSNALVFLH 313          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: A0A836C8B5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8B5_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.020e-45
Identity = 115/256 (44.92%), Postives = 134/256 (52.34%), Query Frame = 1
Query:   82 MYIGPDSIGLVQH--APRFRTER-----ILDLCCGSGVQGIAAAAL---RGGNARVTCVDINPRAVRFARFNAALNGLDSRRFRAAVGDLYGAEAQGQGFPLPRAADGAPSSSYDLILANPPFVPVPPRLGRAKRRYDGFAYG-GASGEEVLSRIFCEAVERLRPGGVLADVTELANPRDFGAKLGRWIVAPPRPDGRAVPGACHGCEAVVFHEERLWSAAEYSAKRAGSEKEARGWAGHLDLVGIEEMAPGFIFV 816
            MYI   S+ LVQH  A R R E      +LDLCCGSGVQGIAAAA    RGG   VT VD++ RAVRF RFNAALNGL +R   A  GDLY             +A G    +Y  ILANPPFVPVPP L     RYD FA G GA GE VL  +   A   LRPGG LA V+E+A+   F   L +W  +              G  A     +   SA EY  +RAGS  E   W  HL    IE ++  F++V
Sbjct:    1 MYISTCSVALVQHWHAARQRLETALPETVLDLCCGSGVQGIAAAAAAAARGGECSVTAVDVSARAVRFTRFNAALNGL-ARCVTAVQGDLY-------------SASGIGDRTYAAILANPPFVPVPPALNAISNRYDVFAAGPGARGEGVLRGVIEGACAHLRPGGTLAIVSEVADVERFVGALPQWWSS--------------GSSAQDSVLQPAMSALEYCQRRAGSSNEVEAWVTHLASESIESLSQAFMWV 228          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: A0A8J7YZ50_9CYAN (Methyltransferase n=1 Tax=Myxacorys almedinensis A TaxID=2690445 RepID=A0A8J7YZ50_9CYAN)

HSP 1 Score: 149 bits (376), Expect = 5.240e-37
Identity = 89/183 (48.63%), Postives = 110/183 (60.11%), Query Frame = 1
Query:   64 LTEEPVMYIGPDSIGLVQHAPRFRTERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSRRFRAAVGDLYGAEAQGQGFPLPRAADGAPSSSYDLILANPPFVPVPPRLGRAKRRYDGFAYGGASGEEVLSRIFCEAVERLRPGGVLADVTELANPRDFGAKLGRW 612
            L+E+PVMYIG DS+GLV  AP+    R+LDLCCGSGVQG+ A+        V  VDINPRA+RF+RFNA LNG+D+ RF   +GDLY A                 S  ++ ILANPPFVP P R  R       F  GGA+GE++L+RI  E+   L P G L  VT+L N   + AKL RW
Sbjct:  873 LSEDPVMYIGMDSLGLVHTAPQSTVSRVLDLCCGSGVQGLVASRYAR---EVLSVDINPRAIRFSRFNAQLNGIDNIRFH--LGDLYEAA----------------SGYFNTILANPPFVPSPSRDCR-------FRDGGATGEDILARIISESANHLAPHGRLFIVTDLVNLSAYEAKLKRW 1027          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: A0A2E3MT00_9PLAN (Carbamoyltransferase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3MT00_9PLAN)

HSP 1 Score: 147 bits (371), Expect = 2.430e-36
Identity = 90/183 (49.18%), Postives = 110/183 (60.11%), Query Frame = 1
Query:   64 LTEEPVMYIGPDSIGLVQHAPRFRTERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSRRFRAAVGDLYGAEAQGQGFPLPRAADGAPSSSYDLILANPPFVPVPPRLGRAKRRYDGFAYGGASGEEVLSRIFCEAVERLRPGGVLADVTELANPRDFGAKLGRW 612
            LTE+PVMYIG DS GLVQ APR+R+   LDLCCGSG+QGI A+     + RV  VD+NPRAVR ARFNA LNG+++   R   GDL+               +      +D +LANPPFVP P     A+ R   F  GGA+GE+VL RI  EA E L P G +A VT+L N   +G KL  W
Sbjct:  881 LTEQPVMYIGMDSHGLVQAAPRWRSMATLDLCCGSGIQGIVASRY---SRRVVSVDVNPRAVRVARFNAQLNGVENLEIRR--GDLF---------------EPVRGDRFDAVLANPPFVPSP----NAEYR---FRDGGANGEQVLRRIIQEAAEHLTPTGRIAVVTDLVNVDRYGTKLDSW 1036          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: A0A7S1XYP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYP2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.790e-36
Identity = 96/245 (39.18%), Postives = 135/245 (55.10%), Query Frame = 1
Query:  142 RILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNG--LDSRRFRAAVGDLYGAEAQGQGFPLPRAADGAPSSSYDLILANPPFVPVPPRLGRA------------KRRYDGFAYGGASGEEVLSRIFCEAVERLRPGGVLADVTELANPR-----DFGAKLGRWIVAPPRPDGRAVPGACHGCEAVVFHEERLWSAAEYSAKRAGSEKEARGWAGHLD-LVGIEEMAPGFIFV 816
            RILD+CCGSGVQ IAAA L   +A +T VD++PRA+RF+ FNAALNG  ++        G L G  A+         ++ AP   +DL+LANPPFVPVPP                 +RRY GFA GG SGE+VL +I   A +RLRPGGV A V+E    R     D+  ++G  + A   P+  ++        +++  ++       Y+ +R+GSE E   W  HL+  +G+E MA G ++V
Sbjct:   21 RILDVCCGSGVQAIAAARLWNRSADITFVDLSPRALRFSLFNAALNGCTIEGDAAPGGGGALSGVTARA--LLSDALSEVAPDPKFDLLLANPPFVPVPPXXXXXXXXXXXXXXXXLRRRYTGFADGGGSGEDVLIKILSGATQRLRPGGVAAVVSEYFFRRGNWRRDWAQRIGVALAAG-GPEAESM-------RSMLVCDDPPLDLDTYAQRRSGSEAEREIWRRHLEEALGLEAMATGLLYV 255          
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Match: UPI001F15CF9D (methyltransferase n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F15CF9D)

HSP 1 Score: 145 bits (365), Expect = 1.530e-35
Identity = 85/183 (46.45%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   64 LTEEPVMYIGPDSIGLVQHAPRFRTERILDLCCGSGVQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSRRFRAAVGDLYGAEAQGQGFPLPRAADGAPSSSYDLILANPPFVPVPPRLGRAKRRYDGFAYGGASGEEVLSRIFCEAVERLRPGGVLADVTELANPRDFGAKLGRW 612
            L EEPVMY+G DS+GLV  AP+    R+LDLCCGSG+QG+ A+        V  VDINPRA+RFARFNA LNG+++ +F   +G+L+ A                 S  ++ ILANPPFVP P R  +       F  GGASGE++L+RI  E+   L P G L  VT+L N +++ AKL RW
Sbjct:  877 LDEEPVMYLGMDSMGLVHTAPQIPVSRVLDLCCGSGIQGLVASRYAR---EVVGVDINPRAIRFARFNAQLNGINNIQFH--LGNLFEAA----------------SGYFNTILANPPFVPSPNREVK-------FRDGGASGEDILARIISESANHLAPQGHLFIVTDLVNVQEYEAKLERW 1031          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100925.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPW3_9PHAE1.110e-6851.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4KP11_GUITH9.710e-5645.90Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
D8LCV5_ECTSI5.840e-5449.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L1IFL4_GUITC3.450e-5343.16MTS domain-containing protein n=2 Tax=Guillardia t... [more]
A0A7S2SRA9_9STRA1.710e-5141.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C8B5_9STRA1.020e-4544.92S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A8J7YZ50_9CYAN5.240e-3748.63Methyltransferase n=1 Tax=Myxacorys almedinensis A... [more]
A0A2E3MT00_9PLAN2.430e-3649.18Carbamoyltransferase n=1 Tax=Planctomycetaceae bac... [more]
A0A7S1XYP2_9STRA3.790e-3639.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI001F15CF9D1.530e-3546.45methyltransferase n=1 Tax=Leptodesmis sichuanensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100925contigF-distichus_contig100925:851..2077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue1.6e-55
Seed eggNOG ortholog2880.D8LCV5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:Methyltransf_26
EggNOG OGs2S3K6@2759,COG2890@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size819
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100925.75.1prot_F-distichus_contig100925.75.1Fucus distichus monoicouspolypeptideF-distichus_contig100925 872..2077 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.6565707-UTR-F-distichus_contig100925:850..8711622928926.6565707-UTR-F-distichus_contig100925:850..871Fucus distichus monoicousUTRF-distichus_contig100925 851..871 +
1690885067.9485552-UTR-F-distichus_contig100925:850..8711690885067.9485552-UTR-F-distichus_contig100925:850..871Fucus distichus monoicousUTRF-distichus_contig100925 851..871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.6709468-CDS-F-distichus_contig100925:871..9821622928926.6709468-CDS-F-distichus_contig100925:871..982Fucus distichus monoicousCDSF-distichus_contig100925 872..982 +
1690885067.9695494-CDS-F-distichus_contig100925:871..9821690885067.9695494-CDS-F-distichus_contig100925:871..982Fucus distichus monoicousCDSF-distichus_contig100925 872..982 +
1622928926.680948-CDS-F-distichus_contig100925:1072..12701622928926.680948-CDS-F-distichus_contig100925:1072..1270Fucus distichus monoicousCDSF-distichus_contig100925 1073..1270 +
1690885067.979279-CDS-F-distichus_contig100925:1072..12701690885067.979279-CDS-F-distichus_contig100925:1072..1270Fucus distichus monoicousCDSF-distichus_contig100925 1073..1270 +
1622928926.6914072-CDS-F-distichus_contig100925:1456..17621622928926.6914072-CDS-F-distichus_contig100925:1456..1762Fucus distichus monoicousCDSF-distichus_contig100925 1457..1762 +
1690885067.9877226-CDS-F-distichus_contig100925:1456..17621690885067.9877226-CDS-F-distichus_contig100925:1456..1762Fucus distichus monoicousCDSF-distichus_contig100925 1457..1762 +
1622928926.704653-CDS-F-distichus_contig100925:1894..20771622928926.704653-CDS-F-distichus_contig100925:1894..2077Fucus distichus monoicousCDSF-distichus_contig100925 1895..2077 +
1690885068.0658581-CDS-F-distichus_contig100925:1894..20771690885068.0658581-CDS-F-distichus_contig100925:1894..2077Fucus distichus monoicousCDSF-distichus_contig100925 1895..2077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100925.75.1

>prot_F-distichus_contig100925.75.1 ID=prot_F-distichus_contig100925.75.1|Name=mRNA_F-distichus_contig100925.75.1|organism=Fucus distichus monoicous|type=polypeptide|length=266bp
MVFATDWPPPGSTALTEEPVMYIGPDSIGLVQHAPRFRTERILDLCCGSG
VQGIAAAALRGGNARVTCVDINPRAVRFARFNAALNGLDSRRFRAAVGDL
YGAEAQGQGFPLPRAADGAPSSSYDLILANPPFVPVPPRLGRAKRRYDGF
AYGGASGEEVLSRIFCEAVERLRPGGVLADVTELANPRDFGAKLGRWIVA
PPRPDGRAVPGACHGCEAVVFHEERLWSAAEYSAKRAGSEKEARGWAGHL
DLVGIEEMAPGFIFVR
back to top

mRNA from alignment at F-distichus_contig100925:851..2077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100925.75.1 ID=mRNA_F-distichus_contig100925.75.1|Name=mRNA_F-distichus_contig100925.75.1|organism=Fucus distichus monoicous|type=mRNA|length=1227bp|location=Sequence derived from alignment at F-distichus_contig100925:851..2077+ (Fucus distichus monoicous)
GGCATCGTTTCCCCTGTGGATATGGTGTTCGCGACGGATTGGCCGCCCCC GGGCAGCACGGCCTTGACAGAAGAGCCGGTCATGTACATCGGACCGGACA GCATCGGTCTCGTGCAGCACGCTCCTCGCTTCGTGGCACCGTGCCCTCCT ATGACAGGCAGGGATAAAGACAAATTTCGAGAAGCAGGAAGCGGCGGCGG CAGAGGCACGGGAAGGCGGAAGAGGACGGAAAGGATCTTGGACCTCTGCT GCGGGTCGGGAGTTCAGGGAATCGCGGCGGCGGCCCTGCGAGGGGGAAAT GCAAGAGTGACGTGCGTGGACATTAACCCGAGGGCGGTACGATTTGCCCG CTTCAACGCGGCCTTGAACGGCCTCGACAGCCGAAGATTTCGCGCCGCGG TGGGTGACTTGTACGGCGCCGTCAAGTGTGACCCCCATGAAGACGACGGG GAGGATTCCGTGCCATTGGAGAGCGCCTCCGGAGGTCTTCGACCGACATA TTTTCAAGGAACGGACACCTCCGAGCGCCAAAGCGCTGCCGCGGATTCTG GCGGTGCAAGCTTTGGAAGTGAAGAAGGGCGAGGCTGCGACAACGACCCC ACCGAGGAAGCTCAGGGCCAAGGTTTTCCGCTGCCCCGCGCAGCCGATGG CGCCCCCTCGTCATCTTACGACCTCATCCTCGCCAACCCTCCGTTCGTTC CCGTGCCCCCGCGACTCGGGCGCGCCAAGAGACGCTACGACGGGTTCGCC TACGGGGGCGCCAGTGGCGAGGAAGTCCTATCTAGGATCTTCTGCGAGGC GGTAGAGAGGCTTCGCCCCGGCGGCGTCCTCGCGGATGTTACCGAGCTCG CGAATCCTCGGGATTTCGGTGCCAAGCTTGGGCGTTGGATAGTAGCGCCG CCCCGACCGGATGTTACCACTGCTGCTGCCGCCTACTCCTTAGCAAACGA CGGCCACCTCCGAGCAATGGACAAGACCTCCTCTGGCGCTGACGATGCTT CTGGCGCCAATGCATTTCGCGTCTCGGCGAGGGCGGCGCCCGAGGGAAGA GCCGTCCCCGGCGCCTGCCACGGGTGTGAAGCAGTCGTCTTCCACGAAGA GCGGCTATGGTCGGCCGCCGAGTACTCCGCCAAGAGGGCCGGGAGCGAGA AGGAGGCACGGGGCTGGGCGGGGCACCTAGACCTCGTGGGGATAGAGGAA ATGGCCCCCGGGTTCATCTTCGTCCGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig100925:851..2077+

>mRNA_F-distichus_contig100925.75.1 ID=mRNA_F-distichus_contig100925.75.1|Name=mRNA_F-distichus_contig100925.75.1|organism=Fucus distichus monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at F-distichus_contig100925:851..2077+ (Fucus distichus monoicous)
ATGGTGTTCGCGACGGATTGGCCGCCCCCGGGCAGCACGGCCTTGACAGA
AGAGCCGGTCATGTACATCGGACCGGACAGCATCGGTCTCGTGCAGCACG
CTCCTCGCTTCATGGTGTTCGCGACGGATTGGCCGCCCCCGGGCAGCACG
GCCTTGACAGAAGAGCCGGTCATGTACATCGGACCGGACAGCATCGGTCT
CGTGCAGCACGCTCCTCGCTTCAGGACGGAAAGGATCTTGGACCTCTGCT
GCGGGTCGGGAGTTCAGGGAATCGCGGCGGCGGCCCTGCGAGGGGGAAAT
GCAAGAGTGACGTGCGTGGACATTAACCCGAGGGCGGTACGATTTGCCCG
CTTCAACGCGGCCTTGAACGGCCTCGACAGCCGAAGATTTCGCGCCGCGG
TGGGTGACTTGTACGGCGCCAGGACGGAAAGGATCTTGGACCTCTGCTGC
GGGTCGGGAGTTCAGGGAATCGCGGCGGCGGCCCTGCGAGGGGGAAATGC
AAGAGTGACGTGCGTGGACATTAACCCGAGGGCGGTACGATTTGCCCGCT
TCAACGCGGCCTTGAACGGCCTCGACAGCCGAAGATTTCGCGCCGCGGTG
GGTGACTTGTACGGCGCCGAAGCTCAGGGCCAAGGTTTTCCGCTGCCCCG
CGCAGCCGATGGCGCCCCCTCGTCATCTTACGACCTCATCCTCGCCAACC
CTCCGTTCGTTCCCGTGCCCCCGCGACTCGGGCGCGCCAAGAGACGCTAC
GACGGGTTCGCCTACGGGGGCGCCAGTGGCGAGGAAGTCCTATCTAGGAT
CTTCTGCGAGGCGGTAGAGAGGCTTCGCCCCGGCGGCGTCCTCGCGGATG
TTACCGAGCTCGCGAATCCTCGGGATTTCGGTGCCAAGCTTGGGCGTTGG
ATAGTAGCGCCGCCCCGACCGGATGAAGCTCAGGGCCAAGGTTTTCCGCT
GCCCCGCGCAGCCGATGGCGCCCCCTCGTCATCTTACGACCTCATCCTCG
CCAACCCTCCGTTCGTTCCCGTGCCCCCGCGACTCGGGCGCGCCAAGAGA
CGCTACGACGGGTTCGCCTACGGGGGCGCCAGTGGCGAGGAAGTCCTATC
TAGGATCTTCTGCGAGGCGGTAGAGAGGCTTCGCCCCGGCGGCGTCCTCG
CGGATGTTACCGAGCTCGCGAATCCTCGGGATTTCGGTGCCAAGCTTGGG
CGTTGGATAGTAGCGCCGCCCCGACCGGATGGAAGAGCCGTCCCCGGCGC
CTGCCACGGGTGTGAAGCAGTCGTCTTCCACGAAGAGCGGCTATGGTCGG
CCGCCGAGTACTCCGCCAAGAGGGCCGGGAGCGAGAAGGAGGCACGGGGC
TGGGCGGGGCACCTAGACCTCGTGGGGATAGAGGAAATGGCCCCCGGGTT
CATCTTCGTCCGAGGAAGAGCCGTCCCCGGCGCCTGCCACGGGTGTGAAG
CAGTCGTCTTCCACGAAGAGCGGCTATGGTCGGCCGCCGAGTACTCCGCC
AAGAGGGCCGGGAGCGAGAAGGAGGCACGGGGCTGGGCGGGGCACCTAGA
CCTCGTGGGGATAGAGGAAATGGCCCCCGGGTTCATCTTCGTCCGA
back to top