mRNA_F-distichus_contig100922.74.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100922.74.1
Unique NamemRNA_F-distichus_contig100922.74.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100922.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100922contigF-distichus_contig100922:722..1040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.562544-CDS-F-distichus_contig100922:721..10391622928926.562544-CDS-F-distichus_contig100922:721..1039Fucus distichus monoicousCDSF-distichus_contig100922 722..1039 +
1690885067.8448803-CDS-F-distichus_contig100922:721..10391690885067.8448803-CDS-F-distichus_contig100922:721..1039Fucus distichus monoicousCDSF-distichus_contig100922 722..1039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100922.74.1prot_F-distichus_contig100922.74.1Fucus distichus monoicouspolypeptideF-distichus_contig100922 722..1039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100922.74.1

>prot_F-distichus_contig100922.74.1 ID=prot_F-distichus_contig100922.74.1|Name=mRNA_F-distichus_contig100922.74.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
GRRSAVSAAVIAVPTPEPALGERPSRDSRPQSPPSSVTSEGSSASAASPG
RRRRLHRSPLSCIAASLPSLSSTADRDSTGRFLSSRGSGIWPLLLLLPPS
VSPSGP
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mRNA from alignment at F-distichus_contig100922:722..1040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100922.74.1 ID=mRNA_F-distichus_contig100922.74.1|Name=mRNA_F-distichus_contig100922.74.1|organism=Fucus distichus monoicous|type=mRNA|length=319bp|location=Sequence derived from alignment at F-distichus_contig100922:722..1040+ (Fucus distichus monoicous)
GGCCGTCGTTCCGCCGTCTCCGCCGCCGTTATCGCCGTTCCTACCCCTGA
ACCTGCGTTGGGTGAACGCCCGTCGCGTGACTCGAGACCCCAGTCTCCAC
CGTCGTCCGTCACATCCGAAGGATCATCCGCCTCAGCAGCCTCGCCAGGC
CGCCGGCGTCGCCTCCACCGGTCACCCCTCTCCTGCATAGCCGCCTCCTT
GCCTTCACTCTCTTCAACCGCGGATCGCGATTCTACGGGTCGTTTTCTTT
CGAGCCGAGGTTCGGGGATATGGCCTCTGCTGCTGCTTCTGCCGCCGTCG
GTGTCCCCCAGTGGGCCGT
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Coding sequence (CDS) from alignment at F-distichus_contig100922:722..1040+

>mRNA_F-distichus_contig100922.74.1 ID=mRNA_F-distichus_contig100922.74.1|Name=mRNA_F-distichus_contig100922.74.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig100922:722..1040+ (Fucus distichus monoicous)
GGCCGTCGTTCCGCCGTCTCCGCCGCCGTTATCGCCGTTCCTACCCCTGA
ACCTGCGTTGGGTGAACGCCCGTCGCGTGACTCGAGACCCCAGTCTCCAC
CGTCGTCCGTCACATCCGAAGGATCATCCGCCTCAGCAGCCTCGCCAGGC
CGCCGGCGTCGCCTCCACCGGTCACCCCTCTCCTGCATAGCCGCCTCCTT
GCCTTCACTCTCTTCAACCGCGGATCGCGATTCTACGGGTCGTTTTCTTT
CGAGCCGAGGTTCGGGGATATGGCCTCTGCTGCTGCTTCTGCCGCCGTCG
GTGTCCCCCAGTGGGCCGGGCCGTCGTTCCGCCGTCTCCGCCGCCGTTAT
CGCCGTTCCTACCCCTGAACCTGCGTTGGGTGAACGCCCGTCGCGTGACT
CGAGACCCCAGTCTCCACCGTCGTCCGTCACATCCGAAGGATCATCCGCC
TCAGCAGCCTCGCCAGGCCGCCGGCGTCGCCTCCACCGGTCACCCCTCTC
CTGCATAGCCGCCTCCTTGCCTTCACTCTCTTCAACCGCGGATCGCGATT
CTACGGGTCGTTTTCTTTCGAGCCGAGGTTCGGGGATATGGCCTCTGCTG
CTGCTTCTGCCGCCGTCGGTGTCCCCCAGTGGGCCG
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