mRNA_F-distichus_contig100922.73.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100922.73.1
Unique NamemRNA_F-distichus_contig100922.73.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100922.73.1 vs. uniprot
Match: D7G5G7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5G7_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.450e-17
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 FPKVVRDRTKRAAMKGHECQECAAYVAAVGGSPGEREALLNMCSR 135
            F +VVRDR+KRA MKGH+C+ CAAY+AAVGGSPGEREA+LNMCSR
Sbjct:  834 FQEVVRDRSKRAMMKGHDCEHCAAYLAAVGGSPGEREAILNMCSR 878
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100922.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5G7_ECTSI4.450e-1780.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100922contigF-distichus_contig100922:302..436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000540.1
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.617218-CDS-F-distichus_contig100922:301..4361622928926.617218-CDS-F-distichus_contig100922:301..436Fucus distichus monoicousCDSF-distichus_contig100922 302..436 -
1690885067.8615077-CDS-F-distichus_contig100922:301..4361690885067.8615077-CDS-F-distichus_contig100922:301..436Fucus distichus monoicousCDSF-distichus_contig100922 302..436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100922.73.1prot_F-distichus_contig100922.73.1Fucus distichus monoicouspolypeptideF-distichus_contig100922 302..436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100922.73.1

>prot_F-distichus_contig100922.73.1 ID=prot_F-distichus_contig100922.73.1|Name=mRNA_F-distichus_contig100922.73.1|organism=Fucus distichus monoicous|type=polypeptide|length=45bp
FPKVVRDRTKRAAMKGHECQECAAYVAAVGGSPGEREALLNMCSR
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mRNA from alignment at F-distichus_contig100922:302..436-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100922.73.1 ID=mRNA_F-distichus_contig100922.73.1|Name=mRNA_F-distichus_contig100922.73.1|organism=Fucus distichus monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at F-distichus_contig100922:302..436- (Fucus distichus monoicous)
TTTCCAAAGGTTGTGAGAGACCGGACCAAGAGGGCAGCGATGAAGGGGCA
CGAGTGCCAGGAGTGTGCGGCTTACGTCGCCGCCGTAGGCGGCTCTCCCG
GAGAGCGGGAAGCTTTGCTCAACATGTGCTCACGG
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Coding sequence (CDS) from alignment at F-distichus_contig100922:302..436-

>mRNA_F-distichus_contig100922.73.1 ID=mRNA_F-distichus_contig100922.73.1|Name=mRNA_F-distichus_contig100922.73.1|organism=Fucus distichus monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at F-distichus_contig100922:302..436- (Fucus distichus monoicous)
TTTCCAAAGGTTGTGAGAGACCGGACCAAGAGGGCAGCGATGAAGGGGCA
CGAGTGCCAGGAGTGTGCGGCTTACGTCGCCGCCGTAGGCGGCTCTCCCG
GAGAGCGGGAAGCTTTGCTCAACATGTGCTCACGGTTTCCAAAGGTTGTG
AGAGACCGGACCAAGAGGGCAGCGATGAAGGGGCACGAGTGCCAGGAGTG
TGCGGCTTACGTCGCCGCCGTAGGCGGCTCTCCCGGAGAGCGGGAAGCTT
TGCTCAACATGTGCTCACGG
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