mRNA_F-distichus_contig100919.72.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100919.72.1
Unique NamemRNA_F-distichus_contig100919.72.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig100919.72.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.510e-18
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    4 VKLACSLALLAIGLNNAASSLTTRQRVGLVEALHDHLKGK-AAAPVSLGAVPDSQEK-GGVCADRDGVFLKAALQYLSSVEVAAEVEKDE 267
            VKL CSLA+L +GL++AAS L   +RVGLVE LH HLKGK  +A V+LG   + +   GGVCAD +GVFLK AL YLSS +VA+ V K+E
Sbjct: 1634 VKLTCSLAVLVVGLSDAASWLDAPRRVGLVETLHAHLKGKPGSAAVTLGGALEGRAGYGGVCADGEGVFLKTALLYLSSQQVASAVRKEE 1723
[Close]
BLAST of mRNA_F-distichus_contig100919.72.1 vs. uniprot
Match: A0A6H5KF24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF24_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.990e-16
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:   22 LALLAIGLNNAASSLTTRQRVGLVEALHDHLKGK-AAAPVSLGAVPDSQEK-GGVCADRDGVFLKAALQYLSSVEVAAEVEKDE 267
            +A+L +GL++AASSL TR+RVGLVE LH HLKGK  +A V+LG   + +   GGVCAD +GVFLK AL YLSS +VA+ V +++
Sbjct:    1 MAVLVVGLSDAASSLDTRRRVGLVETLHAHLKGKPGSAAVTLGGALEGRAGYGGVCADGEGVFLKTALLYLSSQQVASAVREED 84
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100919.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA3_ECTSI3.510e-1858.89PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KF24_9PHAE1.990e-1657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100919contigF-distichus_contig100919:76..887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size287
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100919.72.1prot_F-distichus_contig100919.72.1Fucus distichus monoicouspolypeptideF-distichus_contig100919 76..886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.4831061-CDS-F-distichus_contig100919:75..1561622928926.4831061-CDS-F-distichus_contig100919:75..156Fucus distichus monoicousCDSF-distichus_contig100919 76..156 +
1690885067.6235368-CDS-F-distichus_contig100919:75..1561690885067.6235368-CDS-F-distichus_contig100919:75..156Fucus distichus monoicousCDSF-distichus_contig100919 76..156 +
1622928926.495727-CDS-F-distichus_contig100919:423..5821622928926.495727-CDS-F-distichus_contig100919:423..582Fucus distichus monoicousCDSF-distichus_contig100919 424..582 +
1690885067.7408912-CDS-F-distichus_contig100919:423..5821690885067.7408912-CDS-F-distichus_contig100919:423..582Fucus distichus monoicousCDSF-distichus_contig100919 424..582 +
1622928926.5099554-CDS-F-distichus_contig100919:841..8861622928926.5099554-CDS-F-distichus_contig100919:841..886Fucus distichus monoicousCDSF-distichus_contig100919 842..886 +
1690885067.7529001-CDS-F-distichus_contig100919:841..8861690885067.7529001-CDS-F-distichus_contig100919:841..886Fucus distichus monoicousCDSF-distichus_contig100919 842..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100919.72.1

>prot_F-distichus_contig100919.72.1 ID=prot_F-distichus_contig100919.72.1|Name=mRNA_F-distichus_contig100919.72.1|organism=Fucus distichus monoicous|type=polypeptide|length=95bp
SVKLACSLALLAIGLNNAASSLTTRQRVGLVEALHDHLKGKAAAPVSLGA
VPDSQEKGGVCADRDGVFLKAALQYLSSVEVAAEVEKDEAAAASD
back to top

mRNA from alignment at F-distichus_contig100919:76..887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100919.72.1 ID=mRNA_F-distichus_contig100919.72.1|Name=mRNA_F-distichus_contig100919.72.1|organism=Fucus distichus monoicous|type=mRNA|length=812bp|location=Sequence derived from alignment at F-distichus_contig100919:76..887+ (Fucus distichus monoicous)
AGCGTCAAGCTGGCGTGTTCATTGGCCCTGCTGGCGATCGGGCTAAATAA
CGCGGCCTCGTCGTTGACCACGAGGCAACGGGTGAGCGTACAAAAGACAG
CTATTCATAGCTACAGTAACTGTTGAATTCTTGGTTGGCCTGCAGGGCGT
CAACGGACACGAGCGAGCGTTTCTAGCAAACGCGGCTTCATGTTTATGCG
AGTATTCTTTCGTGATCGCAAATTGGCGAGTTTGGGCTCTCCTGGCTCTA
GGCTGGTTTCCCGATCGAGGAGGTAACGGTCCGGAAATCCGATGTTCCCT
CAAATACTCAAGCCTCTTTTGTTGACTTGCGCGCCGTTTCCCTCGCAGGT
GGGCCTTGTAGAAGCGCTGCACGACCACCTCAAGGGGAAGGCGGCCGCTC
CCGTTAGCCTGGGCGCGGTCCCCGACAGCCAGGAGAAAGGCGGGGTTTGC
GCCGACAGAGACGGCGTGTTCCTCAAGGCCGCCCTTCAGTACCTCTCTAG
CGTGGAGGTGTGGATGCATTGGTTGTCATCATAGTGCTGTTATTGGCACG
ATTGTCGCAAGGGACTATCTTTGCTTGCTAAACTTTCTCGCCCCCCCCCC
GCACTTCCGCACCGTGGTTTTACGATCATCCACATCTTCTCTCCGTGGGT
TTGCAATGACAGCATTCGTTTCCTCCCCACCACCCCTACCCTTAAAAGCT
CGGTTCAAATTGCTCGCTCTTCTGGTTTGAAACCGCTCGAACCGCCCCCC
GCCGTGATGCTCGAAGGTCGCGGCCGAGGTCGAGAAAGACGAAGCCGCCG
CGGCTAGTGACG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig100919:76..887+

>mRNA_F-distichus_contig100919.72.1 ID=mRNA_F-distichus_contig100919.72.1|Name=mRNA_F-distichus_contig100919.72.1|organism=Fucus distichus monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at F-distichus_contig100919:76..887+ (Fucus distichus monoicous)
AGCGTCAAGCTGGCGTGTTCATTGGCCCTGCTGGCGATCGGGCTAAATAA
CGCGGCCTCGTCGTTGACCACGAGGCAACGGAGCGTCAAGCTGGCGTGTT
CATTGGCCCTGCTGGCGATCGGGCTAAATAACGCGGCCTCGTCGTTGACC
ACGAGGCAACGGGTGGGCCTTGTAGAAGCGCTGCACGACCACCTCAAGGG
GAAGGCGGCCGCTCCCGTTAGCCTGGGCGCGGTCCCCGACAGCCAGGAGA
AAGGCGGGGTTTGCGCCGACAGAGACGGCGTGTTCCTCAAGGCCGCCCTT
CAGTACCTCTCTAGCGTGGAGGTGGGCCTTGTAGAAGCGCTGCACGACCA
CCTCAAGGGGAAGGCGGCCGCTCCCGTTAGCCTGGGCGCGGTCCCCGACA
GCCAGGAGAAAGGCGGGGTTTGCGCCGACAGAGACGGCGTGTTCCTCAAG
GCCGCCCTTCAGTACCTCTCTAGCGTGGAGGTCGCGGCCGAGGTCGAGAA
AGACGAAGCCGCCGCGGCTAGTGACGTCGCGGCCGAGGTCGAGAAAGACG
AAGCCGCCGCGGCTAGTGAC
back to top