mRNA_F-distichus_contig10090.70.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10090.70.1
Unique NamemRNA_F-distichus_contig10090.70.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: D7G6C8_ECTSI (L51_S25_CI-B8 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6C8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.420e-13
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATY 132
            REFF+ NYAELK  NP FPILLREGTGA+PYLLATY
Sbjct:   29 REFFRTNYAELKALNPGFPILLREGTGADPYLLATY 64
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: UPI001C35FD70 (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35FD70)

HSP 1 Score: 50.4 bits (119), Expect = 5.410e-7
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATYGE 138
            REF KNNY  +K +NP FPIL+RE +G  P + A YG+
Sbjct:   27 REFIKNNYVNIKKENPNFPILIRECSGVQPRVWARYGK 64
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: A0A0L7K267_9NEOP (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7K267_9NEOP)

HSP 1 Score: 50.1 bits (118), Expect = 1.240e-6
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATYG 135
            REF KNNY  +K +NP+FPIL+RE +G  P + A YG
Sbjct:   27 REFIKNNYVNIKKENPSFPILIRECSGVMPCVWARYG 63
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: UPI001F5C0CFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like n=4 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C0CFA)

HSP 1 Score: 48.5 bits (114), Expect = 6.630e-6
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATY 132
            REF K NY ++KT NPA PIL+RE +G  P L A Y
Sbjct:   29 REFVKKNYGDIKTHNPALPILIRECSGVQPQLWARY 64
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: UPI00118232FE (Uncharacterized protein n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI00118232FE)

HSP 1 Score: 47.8 bits (112), Expect = 1.100e-5
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATYGE 138
            REF KNNY  +K +NP FPIL+RE +G  P + A Y +
Sbjct:   27 REFIKNNYVNIKKENPNFPILIRECSGVQPRVWARYDK 64
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: A0A0L7LL10_9NEOP (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LL10_9NEOP)

HSP 1 Score: 47.8 bits (112), Expect = 1.270e-5
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATY 132
            REF KNNY  +K +NP+FPIL+RE +G  P + A Y
Sbjct:   27 REFIKNNYVNIKKENPSFPILIRECSGVMPCVWARY 62
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: UPI001182AD94 (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001182AD94)

HSP 1 Score: 47.4 bits (111), Expect = 1.560e-5
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATY 132
            REF KNNY  +K +NP FPIL+RE +G  P + A Y
Sbjct:   27 REFIKNNYVNIKKENPNFPILIRECSGVQPRVWARY 62
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BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: Q2F672_BOMMO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 n=3 Tax=cellular organisms TaxID=131567 RepID=Q2F672_BOMMO)

HSP 1 Score: 47.0 bits (110), Expect = 2.200e-5
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATY 132
            REF KNNY  +K +NP FPIL+RE +G  P + A Y
Sbjct:   27 REFIKNNYVNIKKENPNFPILIRECSGIQPRVWARY 62
[Close]
BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: UPI000B3CAEA9 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 isoform X1 n=1 Tax=Bombyx mori TaxID=7091 RepID=UPI000B3CAEA9)

HSP 1 Score: 47.0 bits (110), Expect = 2.200e-5
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:   25 REFFKNNYAELKTQNPAFPILLREGTGANPYLLATY 132
            REF KNNY  +K +NP FPIL+RE +G  P + A Y
Sbjct:   27 REFIKNNYVNIKKENPNFPILIRECSGIQPRVWARY 62
[Close]
BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Match: A0A0D2RUK2_GOSRA (L51_S25_CI-B8 domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2RUK2_GOSRA)

HSP 1 Score: 46.2 bits (108), Expect = 3.490e-5
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 1 
Query:   16 ALCREFFKNNYAELKTQNPAFPILLREGTGANPYLLATYG 135
            A  R F + NY +LKT NP FPIL+RE  G  P + A YG
Sbjct:   26 ASARSFVEQNYKDLKTLNPKFPILIRECRGIEPQIWARYG 65
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10090.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G6C8_ECTSI5.420e-1383.33L51_S25_CI-B8 domain-containing protein n=2 Tax=Ec... [more]
UPI001C35FD705.410e-755.26Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A0L7K267_9NEOP1.240e-656.76NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI001F5C0CFA6.630e-658.33NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI00118232FE1.100e-552.63Uncharacterized protein n=2 Tax=Manduca sexta TaxI... [more]
A0A0L7LL10_9NEOP1.270e-555.56NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI001182AD941.560e-555.56Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
Q2F672_BOMMO2.200e-555.56NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI000B3CAEA92.200e-555.56NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A0D2RUK2_GOSRA3.490e-552.50L51_S25_CI-B8 domain-containing protein n=1 Tax=Go... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10090contigF-distichus_contig10090:78..239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.1e-09
Seed eggNOG ortholog2880.D7G6C8
Preferred nameNDUFA2
KEGG koko:K03946
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG3446@1,KOG3446@2759
Ec32 ortholog descriptionNADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2
Ec32 orthologEc-10_001380.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size162
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.3525412-CDS-F-distichus_contig10090:77..2391622928926.3525412-CDS-F-distichus_contig10090:77..239Fucus distichus monoicousCDSF-distichus_contig10090 78..239 +
1690885067.4062128-CDS-F-distichus_contig10090:77..2391690885067.4062128-CDS-F-distichus_contig10090:77..239Fucus distichus monoicousCDSF-distichus_contig10090 78..239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10090.70.1prot_F-distichus_contig10090.70.1Fucus distichus monoicouspolypeptideF-distichus_contig10090 78..239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10090.70.1

>prot_F-distichus_contig10090.70.1 ID=prot_F-distichus_contig10090.70.1|Name=mRNA_F-distichus_contig10090.70.1|organism=Fucus distichus monoicous|type=polypeptide|length=54bp
MCSRFALCREFFKNNYAELKTQNPAFPILLREGTGANPYLLATYGEPSAN
MYM*
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mRNA from alignment at F-distichus_contig10090:78..239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10090.70.1 ID=mRNA_F-distichus_contig10090.70.1|Name=mRNA_F-distichus_contig10090.70.1|organism=Fucus distichus monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at F-distichus_contig10090:78..239+ (Fucus distichus monoicous)
ATGTGCTCTCGTTTTGCGCTTTGCAGGGAATTCTTCAAAAACAATTATGC
GGAGCTCAAGACTCAGAACCCAGCTTTCCCTATCTTGCTTCGTGAAGGGA
CCGGGGCCAATCCATACCTTCTCGCAACCTACGGTGAGCCTTCTGCAAAT
ATGTATATGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig10090:78..239+

>mRNA_F-distichus_contig10090.70.1 ID=mRNA_F-distichus_contig10090.70.1|Name=mRNA_F-distichus_contig10090.70.1|organism=Fucus distichus monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at F-distichus_contig10090:78..239+ (Fucus distichus monoicous)
ATGTGCTCTCGTTTTGCGCTTTGCAGGGAATTCTTCAAAAACAATTATGC
GGAGCTCAAGACTCAGAACCCAGCTTTCCCTATCTTGCTTCGTGAAGGGA
CCGGGGCCAATCCATACCTTCTCGCAACCTACGGTGAGCCTTCTGCAAAT
ATGTATATGTAGATGTGCTCTCGTTTTGCGCTTTGCAGGGAATTCTTCAA
AAACAATTATGCGGAGCTCAAGACTCAGAACCCAGCTTTCCCTATCTTGC
TTCGTGAAGGGACCGGGGCCAATCCATACCTTCTCGCAACCTACGGTGAG
CCTTCTGCAAATATGTATATGTAG
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