mRNA_F-distichus_contig100881.69.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100881.69.1
Unique NamemRNA_F-distichus_contig100881.69.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A6H5KD73_9PHAE (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD73_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 9.480e-15
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGYKV 141
            RRKGLAKR+V++CE   +EWG+DEVLLLVEENN+ A+RLY KLGYK+
Sbjct:  223 RRKGLAKRLVKQCEDVCREWGYDEVLLLVEENNKRARRLYSKLGYKM 269
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A7S2SFZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFZ7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.790e-10
Identity = 25/47 (53.19%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGYKV 141
            RR+G+A+R+ R  EA AK+WG++ + LLV+E N  A+RLY+KLGY++
Sbjct:   68 RRRGIAQRLAREAEAYAKKWGYERITLLVDEKNDRAQRLYEKLGYQI 114
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A836CB41_9STRA (Acyl-CoA N-acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB41_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.960e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGYK 138
            RRKG+ +++VR CEA  K WG+ E+LLLV E N  A+RLY KLGYK
Sbjct:  194 RRKGIGQKLVRACEAKVKSWGYAELLLLVNETNSPARRLYSKLGYK 239
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A7S3CH37_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CH37_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 5.930e-10
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGYKVGRKD 153
            RR+G+AK+++ RCE    EWG+ E+ LLVE++N  A+RLY+KLGYK  R++
Sbjct:  190 RRRGIAKKLMSRCERVCAEWGYQEIWLLVEKDNPKARRLYRKLGYKERREE 240
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A7S0JEC8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JEC8_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGY 135
            RR+G+A+R+VR CEA A+ WG+DE+L+ VE  N GA+RLY   GY
Sbjct:  159 RRQGIARRLVRTCEATARRWGYDELLIKVERGNSGAERLYAACGY 203
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A8J6CCI5_DIALT (N-acetyltransferase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCI5_DIALT)

HSP 1 Score: 56.2 bits (134), Expect = 3.770e-8
Identity = 23/47 (48.94%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGYKV 141
            RR+G+A+++VR+CE   + WGFD++ L VE  N  A++LY+KLGY+ 
Sbjct:  116 RRRGIARKLVRKCEDEVRAWGFDKLYLKVEAPNSPARKLYEKLGYRT 162
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: R1ERM8_EMIHU (N-acetyltransferase domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ERM8_EMIHU)

HSP 1 Score: 55.5 bits (132), Expect = 9.910e-8
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGY 135
            RRK +  R+V R EA A EWGFDE+LLLV E N+ A+ LY +LGY
Sbjct:  158 RRKRIGSRLVARAEALAAEWGFDELLLLVGEENRPARALYAELGY 202
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A7S2V3S6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3S6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.960e-7
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGY 135
            RR+G+ + +VR CE+  +EWG+ E++L VEE N+ A+  YQ LG+
Sbjct:   22 RRRGVGRALVRSCESRVQEWGYSEIVLQVEEENEAARLFYQNLGF 66
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: A0A7S4JM75_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JM75_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 3.750e-7
Identity = 22/51 (43.14%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGYKVGRKD 153
            RR+G+  R++R  EA+A  WGFDE++L+V+ +N+ A+  Y   GY+V  +D
Sbjct:   12 RRRGIGTRLLREVEASASSWGFDEMILMVDVDNESARDFYDGAGYRVVAED 62
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BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Match: L1IB27_GUITC (N-acetyltransferase domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IB27_GUITC)

HSP 1 Score: 50.4 bits (119), Expect = 4.550e-7
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 RRKGLAKRMVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGY 135
            R KG+ K ++R CEA     GF E+LL V+  N+GA RLY++LGY
Sbjct:   13 RGKGVGKELIRECEAEVVRMGFTELLLKVDHTNEGAYRLYRRLGY 57
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100881.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD73_9PHAE9.480e-1572.34N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7S2SFZ7_9STRA3.790e-1053.19Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CB41_9STRA4.960e-1060.87Acyl-CoA N-acyltransferase n=1 Tax=Tribonema minus... [more]
A0A7S3CH37_9CHLO5.930e-1052.94Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A7S0JEC8_9EUKA1.270e-957.78Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A8J6CCI5_DIALT3.770e-848.94N-acetyltransferase domain-containing protein n=1 ... [more]
R1ERM8_EMIHU9.910e-860.00N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7S2V3S6_9STRA1.960e-746.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4JM75_9EUKA3.750e-743.14Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
L1IB27_GUITC4.550e-751.11N-acetyltransferase domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100881contigF-distichus_contig100881:203..1261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100881.69.1prot_F-distichus_contig100881.69.1Fucus distichus monoicouspolypeptideF-distichus_contig100881 203..1237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.2690985-CDS-F-distichus_contig100881:202..3041622928926.2690985-CDS-F-distichus_contig100881:202..304Fucus distichus monoicousCDSF-distichus_contig100881 203..304 -
1690885067.3696728-CDS-F-distichus_contig100881:202..3041690885067.3696728-CDS-F-distichus_contig100881:202..304Fucus distichus monoicousCDSF-distichus_contig100881 203..304 -
1622928926.2859159-CDS-F-distichus_contig100881:1207..12371622928926.2859159-CDS-F-distichus_contig100881:1207..1237Fucus distichus monoicousCDSF-distichus_contig100881 1208..1237 -
1690885067.3793063-CDS-F-distichus_contig100881:1207..12371690885067.3793063-CDS-F-distichus_contig100881:1207..1237Fucus distichus monoicousCDSF-distichus_contig100881 1208..1237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.3030334-UTR-F-distichus_contig100881:1237..12611622928926.3030334-UTR-F-distichus_contig100881:1237..1261Fucus distichus monoicousUTRF-distichus_contig100881 1238..1261 -
1690885067.388487-UTR-F-distichus_contig100881:1237..12611690885067.388487-UTR-F-distichus_contig100881:1237..1261Fucus distichus monoicousUTRF-distichus_contig100881 1238..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100881.69.1

>prot_F-distichus_contig100881.69.1 ID=prot_F-distichus_contig100881.69.1|Name=mRNA_F-distichus_contig100881.69.1|organism=Fucus distichus monoicous|type=polypeptide|length=44bp
MVRRCEAAAKEWGFDEVLLLVEENNQGAKRLYQKLGYKVGRKD*
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mRNA from alignment at F-distichus_contig100881:203..1261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100881.69.1 ID=mRNA_F-distichus_contig100881.69.1|Name=mRNA_F-distichus_contig100881.69.1|organism=Fucus distichus monoicous|type=mRNA|length=1059bp|location=Sequence derived from alignment at F-distichus_contig100881:203..1261- (Fucus distichus monoicous)
AGGAGGAAAGGGTTGGCGAAACGCATGGTTAGGCGATGCGAGGCAGCCGC
GAAGGTGACTTGGTTGGCGCCGGTTTTCGCCGTTGATGCTGTATCAACTC
GTACGGCCCACACGCTTTCAACACGACGGTGTTTACGGTTGTACACACAT
CATCACTACACCTGTTACCTTTTCTTTTTTGTTTCTTTTTCTCTTTTTTC
TAAAAGAGTAAAACGCGACTTGCTCGATAGAATTGCATTTCGATTCCTTG
GTGAGATATCAAGTTTTGCGGGCTCCTTCTCTTCTACGTGTAGCAAAGCT
CAGGAAGTGTTTTGCCTCGTACGCTTCAGTAGAACCACATGGCGGTCGTT
CAAAGCCTGGCTGGCGGCTTCCTTCGTCCCTAGTGATAGCACCACAGCAT
CACAATAGCCACTGCTGTCTGCACTGGCGGGAACATTTTGTTGAGGGGCG
CCTCGGTGGCAGCGACATCGATTTCCCCCCCCCCCCTTTTTTTCCCCCTC
CTTAGATCTAACCCCCACTTTCCTACTAATCGCGGAAAACCGTCGCATGT
CGGCTGTATGCTACGGAGTATATGTTTTCGCAGGAGGAATAACGTGTAGG
TTGAAGGGTTTCCTCTTCTCAGGGCGTTATGCCGGAGGGGAGACCCTTCT
GCGAACGTATGCGCCTTCCGCTTTGCTCAATTCACCGGCTGGTGCAATAT
TTTACAGCCCTAAGGGAATGTCACAAGAATTCATCACCCAATAAAAAAGG
CCCCTTCCGGGGACATGTTTAGCACGTCCCCGAATGGAAATGAAATATGT
CTGGTAGGTCTTCATCATAGCCCACGAGGAAAGGGTGTGGTTTGTCTCTT
TCCGAGGAGGCTCTGCTTATGATACAGTAGTGTTCTGCTCCCTGAAAACG
CAGGGACGAATTTGCGACACCCCCTCCCCTCTTTTTTCGACGGCATTTTT
TACTTAGGAATGGGGCTTCGACGAAGTGCTGCTGCTTGTGGAAGAAAACA
ACCAGGGAGCAAAGAGGCTTTACCAGAAACTAGGGTACAAGGTAGGGCGG
AAGGATTGA
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Coding sequence (CDS) from alignment at F-distichus_contig100881:203..1261-

>mRNA_F-distichus_contig100881.69.1 ID=mRNA_F-distichus_contig100881.69.1|Name=mRNA_F-distichus_contig100881.69.1|organism=Fucus distichus monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at F-distichus_contig100881:203..1261- (Fucus distichus monoicous)
ATGGTTAGGCGATGCGAGGCAGCCGCGAAGATGGTTAGGCGATGCGAGGC
AGCCGCGAAGGAATGGGGCTTCGACGAAGTGCTGCTGCTTGTGGAAGAAA
ACAACCAGGGAGCAAAGAGGCTTTACCAGAAACTAGGGTACAAGGTAGGG
CGGAAGGATTGAGAATGGGGCTTCGACGAAGTGCTGCTGCTTGTGGAAGA
AAACAACCAGGGAGCAAAGAGGCTTTACCAGAAACTAGGGTACAAGGTAG
GGCGGAAGGATTGA
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