mRNA_F-distichus_contig100846.68.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100846.68.1
Unique NamemRNA_F-distichus_contig100846.68.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: D8LGP5_ECTSI (Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.240e-21
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    4 QVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSG 159
            +VCRGS+LGW VEWLQAFFLVADDVMD+SLTRRGQPCWYKV ++  +  N  
Sbjct:  227 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDS 278
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: A0A6H5L554_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.630e-20
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    4 QVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCR 132
            +VCRGS+LGW VEWLQAFFLVADDVMD+SLTRRGQPCWYKV R
Sbjct:  237 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVGR 279
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: Q20CB4_VITVI (Farnesyl diphosphate synthase (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=Q20CB4_VITVI)

HSP 1 Score: 80.1 bits (196), Expect = 1.730e-17
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 QVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSGI 162
            +VC   VLGW +EWLQA+FLV DD+MD S TRRGQPCW++V ++  +  N G+
Sbjct:    7 EVCLACVLGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDGV 59
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: A0A7R9VDU2_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VDU2_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 2.860e-17
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    7 VCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSGI 162
            + + +VLGW +EWLQAFFLVADD+MD S+TRRGQPCWYK  ++  +  N GI
Sbjct:   80 IFKANVLGWCIEWLQAFFLVADDIMDGSITRRGQPCWYKQSKVGLLAVNDGI 131
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: A0A7S3F4E0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F4E0_9VIRI)

HSP 1 Score: 82.4 bits (202), Expect = 3.010e-17
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 SQVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSGI 162
            SQ+ R  VLGW +EWLQAFFLVADD+MD S+TRRGQPCWYKV ++     N  I
Sbjct:   81 SQLRRACVLGWCIEWLQAFFLVADDIMDASITRRGQPCWYKVPKVELKACNDCI 134
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: A0A022R2J6_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R2J6_ERYGU)

HSP 1 Score: 79.0 bits (193), Expect = 4.860e-17
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 QVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSGI 162
            +V   S LGW +EWLQA+FLV DD+MD S TRRGQPCWY+V ++  +  N GI
Sbjct:   78 EVFLASALGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWYRVPKVGMIAVNDGI 130
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: A0A8B6GS04_MYTGA (Farnesyl diphosphate synthase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GS04_MYTGA)

HSP 1 Score: 80.5 bits (197), Expect = 7.010e-17
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   22 VLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSGIY 165
            +LGW +EWLQAFFLVADD+MDKS+TRRG+PCWYK   +  +  N  IY
Sbjct:   70 ILGWCIEWLQAFFLVADDIMDKSITRRGKPCWYKQNNVGLIAVNDAIY 117
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: UPI0008787487 (farnesyl pyrophosphate synthase-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0008787487)

HSP 1 Score: 79.3 bits (194), Expect = 7.090e-17
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 QVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSGI 162
            ++ + S LGW +EWLQA+FLV DD+MD S TRRGQPCWYK+ ++  +  N GI
Sbjct:   34 EIFQASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYKLPKVGMIAVNDGI 86
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: A0A835Z5G4_9STRA (Farnesyl pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.190e-17
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   10 CRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSG 159
            CR +VLGW +EWLQAFFLVADDVMD S TRRGQPCWY+V  +  +  N  
Sbjct:  235 CRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWYRVPHVKQIAINDA 284
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BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Match: UPI00145878CE (farnesyl pyrophosphate synthase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145878CE)

HSP 1 Score: 80.9 bits (198), Expect = 1.160e-16
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 SQVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVFNSGIY 165
            S++ +  +LGW +EWLQAFFLVADDVMDKS+TRRG+PCWYK   +  V  N   Y
Sbjct:   91 SELRQARILGWCIEWLQAFFLVADDVMDKSITRRGKPCWYKKKDVGLVAVNDAFY 145
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100846.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP5_ECTSI5.240e-2173.08Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5L554_9PHAE3.630e-2088.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q20CB4_VITVI1.730e-1756.60Farnesyl diphosphate synthase (Fragment) n=1 Tax=V... [more]
A0A7R9VDU2_9CHLO2.860e-1761.54Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S3F4E0_9VIRI3.010e-1764.81Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A022R2J6_ERYGU4.860e-1758.49Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A8B6GS04_MYTGA7.010e-1764.58Farnesyl diphosphate synthase n=1 Tax=Mytilus gall... [more]
UPI00087874877.090e-1756.60farnesyl pyrophosphate synthase-like n=1 Tax=Nicot... [more]
A0A835Z5G4_9STRA9.190e-1766.00Farnesyl pyrophosphate synthase n=1 Tax=Tribonema ... [more]
UPI00145878CE1.160e-1660.00farnesyl pyrophosphate synthase-like n=1 Tax=Pecte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100846contigF-distichus_contig100846:1710..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D8LGP5
Preferred nameFDPS
KEGG rclassRC00279,RC00382
KEGG koko:K00787,ko:K05396,ko:K06220
KEGG ReactionR01658,R01874,R02003
KEGG Pathwayko00270,ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00270,map00900,map01100,map01110,map01130,map05164,map05166
KEGG ModuleM00366,M00367
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0016114,GO:0016125,GO:0016126,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.dimethylallyltranstransferase activity
EggNOG OGsCOG0142@1,KOG0711@2759
Ec32 ortholog descriptionFarnesyl pyrophosphate synthase
Ec32 orthologEc-10_003020.1
EC2.5.1.1,2.5.1.10,4.4.1.15
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.213018-CDS-F-distichus_contig100846:1709..18741622928926.213018-CDS-F-distichus_contig100846:1709..1874Fucus distichus monoicousCDSF-distichus_contig100846 1710..1874 +
1690885067.3553455-CDS-F-distichus_contig100846:1709..18741690885067.3553455-CDS-F-distichus_contig100846:1709..1874Fucus distichus monoicousCDSF-distichus_contig100846 1710..1874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100846.68.1prot_F-distichus_contig100846.68.1Fucus distichus monoicouspolypeptideF-distichus_contig100846 1710..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100846.68.1

>prot_F-distichus_contig100846.68.1 ID=prot_F-distichus_contig100846.68.1|Name=mRNA_F-distichus_contig100846.68.1|organism=Fucus distichus monoicous|type=polypeptide|length=55bp
SQVCRGSVLGWAVEWLQAFFLVADDVMDKSLTRRGQPCWYKVCRLYFVVF
NSGIY
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mRNA from alignment at F-distichus_contig100846:1710..1874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100846.68.1 ID=mRNA_F-distichus_contig100846.68.1|Name=mRNA_F-distichus_contig100846.68.1|organism=Fucus distichus monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at F-distichus_contig100846:1710..1874+ (Fucus distichus monoicous)
TCGCAGGTTTGTCGCGGCAGCGTGCTTGGCTGGGCGGTCGAATGGCTACA
GGCATTCTTCCTCGTGGCCGATGACGTTATGGACAAGAGCCTCACCCGCC
GTGGGCAGCCCTGCTGGTACAAGGTATGTCGTTTGTATTTCGTAGTATTT
AATAGCGGCATATAT
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Coding sequence (CDS) from alignment at F-distichus_contig100846:1710..1874+

>mRNA_F-distichus_contig100846.68.1 ID=mRNA_F-distichus_contig100846.68.1|Name=mRNA_F-distichus_contig100846.68.1|organism=Fucus distichus monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at F-distichus_contig100846:1710..1874+ (Fucus distichus monoicous)
TCGCAGGTTTGTCGCGGCAGCGTGCTTGGCTGGGCGGTCGAATGGCTACA
GGCATTCTTCCTCGTGGCCGATGACGTTATGGACAAGAGCCTCACCCGCC
GTGGGCAGCCCTGCTGGTACAAGGTATGTCGTTTGTATTTCGTAGTATTT
AATAGCGGCATATATTCGCAGGTTTGTCGCGGCAGCGTGCTTGGCTGGGC
GGTCGAATGGCTACAGGCATTCTTCCTCGTGGCCGATGACGTTATGGACA
AGAGCCTCACCCGCCGTGGGCAGCCCTGCTGGTACAAGGTATGTCGTTTG
TATTTCGTAGTATTTAATAGCGGCATATAT
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