mRNA_F-distichus_contig100809.64.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100809.64.1
Unique NamemRNA_F-distichus_contig100809.64.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: D8LGJ4_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ4_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.610e-63
Identity = 109/118 (92.37%), Postives = 114/118 (96.61%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYT 354
            HVLGNPEAERMLL LGSMCKSV+ACRVSPAQKRLIVRLVKRGVVPTPVTL+IGDGANDVGMIQEAQIGVGISGKEGRQAVNN+DFAIAQFRFLKRLMLVHGHWDYRR+CKV   ILY+
Sbjct:  856 HVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKV---ILYS 970
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A836CHZ9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ9_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.980e-52
Identity = 87/120 (72.50%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTEL 360
            H+LG+ + + + L +  MC+SVVACRVSPAQKRL+VRLVK+ V P P+TLAIGDGANDVGMIQEAQ+GVG+SGKEGRQAVNNADFAIAQFRFL+RL+LVHGHWDYRR+CKV     Y  +
Sbjct:  953 HILGHDDKQALFLRVACMCRSVVACRVSPAQKRLLVRLVKKNVRPAPITLAIGDGANDVGMIQEAQVGVGMSGKEGRQAVNNADFAIAQFRFLRRLLLVHGHWDYRRLCKVILYSFYKNI 1072
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: W7TGI1_9STRA (Phospholipid-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGI1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.660e-49
Identity = 87/120 (72.50%), Postives = 102/120 (85.00%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTEL 360
            HVLG+PE E M L L S+C+SVVACRVSPAQKRL+VRLVK GV P P+TL+IGDGANDV MIQEAQIGVGISGKEG+QAVN+ADFAIAQFR+L+RL+L+HG +DYRR+ KV     Y  +
Sbjct:  833 HVLGDPEYEAMFLRLSSICRSVVACRVSPAQKRLVVRLVKAGVKPMPITLSIGDGANDVAMIQEAQIGVGISGKEGQQAVNSADFAIAQFRYLRRLLLIHGRYDYRRMSKVILYSFYKNM 952
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A7S4D8B9_HETAK (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8B9_HETAK)

HSP 1 Score: 174 bits (441), Expect = 5.110e-49
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTEL 360
            H++G  E ER  L +  +C+SV+ACRVSP QKRL+VRLVK GV   P+TLA+GDGANDVGMIQEAQ+GVGISGKEGRQAVN ADFAIAQFRFL+RL+ +HG WDYRR CKV     Y  +
Sbjct:  173 HIMGRAELERKFLRVARLCRSVIACRVSPEQKRLLVRLVKLGVEGAPITLAVGDGANDVGMIQEAQVGVGISGKEGRQAVNTADFAIAQFRFLRRLLFLHGRWDYRRTCKVVLYSFYKNM 292
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A7S3XT36_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT36_HETAK)

HSP 1 Score: 159 bits (403), Expect = 7.930e-48
Identity = 76/119 (63.87%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTE 357
            HVLG+   E ML  + S+C +V+ACRVSP QK L+V +VK+ + PTPVTLAIGDGANDV MIQEAQ+GVGISG EG+QAVN++DFAIAQFR+LK L+LVHG W+YRR+C +   + Y  
Sbjct:   10 HVLGDDALEWMLFQVASLCNTVIACRVSPKQKALLVGMVKKYISPTPVTLAIGDGANDVNMIQEAQVGVGISGNEGQQAVNSSDFAIAQFRYLKPLLLVHGRWNYRRLCLLVKYMFYKN 128
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A7S1ZM93_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZM93_TRICV)

HSP 1 Score: 163 bits (412), Expect = 5.040e-45
Identity = 78/119 (65.55%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTE 357
            H LG+P+ E ML A+ S C SV+ACRVSP QK L+VR+V++ V PTPVTLAIGDGANDVGMIQEA +GVGISG EG+QAVN +DFAIAQFRFL+ L+L+HG W++ R+CKV     Y  
Sbjct:  233 HFLGDPQYEEMLFAVASSCDSVIACRVSPKQKALMVRMVRKYVEPTPVTLAIGDGANDVGMIQEAHVGVGISGLEGQQAVNASDFAIAQFRFLRELLLIHGRWNFIRMCKVVLFSFYKN 351
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A7R9ZF58_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF58_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.410e-44
Identity = 78/119 (65.55%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTE 357
            H+LG+P+ E ML A+ S C SV+ACRVSP QK L+VRLV++ V+PTPVTLAIGDGANDVGMIQEA +G+GISG EG+QAVN +DFAIAQFRFL+ L+L+HG W+Y R+ KV     Y  
Sbjct: 1419 HLLGDPKLEEMLFAVASACDSVIACRVSPKQKALLVRLVRKYVLPTPVTLAIGDGANDVGMIQEAHVGIGISGLEGQQAVNASDFAIAQFRFLRDLLLIHGRWNYSRLAKVALYSFYKN 1537
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A7S2CMU9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMU9_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.510e-44
Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:    4 VLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTE 357
            ++ + EA   LL LG  CK+V+ACRVSPAQK+LIV++VK G+   P+TL+IGDGANDV MIQEAQIGVGISGKEGRQAVN++DFAIAQFRFLKRL+LVHG W+Y R  KV     Y  
Sbjct:   49 IMDDEEARHQLLQLGCFCKAVLACRVSPAQKQLIVKMVKDGLPTKPITLSIGDGANDVPMIQEAQIGVGISGKEGRQAVNSSDFAIAQFRFLKRLLLVHGRWNYLRTAKVIIYSFYKN 166
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A7S2GET8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GET8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 5.530e-44
Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 1 
Query:    4 VLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKV 333
            +  +PE +  LL +   C+ VVACRVSP QK+LIV LV+ G+   PVTLAIGDGANDVGMIQEAQIGVGISG EGRQAVNN+DFAIAQF+FLKRL++VHG W+YRRI KV
Sbjct:   19 IFKHPEMKAKLLRIACFCRVVVACRVSPKQKQLIVDLVQTGLARRPVTLAIGDGANDVGMIQEAQIGVGISGHEGRQAVNNSDFAIAQFKFLKRLLIVHGRWNYRRISKV 128
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BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Match: A0A7S1C2W0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2W0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.090e-43
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 HVLGNPEAERMLLALGSMCKSVVACRVSPAQKRLIVRLVK-----RGVVPTPVTLAIGDGANDVGMIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICKVPYLILYTEL 360
            H+LG+PE+E  L+ +  +CKSV+ACRVSP QK  +V LV+     R     P+ LAIGDGANDVGMIQ+AQ+GVGISGKEG QAVN++DFAIAQFRFL+RL+LVHG W YRR+ KV     Y  +
Sbjct:   46 HILGDPESEHALMVVAQLCKSVIACRVSPKQKADLVDLVRHRSPGRSGKNKPMCLAIGDGANDVGMIQQAQVGVGISGKEGLQAVNSSDFAIAQFRFLRRLLLVHGRWSYRRMSKVVLYSFYKNI 170
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100809.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGJ4_ECTSI2.610e-6392.37Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
A0A836CHZ9_9STRA3.980e-5272.50Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
W7TGI1_9STRA2.660e-4972.50Phospholipid-transporting ATPase n=2 Tax=Monodopsi... [more]
A0A7S4D8B9_HETAK5.110e-4968.33Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A7S3XT36_HETAK7.930e-4863.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1ZM93_TRICV5.040e-4565.55Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7R9ZF58_9STRA1.410e-4465.55Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2CMU9_9STRA3.510e-4466.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2GET8_9STRA5.530e-4470.91Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1C2W0_9STRA1.090e-4360.80Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100809contigF-distichus_contig100809:1064..1785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue7.6e-47
Seed eggNOG ortholog2880.D8LGJ4
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
Hectar predicted targeting categorymitochondrion
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Exons2
Model size363
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100809.64.1prot_F-distichus_contig100809.64.1Fucus distichus monoicouspolypeptideF-distichus_contig100809 1094..1785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.926023-UTR-F-distichus_contig100809:1063..10931622928925.926023-UTR-F-distichus_contig100809:1063..1093Fucus distichus monoicousUTRF-distichus_contig100809 1064..1093 +
1690885066.9744575-UTR-F-distichus_contig100809:1063..10931690885066.9744575-UTR-F-distichus_contig100809:1063..1093Fucus distichus monoicousUTRF-distichus_contig100809 1064..1093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.942728-CDS-F-distichus_contig100809:1093..12611622928925.942728-CDS-F-distichus_contig100809:1093..1261Fucus distichus monoicousCDSF-distichus_contig100809 1094..1261 +
1690885067.0583348-CDS-F-distichus_contig100809:1093..12611690885067.0583348-CDS-F-distichus_contig100809:1093..1261Fucus distichus monoicousCDSF-distichus_contig100809 1094..1261 +
1622928925.9648943-CDS-F-distichus_contig100809:1620..17851622928925.9648943-CDS-F-distichus_contig100809:1620..1785Fucus distichus monoicousCDSF-distichus_contig100809 1621..1785 +
1690885067.0675025-CDS-F-distichus_contig100809:1620..17851690885067.0675025-CDS-F-distichus_contig100809:1620..1785Fucus distichus monoicousCDSF-distichus_contig100809 1621..1785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100809.64.1

>prot_F-distichus_contig100809.64.1 ID=prot_F-distichus_contig100809.64.1|Name=mRNA_F-distichus_contig100809.64.1|organism=Fucus distichus monoicous|type=polypeptide|length=111bp
MLLALGSMCKSVVACRVSPAQKRLIVRLVKRGVVPTPVTLAIGDGANDVG
MIQEAQIGVGISGKEGRQAVNNADFAIAQFRFLKRLMLVHGHWDYRRICK
VPYLILYTEL*
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mRNA from alignment at F-distichus_contig100809:1064..1785+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100809.64.1 ID=mRNA_F-distichus_contig100809.64.1|Name=mRNA_F-distichus_contig100809.64.1|organism=Fucus distichus monoicous|type=mRNA|length=722bp|location=Sequence derived from alignment at F-distichus_contig100809:1064..1785+ (Fucus distichus monoicous)
CACGTTCTCGGTAACCCGGAGGCGGAGAGAATGCTCCTGGCCCTGGGGAG
CATGTGCAAGAGCGTGGTGGCTTGCAGGGTCAGCCCGGCTCAGAAGCGGC
TGATCGTGCGGCTCGTGAAGAGAGGGGTCGTGCCGACGCCGGTGACCCTC
GCCATCGGAGACGGGGCCAATGACGTCGGAATGATTCAGGAGGCGCAGGT
CCGTTGGGGGGGTATGGTTGTGAGGCGTTTCGAAGAGGGATATTGGTGAA
GTGAGGATGCGAAGAAGATTTTACAGAGTGAGGAAGGGAATATTTTCATT
TGGTAAGGGAAGGTTTTCACATAATCAGGCAGGGGTTTTGCGTCGTAACG
GTTACATGTTTTGTGTGGGGGAGAAGGGATTAGGGGGGATATAGATCGCG
GGTTTTGAGAGGTTTGAGTAAGAATTAAGAGAGGCGATGGTTTTAAAAGC
TCGGTTCTGTCAAAATGATCGTCTACGATAGATCTTTTGGCTGACTTGGC
TCTCTTGCATGCACCCTTGCCCCTTGCACACGCCTTCACATGCTTGAAAC
CCGTCAGATCGGCGTTGGCATCAGCGGCAAGGAGGGGCGTCAGGCGGTAA
ACAACGCAGACTTCGCGATCGCCCAGTTCCGATTCCTGAAGAGGCTCATG
CTCGTGCATGGTCACTGGGACTACCGACGAATCTGCAAGGTACCTTATCT
TATTTTATATACGGAGCTATAG
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Coding sequence (CDS) from alignment at F-distichus_contig100809:1064..1785+

>mRNA_F-distichus_contig100809.64.1 ID=mRNA_F-distichus_contig100809.64.1|Name=mRNA_F-distichus_contig100809.64.1|organism=Fucus distichus monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at F-distichus_contig100809:1064..1785+ (Fucus distichus monoicous)
ATGCTCCTGGCCCTGGGGAGCATGTGCAAGAGCGTGGTGGCTTGCAGGGT
CAGCCCGGCTCAGAAGCGGCTGATCGTGCGGCTCGTGAAGAGAGGGGTCG
TGCCGACGCCGGTGACCCTCGCCATCGGAGACGGGGCCAATGACGTCGGA
ATGATTCAGGAGGCGCAGATGCTCCTGGCCCTGGGGAGCATGTGCAAGAG
CGTGGTGGCTTGCAGGGTCAGCCCGGCTCAGAAGCGGCTGATCGTGCGGC
TCGTGAAGAGAGGGGTCGTGCCGACGCCGGTGACCCTCGCCATCGGAGAC
GGGGCCAATGACGTCGGAATGATTCAGGAGGCGCAGATCGGCGTTGGCAT
CAGCGGCAAGGAGGGGCGTCAGGCGGTAAACAACGCAGACTTCGCGATCG
CCCAGTTCCGATTCCTGAAGAGGCTCATGCTCGTGCATGGTCACTGGGAC
TACCGACGAATCTGCAAGGTACCTTATCTTATTTTATATACGGAGCTATA
GATCGGCGTTGGCATCAGCGGCAAGGAGGGGCGTCAGGCGGTAAACAACG
CAGACTTCGCGATCGCCCAGTTCCGATTCCTGAAGAGGCTCATGCTCGTG
CATGGTCACTGGGACTACCGACGAATCTGCAAGGTACCTTATCTTATTTT
ATATACGGAGCTATAG
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