mRNA_F-distichus_contig100761.61.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100761.61.1
Unique NamemRNA_F-distichus_contig100761.61.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100761.61.1 vs. uniprot
Match: D8LCE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 9.730e-10
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 QLVVFGDSLSDRGRRFEAPASFKFEGIGVYPFEEIYKA 114
            ++VVFGDS SD GRR+ APAS+ FEGIGVYP+ ++Y+A
Sbjct:   48 KMVVFGDSQSDTGRRYNAPASYVFEGIGVYPWPKLYEA 85
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BLAST of mRNA_F-distichus_contig100761.61.1 vs. uniprot
Match: D8LHV8_ECTSI (GDSL-like lipolytic enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHV8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.680e-8
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 QLVVFGDSLSDRGRRFEAPASFKFEGIGVYPFEEIYKAN 117
            +++VFGDS SD GRRF+AP  + F  IGVYP+E++Y A+
Sbjct:   81 KIIVFGDSNSDAGRRFDAPNVYPFSDIGVYPWEKVYDAD 119
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BLAST of mRNA_F-distichus_contig100761.61.1 vs. uniprot
Match: A0A6H5KTW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW7_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 3.840e-5
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    4 LVVFGDSLSDRGRRFEAPASFKF--EGIGVYPFEEIY 108
            +VVFGDS SD G RF  P+SF+F  +GIG +P++ +Y
Sbjct:    1 MVVFGDSNSDTGSRFNTPSSFQFKDDGIGAFPWKRLY 37
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BLAST of mRNA_F-distichus_contig100761.61.1 vs. uniprot
Match: D7FJN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN5_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 4.080e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 QLVVFGDSLSDRGRRFEAPASF--KFEGIGVYPFEEIY 108
            ++VVFGDS SD GRR+ AP SF  K +GIG +P++ +Y
Sbjct:   40 KMVVFGDSNSDTGRRYNAPNSFQLKEDGIGAFPWKRLY 77
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100761.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCE7_ECTSI9.730e-1065.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LHV8_ECTSI5.680e-856.41GDSL-like lipolytic enzyme n=2 Tax=Ectocarpus TaxI... [more]
A0A6H5KTW7_9PHAE3.840e-554.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJN5_ECTSI4.080e-555.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100761contigF-distichus_contig100761:335..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.6437097-CDS-F-distichus_contig100761:334..4511622928925.6437097-CDS-F-distichus_contig100761:334..451Fucus distichus monoicousCDSF-distichus_contig100761 335..451 -
1690885066.5050538-CDS-F-distichus_contig100761:334..4511690885066.5050538-CDS-F-distichus_contig100761:334..451Fucus distichus monoicousCDSF-distichus_contig100761 335..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100761.61.1prot_F-distichus_contig100761.61.1Fucus distichus monoicouspolypeptideF-distichus_contig100761 335..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100761.61.1

>prot_F-distichus_contig100761.61.1 ID=prot_F-distichus_contig100761.61.1|Name=mRNA_F-distichus_contig100761.61.1|organism=Fucus distichus monoicous|type=polypeptide|length=39bp
QLVVFGDSLSDRGRRFEAPASFKFEGIGVYPFEEIYKAN
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mRNA from alignment at F-distichus_contig100761:335..451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100761.61.1 ID=mRNA_F-distichus_contig100761.61.1|Name=mRNA_F-distichus_contig100761.61.1|organism=Fucus distichus monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at F-distichus_contig100761:335..451- (Fucus distichus monoicous)
CAGTTGGTGGTCTTCGGGGACTCTCTCAGCGATCGAGGCCGACGGTTCGA
AGCTCCTGCAAGCTTCAAATTTGAGGGCATCGGCGTTTACCCATTTGAAG
AAATCTACAAAGCGAAT
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Coding sequence (CDS) from alignment at F-distichus_contig100761:335..451-

>mRNA_F-distichus_contig100761.61.1 ID=mRNA_F-distichus_contig100761.61.1|Name=mRNA_F-distichus_contig100761.61.1|organism=Fucus distichus monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at F-distichus_contig100761:335..451- (Fucus distichus monoicous)
CAGTTGGTGGTCTTCGGGGACTCTCTCAGCGATCGAGGCCGACGGTTCGA
AGCTCCTGCAAGCTTCAAATTTGAGGGCATCGGCGTTTACCCATTTGAAG
AAATCTACAAAGCGAATCAGTTGGTGGTCTTCGGGGACTCTCTCAGCGAT
CGAGGCCGACGGTTCGAAGCTCCTGCAAGCTTCAAATTTGAGGGCATCGG
CGTTTACCCATTTGAAGAAATCTACAAAGCGAAT
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