mRNA_F-distichus_contig10071.60.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10071.60.1
Unique NamemRNA_F-distichus_contig10071.60.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10071.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10071contigF-distichus_contig10071:5650..7541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1892
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10071.60.1prot_F-distichus_contig10071.60.1Fucus distichus monoicouspolypeptideF-distichus_contig10071 5750..7000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.5649033-UTR-F-distichus_contig10071:5649..57491622928925.5649033-UTR-F-distichus_contig10071:5649..5749Fucus distichus monoicousUTRF-distichus_contig10071 5650..5749 +
1690885066.4653354-UTR-F-distichus_contig10071:5649..57491690885066.4653354-UTR-F-distichus_contig10071:5649..5749Fucus distichus monoicousUTRF-distichus_contig10071 5650..5749 +
1622928925.5986595-UTR-F-distichus_contig10071:7000..75411622928925.5986595-UTR-F-distichus_contig10071:7000..7541Fucus distichus monoicousUTRF-distichus_contig10071 7001..7541 +
1690885066.4969037-UTR-F-distichus_contig10071:7000..75411690885066.4969037-UTR-F-distichus_contig10071:7000..7541Fucus distichus monoicousUTRF-distichus_contig10071 7001..7541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.584017-CDS-F-distichus_contig10071:5749..70001622928925.584017-CDS-F-distichus_contig10071:5749..7000Fucus distichus monoicousCDSF-distichus_contig10071 5750..7000 +
1690885066.4858186-CDS-F-distichus_contig10071:5749..70001690885066.4858186-CDS-F-distichus_contig10071:5749..7000Fucus distichus monoicousCDSF-distichus_contig10071 5750..7000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10071.60.1

>prot_F-distichus_contig10071.60.1 ID=prot_F-distichus_contig10071.60.1|Name=mRNA_F-distichus_contig10071.60.1|organism=Fucus distichus monoicous|type=polypeptide|length=417bp
MNDASDERHGTSEKNARKKYNNSCSIETCLKGKSFGVPGSRRREFCGKHA
PAGMVNLSALKCVHPGCSTIPGYGFPGRKKENCSKHALEGMVNLSSKMCG
HPGCKKQSSMGVPGSKIREFCVEHARKGMICLQSRKCKQCECYKQATLGV
AGSRTPEYCADHAPEGMVGVRDRSCRFEGCRTQASQGAAGTGKPLYCSKH
SEAGMVSCNVTVCKHDECRCQASFGVAGSKREFCSKHASTGMINLKYKFC
GHRGCFKHPSYGDTRSGKAEYCAGHAPKGMVGVKRKKSCSHPGCQKTPFF
SEDGFETSKFCAEHATKGMVNLKRENKCAYEGCVAWLLPGASVSGSKTAF
CGEHVFIGFASIRCKVPVRQRDMDAAGTRAHSEPPNDNVARKQKVGKNGG
GSAVRVTKKRACRETA*
back to top

mRNA from alignment at F-distichus_contig10071:5650..7541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10071.60.1 ID=mRNA_F-distichus_contig10071.60.1|Name=mRNA_F-distichus_contig10071.60.1|organism=Fucus distichus monoicous|type=mRNA|length=1892bp|location=Sequence derived from alignment at F-distichus_contig10071:5650..7541+ (Fucus distichus monoicous)
AGGACGCAAACATGCATGTCGTGAGCATCGCACAAACACCTACAAACTCC
AACTTCCCCCCCGGCAACCTCGAACCTTGTCCCGCCGCTGCAGTGGCAAG
ATGAACGACGCGAGCGACGAACGACATGGTACCTCAGAAAAGAATGCGCG
CAAGAAATATAACAATAGTTGCAGCATCGAAACGTGCTTAAAGGGGAAGT
CGTTCGGCGTGCCCGGCAGCCGGAGACGCGAGTTCTGTGGTAAACACGCC
CCAGCGGGAATGGTTAACCTTTCCGCGCTGAAATGCGTCCATCCGGGGTG
CTCAACGATCCCGGGGTATGGCTTTCCTGGCAGGAAAAAGGAAAACTGTT
CGAAGCATGCCTTGGAGGGGATGGTCAACTTGTCTTCGAAGATGTGCGGT
CACCCGGGCTGTAAGAAGCAATCATCCATGGGCGTACCCGGCAGCAAAAT
ACGGGAGTTCTGCGTCGAGCACGCTCGCAAGGGGATGATTTGTCTCCAAT
CAAGAAAGTGCAAGCAATGCGAATGCTACAAGCAGGCCACTCTTGGCGTG
GCTGGTAGTAGGACGCCTGAGTACTGCGCCGATCATGCTCCTGAGGGGAT
GGTGGGCGTAAGAGACAGAAGTTGCCGGTTTGAAGGGTGTCGCACGCAAG
CGTCACAAGGCGCGGCCGGGACTGGGAAACCCTTGTACTGCTCCAAGCAC
TCTGAGGCGGGGATGGTCAGCTGCAACGTCACCGTCTGCAAGCACGACGA
GTGCCGCTGCCAAGCTTCTTTCGGCGTGGCAGGAAGTAAAAGGGAGTTCT
GTTCCAAACACGCCTCAACGGGGATGATTAACTTGAAGTATAAGTTTTGC
GGTCACAGGGGATGCTTCAAGCACCCGTCATATGGTGATACTCGGAGTGG
AAAGGCGGAGTATTGCGCAGGGCACGCGCCCAAGGGGATGGTCGGCGTCA
AACGCAAGAAGAGCTGCAGTCACCCTGGATGCCAGAAAACCCCGTTTTTC
AGCGAAGACGGCTTCGAAACATCGAAATTTTGCGCCGAGCATGCCACGAA
AGGTATGGTGAACTTGAAGCGGGAGAACAAGTGCGCCTATGAAGGATGTG
TGGCGTGGCTACTACCAGGCGCGTCTGTCAGCGGTAGCAAGACAGCATTC
TGCGGAGAACATGTCTTTATCGGATTTGCCTCGATAAGGTGTAAGGTACC
TGTGAGGCAGCGTGATATGGATGCCGCCGGCACGCGTGCACATAGCGAAC
CTCCGAACGACAACGTAGCACGCAAGCAGAAGGTCGGAAAAAATGGCGGA
GGATCGGCAGTAAGAGTGACTAAGAAGAGAGCCTGTAGAGAAACCGCGTA
AAGGTCTACTGTGCAGAGTGGCTCACAACTTTCGTTTCCTGCGAAAGACG
CTGTCGCCCCTCTTTTCACTGACGTCAGGGTGTAGCATTGGACAGGATCA
ACTTTACGCCGCTGTCGAGATGTTGCTTCGGTCAACGTCGTAAGTTAAGT
TCGTACGACCATGGCAACAGAGACTTGGATCCCACCTGATTTATCCCAAA
AGGCGTTCATTTTTTTAGTCGGTCCATAGACAGTGGATCTTTAAAAGACT
GTGCATCTAATCCATTGACCCTAGTCTCACGAGTTGTTCTTTGCCACGTA
AAAAAAAAAAGGACACACTACGAGGAAGGGTAGATCAAATGCATCAAAGG
CATTATTCATGTGGGGAGTTCGTTAATTATGAAGGCGCTAATCGTGAAAT
AAGGGTTCCTTGTTCGGTCTCACTCATAGTAATATTAGTACGGGGTTTGG
GAAGAATGTGTACGTTTCTATGGAAATATAGACTAATAAGAGTGTTTTTC
TGGTATTTTACATATTTATGATGTTAAAAAAACGCGAAAGGG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig10071:5650..7541+

>mRNA_F-distichus_contig10071.60.1 ID=mRNA_F-distichus_contig10071.60.1|Name=mRNA_F-distichus_contig10071.60.1|organism=Fucus distichus monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at F-distichus_contig10071:5650..7541+ (Fucus distichus monoicous)
ATGAACGACGCGAGCGACGAACGACATGGTACCTCAGAAAAGAATGCGCG
CAAGAAATATAACAATAGTTGCAGCATCGAAACGTGCTTAAAGGGGAAGT
CGTTCGGCGTGCCCGGCAGCCGGAGACGCGAGTTCTGTGGTAAACACGCC
CCAGCGGGAATGGTTAACCTTTCCGCGCTGAAATGCGTCCATCCGGGGTG
CTCAACGATCCCGGGGTATGGCTTTCCTGGCAGGAAAAAGGAAAACTGTT
CGAAGCATGCCTTGGAGGGGATGGTCAACTTGTCTTCGAAGATGTGCGGT
CACCCGGGCTGTAAGAAGCAATCATCCATGGGCGTACCCGGCAGCAAAAT
ACGGGAGTTCTGCGTCGAGCACGCTCGCAAGGGGATGATTTGTCTCCAAT
CAAGAAAGTGCAAGCAATGCGAATGCTACAAGCAGGCCACTCTTGGCGTG
GCTGGTAGTAGGACGCCTGAGTACTGCGCCGATCATGCTCCTGAGGGGAT
GGTGGGCGTAAGAGACAGAAGTTGCCGGTTTGAAGGGTGTCGCACGCAAG
CGTCACAAGGCGCGGCCGGGACTGGGAAACCCTTGTACTGCTCCAAGCAC
TCTGAGGCGGGGATGGTCAGCTGCAACGTCACCGTCTGCAAGCACGACGA
GTGCCGCTGCCAAGCTTCTTTCGGCGTGGCAGGAAGTAAAAGGGAGTTCT
GTTCCAAACACGCCTCAACGGGGATGATTAACTTGAAGTATAAGTTTTGC
GGTCACAGGGGATGCTTCAAGCACCCGTCATATGGTGATACTCGGAGTGG
AAAGGCGGAGTATTGCGCAGGGCACGCGCCCAAGGGGATGGTCGGCGTCA
AACGCAAGAAGAGCTGCAGTCACCCTGGATGCCAGAAAACCCCGTTTTTC
AGCGAAGACGGCTTCGAAACATCGAAATTTTGCGCCGAGCATGCCACGAA
AGGTATGGTGAACTTGAAGCGGGAGAACAAGTGCGCCTATGAAGGATGTG
TGGCGTGGCTACTACCAGGCGCGTCTGTCAGCGGTAGCAAGACAGCATTC
TGCGGAGAACATGTCTTTATCGGATTTGCCTCGATAAGGTGTAAGGTACC
TGTGAGGCAGCGTGATATGGATGCCGCCGGCACGCGTGCACATAGCGAAC
CTCCGAACGACAACGTAGCACGCAAGCAGAAGGTCGGAAAAAATGGCGGA
GGATCGGCAGTAAGAGTGACTAAGAAGAGAGCCTGTAGAGAAACCGCGTA
AATGAACGACGCGAGCGACGAACGACATGGTACCTCAGAAAAGAATGCGC
GCAAGAAATATAACAATAGTTGCAGCATCGAAACGTGCTTAAAGGGGAAG
TCGTTCGGCGTGCCCGGCAGCCGGAGACGCGAGTTCTGTGGTAAACACGC
CCCAGCGGGAATGGTTAACCTTTCCGCGCTGAAATGCGTCCATCCGGGGT
GCTCAACGATCCCGGGGTATGGCTTTCCTGGCAGGAAAAAGGAAAACTGT
TCGAAGCATGCCTTGGAGGGGATGGTCAACTTGTCTTCGAAGATGTGCGG
TCACCCGGGCTGTAAGAAGCAATCATCCATGGGCGTACCCGGCAGCAAAA
TACGGGAGTTCTGCGTCGAGCACGCTCGCAAGGGGATGATTTGTCTCCAA
TCAAGAAAGTGCAAGCAATGCGAATGCTACAAGCAGGCCACTCTTGGCGT
GGCTGGTAGTAGGACGCCTGAGTACTGCGCCGATCATGCTCCTGAGGGGA
TGGTGGGCGTAAGAGACAGAAGTTGCCGGTTTGAAGGGTGTCGCACGCAA
GCGTCACAAGGCGCGGCCGGGACTGGGAAACCCTTGTACTGCTCCAAGCA
CTCTGAGGCGGGGATGGTCAGCTGCAACGTCACCGTCTGCAAGCACGACG
AGTGCCGCTGCCAAGCTTCTTTCGGCGTGGCAGGAAGTAAAAGGGAGTTC
TGTTCCAAACACGCCTCAACGGGGATGATTAACTTGAAGTATAAGTTTTG
CGGTCACAGGGGATGCTTCAAGCACCCGTCATATGGTGATACTCGGAGTG
GAAAGGCGGAGTATTGCGCAGGGCACGCGCCCAAGGGGATGGTCGGCGTC
AAACGCAAGAAGAGCTGCAGTCACCCTGGATGCCAGAAAACCCCGTTTTT
CAGCGAAGACGGCTTCGAAACATCGAAATTTTGCGCCGAGCATGCCACGA
AAGGTATGGTGAACTTGAAGCGGGAGAACAAGTGCGCCTATGAAGGATGT
GTGGCGTGGCTACTACCAGGCGCGTCTGTCAGCGGTAGCAAGACAGCATT
CTGCGGAGAACATGTCTTTATCGGATTTGCCTCGATAAGGTGTAAGGTAC
CTGTGAGGCAGCGTGATATGGATGCCGCCGGCACGCGTGCACATAGCGAA
CCTCCGAACGACAACGTAGCACGCAAGCAGAAGGTCGGAAAAAATGGCGG
AGGATCGGCAGTAAGAGTGACTAAGAAGAGAGCCTGTAGAGAAACCGCGT
AA
back to top