mRNA_F-distichus_contig100659.57.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100659.57.1
Unique NamemRNA_F-distichus_contig100659.57.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100659.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100659contigF-distichus_contig100659:371..1926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size543
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100659.57.1prot_F-distichus_contig100659.57.1Fucus distichus monoicouspolypeptideF-distichus_contig100659 371..1926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.194632-CDS-F-distichus_contig100659:370..5051622928925.194632-CDS-F-distichus_contig100659:370..505Fucus distichus monoicousCDSF-distichus_contig100659 371..505 +
1690885065.0328968-CDS-F-distichus_contig100659:370..5051690885065.0328968-CDS-F-distichus_contig100659:370..505Fucus distichus monoicousCDSF-distichus_contig100659 371..505 +
1622928925.2158678-CDS-F-distichus_contig100659:1048..12761622928925.2158678-CDS-F-distichus_contig100659:1048..1276Fucus distichus monoicousCDSF-distichus_contig100659 1049..1276 +
1690885065.0469308-CDS-F-distichus_contig100659:1048..12761690885065.0469308-CDS-F-distichus_contig100659:1048..1276Fucus distichus monoicousCDSF-distichus_contig100659 1049..1276 +
1622928925.231854-CDS-F-distichus_contig100659:1746..19261622928925.231854-CDS-F-distichus_contig100659:1746..1926Fucus distichus monoicousCDSF-distichus_contig100659 1747..1926 +
1690885065.1441753-CDS-F-distichus_contig100659:1746..19261690885065.1441753-CDS-F-distichus_contig100659:1746..1926Fucus distichus monoicousCDSF-distichus_contig100659 1747..1926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100659.57.1

>prot_F-distichus_contig100659.57.1 ID=prot_F-distichus_contig100659.57.1|Name=mRNA_F-distichus_contig100659.57.1|organism=Fucus distichus monoicous|type=polypeptide|length=181bp
SSLAQEDESFATIGAPSTRVSSSKLQPLLSEEEEDSGANAGRSMQDVHHG
TSVDRGSARYVRENTVPAFGGMVDVDITNGDIANDGITSGNIANGQGSVE
AQGLDGSHGFTGERRGFDFRTSPSVSGGTPEQPQHQQRAPAGSVAAESSD
NARLDGKGASNSSGKVDLELLSPEQLMPLGI
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mRNA from alignment at F-distichus_contig100659:371..1926+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100659.57.1 ID=mRNA_F-distichus_contig100659.57.1|Name=mRNA_F-distichus_contig100659.57.1|organism=Fucus distichus monoicous|type=mRNA|length=1556bp|location=Sequence derived from alignment at F-distichus_contig100659:371..1926+ (Fucus distichus monoicous)
TCGTCGCTCGCGCAAGAAGACGAGTCCTTTGCTACAATCGGGGCGCCGTC
CACCCGCGTGTCTTCTTCAAAATTGCAACCCTTGCTCTCTGAAGAAGAGG
AGGATTCGGGAGCGAATGCCGGCCGCAGCATGCAGGTGTGTGTGTGTGTG
TGTGTGGATGTATGTGCGCCAATTCTCCCAACTCCCATTCCCCTTTTCGA
CGCAAACGTCCTGTCGTATCAGCGAGGTCTATCCAGTTTTTAATAATGTG
TATGCGCCAATTTATCCCAACTCCCACTCCCTTTTTCGACGCAAACGCCT
TGTCTTATCGGTGAGGTCTATCCAGTTTTAATAACGTGTGTGCGCCAATT
CTCCCAACTCCCATTCTCCTTTTTGACCCAAACTCCTTGTCTTATCGGCG
AGGTCTATCCAGTTTTTAATCGGTCCGTGAGGTGTTTGACTTGTTGGTGT
TAACTCCTAGTCCGCCACCGACGGTCAGCTAACGCCATCCCACGCCCTCG
TAAACCGTGCTGGGTACATCCTGCATATGGTTAGTGAAAGAAAGAGCCGG
CGTACCTTACGCAAACTGCTGCACAGGCGACCTCATCGCGCCTTATCTTC
CTGTTGTGGAGTATCCCCCTTTAATCCCCCTCCCACCCACCCATTACCGC
CCCCCATCCCACGAATGCCGGCGAGCAGGATGTCCATCATGGGACGAGCG
TTGATCGGGGGAGTGCGCGGTACGTCCGCGAGAACACCGTCCCTGCATTC
GGCGGCATGGTGGACGTCGACATCACCAATGGTGATATCGCCAACGATGG
CATCACCTCCGGGAACATCGCCAACGGCCAAGGGAGCGTCGAAGCCCAGG
GGCTCGATGGTAGCCATGGATTCACGGGCGAACGACGTGGCTTCGATTTT
CGAACGGTGAGGAGGAGTGAGTTTTTTTTTAAAGTAGCGGCCTTTTCGTT
ATAGCCACAGCCACCGGTCGAAAGCCTGCCGAAATTGTCACCGTGTTGTG
GTCCGAACCAATGGCTTGATATGATTGACTGCGCTCGATTGCTCGTTCAG
AATCGGGTTCGTGGATCCAAATATTTTCCGCGTACACGAGCACGTCCTAC
TTCAGCTCTTCCTGGAGTAGTTGAAGATTCCTGTTGCTGTCGTTGTTGTT
GGAGTAGGAAAACCCCCAAAACCACCCGTCGAACTGGTACTGGACATTGT
TGTTTTGTCCTACCACGTTCCTCGTACACGTCTCCCCTCCCCCCCCCCAC
ACCGGCCTCTTATTTTGGTAACCCTCGCGTCTAGATGTGTCTCGTAACGC
ACAACCCTCTCCCCCCTCTTTTTTTCATTCACACATGCCTCTGGTGTCTT
CTCGGCTGTCTTCTATCTTCTCTCAGTCGCCTTCTGTGTCGGGAGGCACG
CCGGAACAGCCGCAGCATCAGCAACGTGCCCCGGCGGGATCGGTTGCAGC
TGAATCCTCCGATAACGCTCGGCTCGACGGAAAGGGCGCGAGCAACTCGT
CTGGAAAAGTGGACCTGGAATTGCTGTCGCCGGAGCAGCTCATGCCCCTG
GGGATC
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Coding sequence (CDS) from alignment at F-distichus_contig100659:371..1926+

>mRNA_F-distichus_contig100659.57.1 ID=mRNA_F-distichus_contig100659.57.1|Name=mRNA_F-distichus_contig100659.57.1|organism=Fucus distichus monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at F-distichus_contig100659:371..1926+ (Fucus distichus monoicous)
TCGTCGCTCGCGCAAGAAGACGAGTCCTTTGCTACAATCGGGGCGCCGTC
CACCCGCGTGTCTTCTTCAAAATTGCAACCCTTGCTCTCTGAAGAAGAGG
AGGATTCGGGAGCGAATGCCGGCCGCAGCATGCAGTCGTCGCTCGCGCAA
GAAGACGAGTCCTTTGCTACAATCGGGGCGCCGTCCACCCGCGTGTCTTC
TTCAAAATTGCAACCCTTGCTCTCTGAAGAAGAGGAGGATTCGGGAGCGA
ATGCCGGCCGCAGCATGCAGGATGTCCATCATGGGACGAGCGTTGATCGG
GGGAGTGCGCGGTACGTCCGCGAGAACACCGTCCCTGCATTCGGCGGCAT
GGTGGACGTCGACATCACCAATGGTGATATCGCCAACGATGGCATCACCT
CCGGGAACATCGCCAACGGCCAAGGGAGCGTCGAAGCCCAGGGGCTCGAT
GGTAGCCATGGATTCACGGGCGAACGACGTGGCTTCGATTTTCGAACGGA
TGTCCATCATGGGACGAGCGTTGATCGGGGGAGTGCGCGGTACGTCCGCG
AGAACACCGTCCCTGCATTCGGCGGCATGGTGGACGTCGACATCACCAAT
GGTGATATCGCCAACGATGGCATCACCTCCGGGAACATCGCCAACGGCCA
AGGGAGCGTCGAAGCCCAGGGGCTCGATGGTAGCCATGGATTCACGGGCG
AACGACGTGGCTTCGATTTTCGAACGTCGCCTTCTGTGTCGGGAGGCACG
CCGGAACAGCCGCAGCATCAGCAACGTGCCCCGGCGGGATCGGTTGCAGC
TGAATCCTCCGATAACGCTCGGCTCGACGGAAAGGGCGCGAGCAACTCGT
CTGGAAAAGTGGACCTGGAATTGCTGTCGCCGGAGCAGCTCATGCCCCTG
GGGATCTCGCCTTCTGTGTCGGGAGGCACGCCGGAACAGCCGCAGCATCA
GCAACGTGCCCCGGCGGGATCGGTTGCAGCTGAATCCTCCGATAACGCTC
GGCTCGACGGAAAGGGCGCGAGCAACTCGTCTGGAAAAGTGGACCTGGAA
TTGCTGTCGCCGGAGCAGCTCATGCCCCTGGGGATC
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