mRNA_F-distichus_contig100658.56.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100658.56.1
Unique NamemRNA_F-distichus_contig100658.56.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100658.56.1 vs. uniprot
Match: A0A6H5KFF6_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.810e-8
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 DGYWSIDLTDLKLGQDSALRTKATAILDTGTSMVVGPYDDVGYV 132
            +G+WS+ L D+K G +S L ++A AILDTG S++ GP+DDV  +
Sbjct:  255 EGFWSVGLRDIKYGSESMLSSRAAAILDTGASLIQGPFDDVAMI 298
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BLAST of mRNA_F-distichus_contig100658.56.1 vs. uniprot
Match: A0A6H5KFQ5_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFQ5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.200e-8
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 DGYWSIDLTDLKLGQDSALRTKATAILDTGTSMVVGPYDDVGYV 132
            DG+WSI L ++ +G  S LR+  +AI DTGTSM+VGP+ DV Y+
Sbjct:  266 DGFWSIVLQNIYVGSSSVLRSPISAIFDTGTSMIVGPFADVAYL 309
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BLAST of mRNA_F-distichus_contig100658.56.1 vs. uniprot
Match: A0A1R2B5Q8_9CILI (Peptidase A1 domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B5Q8_9CILI)

HSP 1 Score: 48.1 bits (113), Expect = 3.750e-5
Identity = 18/44 (40.91%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 DGYWSIDLTDLKLGQDSALRTKATAILDTGTSMVVGPYDDVGYV 132
            DGYWS+ L+ +++     ++   TA+LDTGTS+++GP  +V  V
Sbjct:  214 DGYWSLSLSSIQVNSKKIIKASYTAVLDTGTSLIIGPSYEVNQV 257
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100658.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFF6_9PHAE3.810e-850.00Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KFQ5_9PHAE5.200e-854.55Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
A0A1R2B5Q8_9CILI3.750e-540.91Peptidase A1 domain-containing protein n=1 Tax=Ste... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100658contigF-distichus_contig100658:52..183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.133349-CDS-F-distichus_contig100658:51..1831622928925.133349-CDS-F-distichus_contig100658:51..183Fucus distichus monoicousCDSF-distichus_contig100658 52..183 +
1690885064.9575129-CDS-F-distichus_contig100658:51..1831690885064.9575129-CDS-F-distichus_contig100658:51..183Fucus distichus monoicousCDSF-distichus_contig100658 52..183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100658.56.1prot_F-distichus_contig100658.56.1Fucus distichus monoicouspolypeptideF-distichus_contig100658 52..183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100658.56.1

>prot_F-distichus_contig100658.56.1 ID=prot_F-distichus_contig100658.56.1|Name=mRNA_F-distichus_contig100658.56.1|organism=Fucus distichus monoicous|type=polypeptide|length=44bp
DGYWSIDLTDLKLGQDSALRTKATAILDTGTSMVVGPYDDVGYV
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mRNA from alignment at F-distichus_contig100658:52..183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100658.56.1 ID=mRNA_F-distichus_contig100658.56.1|Name=mRNA_F-distichus_contig100658.56.1|organism=Fucus distichus monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at F-distichus_contig100658:52..183+ (Fucus distichus monoicous)
GACGGGTACTGGTCGATTGACCTCACGGACCTAAAGCTGGGACAAGACAG
CGCGCTCCGCACCAAGGCAACCGCCATCCTGGACACGGGCACTTCGATGG
TGGTGGGGCCGTACGATGACGTGGGATATGTG
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Coding sequence (CDS) from alignment at F-distichus_contig100658:52..183+

>mRNA_F-distichus_contig100658.56.1 ID=mRNA_F-distichus_contig100658.56.1|Name=mRNA_F-distichus_contig100658.56.1|organism=Fucus distichus monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at F-distichus_contig100658:52..183+ (Fucus distichus monoicous)
GACGGGTACTGGTCGATTGACCTCACGGACCTAAAGCTGGGACAAGACAG
CGCGCTCCGCACCAAGGCAACCGCCATCCTGGACACGGGCACTTCGATGG
TGGTGGGGCCGTACGATGACGTGGGATATGTGGACGGGTACTGGTCGATT
GACCTCACGGACCTAAAGCTGGGACAAGACAGCGCGCTCCGCACCAAGGC
AACCGCCATCCTGGACACGGGCACTTCGATGGTGGTGGGGCCGTACGATG
ACGTGGGATATGTG
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