mRNA_F-distichus_contig100621.55.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100621.55.1
Unique NamemRNA_F-distichus_contig100621.55.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100621.55.1 vs. uniprot
Match: D8LRY4_ECTSI (Telomere_reg-2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.230e-16
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 SGGIGGKYL--ISGDPEVLPLLIRGVSTRLDVATRETRLQGMRVGEAVATLSGQELRFDELDAERREREEGDPPG 219
            SGG+ G+    + GD + L +LIRGV + LDV  RETRL+GMRVGEAVA L G ELRFDELD ER E+   +P G
Sbjct:  605 SGGLDGQLGGGVDGDQDTLVILIRGVGSHLDVPVRETRLRGMRVGEAVAALGGTELRFDELDGEREEQRREEPRG 679
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100621.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRY4_ECTSI5.230e-1658.67Telomere_reg-2 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100621contigF-distichus_contig100621:9..227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue7.3e-14
Seed eggNOG ortholog2880.D8LRY4
Preferred nameTELO2
KEGG koko:K11137,ko:K14834,ko:K22399
KEGG Pathwayko03460,ko04150,map03460,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0001505,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0006139,GO:0006259,GO:0006278,GO:0006325,GO:0006338,GO:0006725,GO:0006807,GO:0006810,GO:0006836,GO:0006897,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010165,GO:0010212,GO:0010259,GO:0010389,GO:0010562,GO:0010564,GO:0010604,GO:0010646,GO:0010647,GO:0010833,GO:0010948,GO:0010972,GO:0012505,GO:0016043,GO:0016192,GO:0016604,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030154,GO:0031072,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031570,GO:0031647,GO:0031931,GO:0031932,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032200,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032947,GO:0032991,GO:0033036,GO:0033314,GO:0033365,GO:0033554,GO:0033674,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036465,GO:0038201,GO:0042162,GO:0042325,GO:0042327,GO:0042592,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044774,GO:0044818,GO:0044877,GO:0045786,GO:0045859,GO:0045860,GO:0045930,GO:0045937,GO:0046483,GO:0046903,GO:0048468,GO:0048477,GO:0048488,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051879,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070209,GO:0070727,GO:0071704,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0072395,GO:0072401,GO:0072413,GO:0072437,GO:0072443,GO:0080090,GO:0090304,GO:0097159,GO:0097708,GO:0098657,GO:0098687,GO:0098791,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902403,GO:1902531,GO:1902533,GO:1902749,GO:1902750,GO:1903047,GO:1903432,GO:1903939,GO:1904263,GO:1904515
EggNOG free text desc.positive regulation of TORC2 signaling
EggNOG OGsKOG4346@1,KOG4346@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03032,ko03036,ko03400
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.081425-CDS-F-distichus_contig100621:8..2271622928925.081425-CDS-F-distichus_contig100621:8..227Fucus distichus monoicousCDSF-distichus_contig100621 9..227 +
1690885064.9425309-CDS-F-distichus_contig100621:8..2271690885064.9425309-CDS-F-distichus_contig100621:8..227Fucus distichus monoicousCDSF-distichus_contig100621 9..227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100621.55.1prot_F-distichus_contig100621.55.1Fucus distichus monoicouspolypeptideF-distichus_contig100621 9..227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100621.55.1

>prot_F-distichus_contig100621.55.1 ID=prot_F-distichus_contig100621.55.1|Name=mRNA_F-distichus_contig100621.55.1|organism=Fucus distichus monoicous|type=polypeptide|length=73bp
SGGIGGKYLISGDPEVLPLLIRGVSTRLDVATRETRLQGMRVGEAVATLS
GQELRFDELDAERREREEGDPPG
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mRNA from alignment at F-distichus_contig100621:9..227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100621.55.1 ID=mRNA_F-distichus_contig100621.55.1|Name=mRNA_F-distichus_contig100621.55.1|organism=Fucus distichus monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at F-distichus_contig100621:9..227+ (Fucus distichus monoicous)
AGTGGCGGGATAGGCGGCAAATATCTCATCTCCGGTGACCCAGAGGTCCT
ACCTCTTTTGATTCGGGGCGTGAGCACGCGACTCGACGTGGCGACGAGAG
AGACAAGGCTTCAGGGAATGCGCGTCGGGGAGGCGGTGGCCACGCTGTCG
GGGCAGGAGCTGCGCTTCGACGAGCTCGACGCCGAGAGGAGAGAGCGGGA
AGAGGGGGACCCTCCAGGC
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Coding sequence (CDS) from alignment at F-distichus_contig100621:9..227+

>mRNA_F-distichus_contig100621.55.1 ID=mRNA_F-distichus_contig100621.55.1|Name=mRNA_F-distichus_contig100621.55.1|organism=Fucus distichus monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at F-distichus_contig100621:9..227+ (Fucus distichus monoicous)
AGTGGCGGGATAGGCGGCAAATATCTCATCTCCGGTGACCCAGAGGTCCT
ACCTCTTTTGATTCGGGGCGTGAGCACGCGACTCGACGTGGCGACGAGAG
AGACAAGGCTTCAGGGAATGCGCGTCGGGGAGGCGGTGGCCACGCTGTCG
GGGCAGGAGCTGCGCTTCGACGAGCTCGACGCCGAGAGGAGAGAGCGGGA
AGAGGGGGACCCTCCAGGCAGTGGCGGGATAGGCGGCAAATATCTCATCT
CCGGTGACCCAGAGGTCCTACCTCTTTTGATTCGGGGCGTGAGCACGCGA
CTCGACGTGGCGACGAGAGAGACAAGGCTTCAGGGAATGCGCGTCGGGGA
GGCGGTGGCCACGCTGTCGGGGCAGGAGCTGCGCTTCGACGAGCTCGACG
CCGAGAGGAGAGAGCGGGAAGAGGGGGACCCTCCAGGC
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