mRNA_F-distichus_contig100570.52.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100570.52.1
Unique NamemRNA_F-distichus_contig100570.52.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: D8LB56_ECTSI (Glyoxalase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB56_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.300e-65
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSKF 348
            GAWSKTMIGYGPEE+ FALELTYNYGID YK+GDDLQYICLQ DVEA KAKAEAEGY+CAA  GGG+LISGPDGYKYKAIP IEGRKERFVSVG +VSDL +STAYWCDLLGMSKF
Sbjct:   56 GAWSKTMIGYGPEEEGFALELTYNYGIDGYKNGDDLQYICLQLDVEATKAKAEAEGYACAAASGGGVLISGPDGYKYKAIPSIEGRKERFVSVGLKVSDLPASTAYWCDLLGMSKF 171          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A7S3UZB1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZB1_HETAK)

HSP 1 Score: 142 bits (359), Expect = 1.850e-38
Identity = 73/116 (62.93%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGG--ILISGPDGYKYKAIPP-IEGRKERFVSVGFRVSDLASSTAYWCDLLGM 339
            GAWSKTMIG GPEEQ+FALELTYNYGID+Y++GDDLQY+CL  D+   +AKA   GY  A  GG G  +LI GPDGY+Y  +PP  EGR+E +V VG +V+DL SS  YWC LLG+
Sbjct:  299 GAWSKTMIGRGPEEQHFALELTYNYGIDAYRAGDDLQYLCLSGDLAEYEAKARRFGYP-AEFGGKGETLLIEGPDGYRYLVVPPGAEGREEAWVCVGLKVADLDSSLRYWCGLLGL 413          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A7S3UXG7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXG7_HETAK)

HSP 1 Score: 142 bits (359), Expect = 1.580e-37
Identity = 73/116 (62.93%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGG--ILISGPDGYKYKAIPP-IEGRKERFVSVGFRVSDLASSTAYWCDLLGM 339
            GAWSKTMIG GPEEQ+FALELTYNYGID+Y++GDDLQY+CL  D+   +AKA   GY  A  GG G  +LI GPDGY+Y  +PP  EGR+E +V VG +V+DL SS  YWC LLG+
Sbjct:  470 GAWSKTMIGRGPEEQHFALELTYNYGIDAYRAGDDLQYLCLSGDLAEYEAKARRFGYP-AEFGGKGETLLIEGPDGYRYLVVPPGAEGREEAWVCVGLKVADLDSSLRYWCGLLGL 584          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A7S2V7L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7L4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.360e-36
Identity = 71/117 (60.68%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQT-DVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSKF 348
            GAWSKTMIGYGPE++NFALELTYNYGIDSY+ G+DLQYI L   D++A   KAE    +C  V   G LI GPD YKYK I    GR E F  VG RV+DLA +  YW +LLG+ KF
Sbjct:   50 GAWSKTMIGYGPEKENFALELTYNYGIDSYEFGNDLQYIALGVEDIKAVLNKAE----TCGFVVTEGNLIHGPDSYKYKIIQQEAGRTESFAVVGLRVADLAKAEDYWVNLLGLQKF 162          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A835YGN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.430e-35
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSK 345
            GAWSKTM+GYGPE  NFALELTYNYGIDSY SGDDLQYI + + +   +AK    GY+     G    ++GPDGY+++ +P I+GR ERFVSV  RVSD  +S  YWC LLG+++
Sbjct:   59 GAWSKTMVGYGPERDNFALELTYNYGIDSYASGDDLQYIAVASPMALERAKLF--GYAVDEASG---TVTGPDGYRFRIVPEIQGRAERFVSVAIRVSDANASEKYWCGLLGLTQ 168          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A7S2V5K7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5K7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.810e-33
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSKF 348
            GAWSKTMIGYGPE+++FALELTYNYGIDSY+ G+DLQYI L     AA  +A+A GY C   GG  I + GPD Y+Y+ + P E     F +VG RV+DLA +  YW +LLG+ KF
Sbjct:  115 GAWSKTMIGYGPEKEHFALELTYNYGIDSYEFGNDLQYIALAAPAGAAD-RAKALGYECVEEGGS-ITVVGPDSYRYRLLEPQEA--PAFGAVGVRVADLAKAEDYWVNLLGLQKF 226          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A7S2V686_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V686_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.350e-31
Identity = 66/115 (57.39%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSK 345
            GAWSKTMIGYGPE +NFALELTYNYGID Y+ G+DLQYI L       +AKA        A  G G+ ISGPD YKYK +P   G  ERFV+VG RV  LA +  Y+ D+LGM +
Sbjct:  115 GAWSKTMIGYGPERENFALELTYNYGIDGYEFGNDLQYIALACPYAFVRAKA----LGFEADEGSGV-ISGPDNYKYKIVPECAGVAERFVAVGLRVKSLAKAKEYYGDILGMKE 224          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A0M0J531_9EUKA (Glyoxalase domain-containing protein 4-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J531_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 4.840e-31
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSKFP 351
            GAWSKTM+G G E  NF  ELTYNYGIDSY SG+D+QY  +   +  A  +A+A GY     GG  + I GPD ++YK + P  GR ER ++VG R +DLA++  YWCD+LGM+ FP
Sbjct:   62 GAWSKTMVGLGNENDNFVFELTYNYGIDSYASGNDVQYFAVA--MPEAVPRAQAFGYGVEYAGGMPV-IKGPDNFRYKIVEPSAGRAERILAVGLRSTDLAATKQYWCDVLGMTVFP 175          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A7S0XQV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XQV7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.110e-28
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSK 345
            GAWSKTM+G+GPEE NF  ELTYNYGIDSY SGDD+Q  C       A+ +A + GY      G  + I GPD +KYK +  +  R ERF++V  + SDLA+S  YWC +LGMSK
Sbjct:   64 GAWSKTMVGWGPEETNFVFELTYNYGIDSYASGDDVQ--CFVLACPEARDRAASLGYEVGYERGIAV-IHGPDNFKYKIVDALP-RAERFLAVVLKSSDLAASEKYWCGVLGMSK 174          
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Match: A0A7S2ELB3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ELB3_TRICV)

HSP 1 Score: 112 bits (281), Expect = 3.670e-27
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 GAWSKTMIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEGYSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAYWCDLLGMSKFP 351
            GAWSKTM+G G E+ NF  ELTYNYGIDSY+SG+D+ +  L   +  A  +A A GY      G  I++ GPDGY+Y  + P  GR ERF  V  R SDL  +  YWC +LGM++FP
Sbjct:  126 GAWSKTMVGLGDEKDNFVFELTYNYGIDSYRSGNDVVHFALA--MPEAVPRAVALGYEVKYERGCPIVV-GPDGYRYAIVDPAAGRAERFWGVCLRSSDLDKTREYWCGVLGMTEFP 239          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100570.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB56_ECTSI1.300e-6587.07Glyoxalase domain containing protein n=2 Tax=Ectoc... [more]
A0A7S3UZB1_HETAK1.850e-3862.93Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UXG7_HETAK1.580e-3762.93Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V7L4_9STRA2.360e-3660.68Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YGN6_9STRA4.430e-3557.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V5K7_9STRA3.810e-3356.90Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2V686_9STRA1.350e-3157.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0M0J531_9EUKA4.840e-3152.14Glyoxalase domain-containing protein 4-like protei... [more]
A0A7S0XQV7_9STRA1.110e-2853.04Hypothetical protein (Fragment) n=1 Tax=Chrysocyst... [more]
A0A7S2ELB3_TRICV3.670e-2750.43Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100570contigF-distichus_contig100570:933..1995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue1.6e-49
Seed eggNOG ortholog2880.D8LB56
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,COG0526@1,KOG0907@2759,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons2
Model size354
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100570.52.1prot_F-distichus_contig100570.52.1Fucus distichus monoicouspolypeptideF-distichus_contig100570 933..1977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.8343382-CDS-F-distichus_contig100570:932..11201622928924.8343382-CDS-F-distichus_contig100570:932..1120Fucus distichus monoicousCDSF-distichus_contig100570 933..1120 -
1690885064.531266-CDS-F-distichus_contig100570:932..11201690885064.531266-CDS-F-distichus_contig100570:932..1120Fucus distichus monoicousCDSF-distichus_contig100570 933..1120 -
1622928924.8447778-CDS-F-distichus_contig100570:1829..19771622928924.8447778-CDS-F-distichus_contig100570:1829..1977Fucus distichus monoicousCDSF-distichus_contig100570 1830..1977 -
1690885064.5500443-CDS-F-distichus_contig100570:1829..19771690885064.5500443-CDS-F-distichus_contig100570:1829..1977Fucus distichus monoicousCDSF-distichus_contig100570 1830..1977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.8574853-UTR-F-distichus_contig100570:1977..19951622928924.8574853-UTR-F-distichus_contig100570:1977..1995Fucus distichus monoicousUTRF-distichus_contig100570 1978..1995 -
1690885064.5698872-UTR-F-distichus_contig100570:1977..19951690885064.5698872-UTR-F-distichus_contig100570:1977..1995Fucus distichus monoicousUTRF-distichus_contig100570 1978..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100570.52.1

>prot_F-distichus_contig100570.52.1 ID=prot_F-distichus_contig100570.52.1|Name=mRNA_F-distichus_contig100570.52.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp
MIGYGPEEQNFALELTYNYGIDSYKSGDDLQYICLQTDVEAAKAKAEAEG
YSCAAVGGGGILISGPDGYKYKAIPPIEGRKERFVSVGFRVSDLASSTAY
WCDLLGMSKFPS
back to top

mRNA from alignment at F-distichus_contig100570:933..1995-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100570.52.1 ID=mRNA_F-distichus_contig100570.52.1|Name=mRNA_F-distichus_contig100570.52.1|organism=Fucus distichus monoicous|type=mRNA|length=1063bp|location=Sequence derived from alignment at F-distichus_contig100570:933..1995- (Fucus distichus monoicous)
GGGGCGTGGTCAAAGACTATGATCGGTTACGGGCCAGAGGAGCAAAATTT TGCCCTGGAGCTTACGTACAACTACGGTATTGATAGCTATAAGAGCGGAG ACGACCTGCAGTACATCTGCCTCCAGACTGACGTCGAGGCCGCCAAGGCC AAGGCAGAGGCGGAGGGTGAGTGAGACTCTCGTTTCCCGAGAGGACTGGA GGCTGGGTGCGGGCGACGTGGCTCGATGCGCCCGATCGATGTCCGGTTAG AATGGCCGAATTCCGATTGTGCCGACACGTGCTCCCTTAATAACGTCCTT TCTTCCCTTGTTCAATCTTTCCGTGGGGGAAAGGGTGGGGTGGGGGGGGG TAATGCGTTTGGGTGGGATGAGATTGGTGTGTGTCCATTTCTGACATCTG CCATGGAAATCGGCGCTCTTTTTAAACTGTAGTGGTTAAGAGGTTCTGTC TGTCGTTGTGATGAGCTGTCAACCGTCGACCTTTTGGCGGCGGTGTGTGT GTGTGTCAATCACTACATCTCAAAACACAACCACACAATCTCAATCTCAA CATCTCAAAACCATACTTTCTATTTATACGTGAGCTCATAACACGTGCGG AGTGTCGTGTGCGTCGCCAAAGTTATAGCTTGACGATGATAGGAACTCCC CTTTTACAGTACTACAAGTACACAGGTTTTTGATCTGGTTTGGTTCCGTC TATCTTGTGACCACGGCTGGATTCGTAGCGGATCAGTTAATGTGAGATAA ACAAACAAACAAACAAAACCTCTAGTCCACCCACTTTTTACACTACACGC TACTAACTGTGCACTTTACACTCTACACTGCATACTTGGACGCTATTGCA CTTTACACTTTACACCACAAACCAGGGTACTCGTGCGCGGCGGTGGGTGG TGGCGGCATTCTCATCTCCGGCCCCGACGGCTACAAGTACAAGGCCATCC CGCCGATCGAGGGCCGGAAAGAGCGGTTCGTCTCGGTCGGGTTTAGGGTC TCGGACCTCGCCTCGTCCACCGCGTACTGGTGCGACCTCCTCGGCATGTC GAAATTCCCTTCG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig100570:933..1995-

>mRNA_F-distichus_contig100570.52.1 ID=mRNA_F-distichus_contig100570.52.1|Name=mRNA_F-distichus_contig100570.52.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig100570:933..1995- (Fucus distichus monoicous)
ATGATCGGTTACGGGCCAGAGGAGCAAAATTTTGCCCTGGAGCTTACGTA
CAACTACGGTATTGATAGCTATAAGAGCGGAGACGACCTGCAGTACATCT
GCCTCCAGACTGACGTCGAGGCCGCCAAGGCCAAGGCAGAGGCGGAGGAT
GATCGGTTACGGGCCAGAGGAGCAAAATTTTGCCCTGGAGCTTACGTACA
ACTACGGTATTGATAGCTATAAGAGCGGAGACGACCTGCAGTACATCTGC
CTCCAGACTGACGTCGAGGCCGCCAAGGCCAAGGCAGAGGCGGAGGGGTA
CTCGTGCGCGGCGGTGGGTGGTGGCGGCATTCTCATCTCCGGCCCCGACG
GCTACAAGTACAAGGCCATCCCGCCGATCGAGGGCCGGAAAGAGCGGTTC
GTCTCGGTCGGGTTTAGGGTCTCGGACCTCGCCTCGTCCACCGCGTACTG
GTGCGACCTCCTCGGCATGTCGAAATTCCCTTCGGGTACTCGTGCGCGGC
GGTGGGTGGTGGCGGCATTCTCATCTCCGGCCCCGACGGCTACAAGTACA
AGGCCATCCCGCCGATCGAGGGCCGGAAAGAGCGGTTCGTCTCGGTCGGG
TTTAGGGTCTCGGACCTCGCCTCGTCCACCGCGTACTGGTGCGACCTCCT
CGGCATGTCGAAATTCCCTTCG
back to top