mRNA_F-distichus_contig100568.51.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100568.51.1
Unique NamemRNA_F-distichus_contig100568.51.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100568.51.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.060e-20
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 VRPNNTTFVSVALSLGRAGKPLECLGVLDEMRERGTPPDAICRQTVLRVLDRWDRAEEAIELF 189
            VRPNNTT+V VA+SLGR+ +PLECL +L  M  +GTPPDAIC   VL+VLDRWD AEEA  LF
Sbjct:  547 VRPNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLLF 609
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100568.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI4.060e-2068.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100568contigF-distichus_contig100568:615..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D7FNK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.8018568-CDS-F-distichus_contig100568:614..8031622928924.8018568-CDS-F-distichus_contig100568:614..803Fucus distichus monoicousCDSF-distichus_contig100568 615..803 +
1690885064.4403458-CDS-F-distichus_contig100568:614..8031690885064.4403458-CDS-F-distichus_contig100568:614..803Fucus distichus monoicousCDSF-distichus_contig100568 615..803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100568.51.1prot_F-distichus_contig100568.51.1Fucus distichus monoicouspolypeptideF-distichus_contig100568 615..803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100568.51.1

>prot_F-distichus_contig100568.51.1 ID=prot_F-distichus_contig100568.51.1|Name=mRNA_F-distichus_contig100568.51.1|organism=Fucus distichus monoicous|type=polypeptide|length=63bp
VRPNNTTFVSVALSLGRAGKPLECLGVLDEMRERGTPPDAICRQTVLRVL
DRWDRAEEAIELF
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mRNA from alignment at F-distichus_contig100568:615..803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100568.51.1 ID=mRNA_F-distichus_contig100568.51.1|Name=mRNA_F-distichus_contig100568.51.1|organism=Fucus distichus monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at F-distichus_contig100568:615..803+ (Fucus distichus monoicous)
GTGCGCCCCAATAACACGACGTTTGTCAGCGTGGCACTGAGTCTTGGCCG
TGCAGGGAAGCCCTTGGAATGCCTCGGAGTGCTGGACGAGATGCGAGAAA
GAGGGACTCCACCTGACGCGATCTGCCGCCAGACGGTGCTGAGGGTGCTG
GACAGATGGGATCGCGCGGAAGAGGCGATCGAGCTGTTC
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Coding sequence (CDS) from alignment at F-distichus_contig100568:615..803+

>mRNA_F-distichus_contig100568.51.1 ID=mRNA_F-distichus_contig100568.51.1|Name=mRNA_F-distichus_contig100568.51.1|organism=Fucus distichus monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at F-distichus_contig100568:615..803+ (Fucus distichus monoicous)
GTGCGCCCCAATAACACGACGTTTGTCAGCGTGGCACTGAGTCTTGGCCG
TGCAGGGAAGCCCTTGGAATGCCTCGGAGTGCTGGACGAGATGCGAGAAA
GAGGGACTCCACCTGACGCGATCTGCCGCCAGACGGTGCTGAGGGTGCTG
GACAGATGGGATCGCGCGGAAGAGGCGATCGAGCTGTTCGTGCGCCCCAA
TAACACGACGTTTGTCAGCGTGGCACTGAGTCTTGGCCGTGCAGGGAAGC
CCTTGGAATGCCTCGGAGTGCTGGACGAGATGCGAGAAAGAGGGACTCCA
CCTGACGCGATCTGCCGCCAGACGGTGCTGAGGGTGCTGGACAGATGGGA
TCGCGCGGAAGAGGCGATCGAGCTGTTC
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