mRNA_F-distichus_contig100545.50.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100545.50.1
Unique NamemRNA_F-distichus_contig100545.50.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100545.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100545contigF-distichus_contig100545:548..973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.76199-CDS-F-distichus_contig100545:547..9731622928924.76199-CDS-F-distichus_contig100545:547..973Fucus distichus monoicousCDSF-distichus_contig100545 548..973 +
1690885064.4240737-CDS-F-distichus_contig100545:547..9731690885064.4240737-CDS-F-distichus_contig100545:547..973Fucus distichus monoicousCDSF-distichus_contig100545 548..973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100545.50.1prot_F-distichus_contig100545.50.1Fucus distichus monoicouspolypeptideF-distichus_contig100545 548..973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100545.50.1

>prot_F-distichus_contig100545.50.1 ID=prot_F-distichus_contig100545.50.1|Name=mRNA_F-distichus_contig100545.50.1|organism=Fucus distichus monoicous|type=polypeptide|length=142bp
MPLGLSSKALGWGHDLLANTAIKYFTHNQAVSGRKRKSNFCVEEDADNME
SRIVSVGQEWAEASSLHEIAEAVHNWAAVRFQCAPWDWSGLLLLRVLHET
SYFSTASDGEGSQRALAEKFIDEFLSKNRRNLMQTRPPMDYK
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mRNA from alignment at F-distichus_contig100545:548..973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100545.50.1 ID=mRNA_F-distichus_contig100545.50.1|Name=mRNA_F-distichus_contig100545.50.1|organism=Fucus distichus monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at F-distichus_contig100545:548..973+ (Fucus distichus monoicous)
ATGCCCCTAGGACTGAGCTCAAAAGCTCTTGGCTGGGGGCATGATTTATT
GGCAAACACGGCCATTAAATATTTTACCCATAATCAGGCCGTGTCAGGGA
GGAAGAGGAAGAGCAATTTTTGCGTGGAAGAAGATGCTGACAACATGGAG
TCGCGCATCGTGTCTGTTGGGCAGGAGTGGGCAGAGGCCAGTTCCCTGCA
CGAGATCGCGGAGGCCGTCCACAACTGGGCGGCCGTCCGCTTTCAGTGCG
CTCCCTGGGACTGGTCGGGACTCCTGCTCTTGCGAGTTTTGCATGAGACT
AGCTACTTCTCAACAGCTAGTGATGGGGAGGGGTCTCAGAGAGCCCTCGC
GGAGAAATTCATAGATGAATTTCTCAGCAAGAACAGGAGGAACCTCATGC
AGACAAGGCCACCCATGGACTACAAA
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Coding sequence (CDS) from alignment at F-distichus_contig100545:548..973+

>mRNA_F-distichus_contig100545.50.1 ID=mRNA_F-distichus_contig100545.50.1|Name=mRNA_F-distichus_contig100545.50.1|organism=Fucus distichus monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at F-distichus_contig100545:548..973+ (Fucus distichus monoicous)
ATGCCCCTAGGACTGAGCTCAAAAGCTCTTGGCTGGGGGCATGATTTATT
GGCAAACACGGCCATTAAATATTTTACCCATAATCAGGCCGTGTCAGGGA
GGAAGAGGAAGAGCAATTTTTGCGTGGAAGAAGATGCTGACAACATGGAG
TCGCGCATCGTGTCTGTTGGGCAGGAGTGGGCAGAGGCCAGTTCCCTGCA
CGAGATCGCGGAGGCCGTCCACAACTGGGCGGCCGTCCGCTTTCAGTGCG
CTCCCTGGGACTGGTCGGGACTCCTGCTCTTGCGAGTTTTGCATGAGACT
AGCTACTTCTCAACAGCTAGTGATGGGGAGGGGTCTCAGAGAGCCCTCGC
GGAGAAATTCATAGATGAATTTCTCAGCAAGAACAGGAGGAACCTCATGC
AGACAAGGCCACCCATGGACTACAAAATGCCCCTAGGACTGAGCTCAAAA
GCTCTTGGCTGGGGGCATGATTTATTGGCAAACACGGCCATTAAATATTT
TACCCATAATCAGGCCGTGTCAGGGAGGAAGAGGAAGAGCAATTTTTGCG
TGGAAGAAGATGCTGACAACATGGAGTCGCGCATCGTGTCTGTTGGGCAG
GAGTGGGCAGAGGCCAGTTCCCTGCACGAGATCGCGGAGGCCGTCCACAA
CTGGGCGGCCGTCCGCTTTCAGTGCGCTCCCTGGGACTGGTCGGGACTCC
TGCTCTTGCGAGTTTTGCATGAGACTAGCTACTTCTCAACAGCTAGTGAT
GGGGAGGGGTCTCAGAGAGCCCTCGCGGAGAAATTCATAGATGAATTTCT
CAGCAAGAACAGGAGGAACCTCATGCAGACAAGGCCACCCATGGACTACA
AA
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