mRNA_F-distichus_contig100511.49.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100511.49.1
Unique NamemRNA_F-distichus_contig100511.49.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: D8LF61_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF61_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.920e-32
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 KFNPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            +FNP+DYI+GD+DGGDNETRRRGACDLLR+MCKHYEE TTRICS FV GMYQEY  N  ANWRSKDAA+
Sbjct:  342 EFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAAL 410
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: A0A6H5L714_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L714_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.660e-32
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 KFNPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAA 204
            +FNP+DYI+GD+ GGDNETRRRGACDLLR+MCKHYEE TTRICS FV GMYQEY  N  ANWRSKDAA
Sbjct:  377 EFNPDDYISGDMGGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAA 444
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: A0A2R5GFY4_9STRA (Exportin-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFY4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.180e-18
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    7 NPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            NP +YI  DI+G D+ETRRR ACDL+RAMC+H++++TT++C T V  +  EY +NPS NW   D A+
Sbjct:  358 NPIEYIRRDIEGSDSETRRRMACDLVRAMCRHFDQETTKLCETVVTALVNEYRSNPSQNWYQMDTAI 424
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: X1ZAF6_CAPTE (Exportin-2 n=1 Tax=Capitella teleta TaxID=283909 RepID=X1ZAF6_CAPTE)

HSP 1 Score: 85.5 bits (210), Expect = 7.650e-18
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    7 NPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            NPE+YI  DI+G D +TRRR ACDL+RA+ KH+E+      S +V  M QEYG NP+ NW+SKDAAV
Sbjct:  366 NPEEYIRRDIEGSDIDTRRRAACDLVRALSKHFEDLVISTFSMYVQFMLQEYGKNPAQNWKSKDAAV 432
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: A0A7M5XE06_9CNID (Exportin-2 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XE06_9CNID)

HSP 1 Score: 84.3 bits (207), Expect = 1.950e-17
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    7 NPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            NPE+YI  DI+G D +TRRR ACDL+R +CK YE++ T I S +V  +  +Y +NP +NW++KDA +
Sbjct:  365 NPEEYIRKDIEGSDIDTRRRSACDLVRGLCKFYEQEVTNIFSAYVNQLLSQYQSNPQSNWKAKDACI 431
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: A0A7S2WRA8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRA8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.640e-17
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    7 NPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            NP +YI  DI+G D++TRRR ACDL+R +C+H+E+QTT  C  ++  +  EY ANP+ NW   D A+
Sbjct:  359 NPMEYIRRDIEGSDSDTRRRVACDLVRGLCRHFEDQTTANCEQYLAKLVSEYSANPAGNWHQMDTAI 425
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: A0A7S3ZKT0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKT0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.970e-17
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   10 PEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            P +YI+ D +  D ETRRRGACDL+ A+CKH+   TTR+C  ++  M Q+Y  +PS +WRSKD A+
Sbjct:  370 PLEYISRDFESADAETRRRGACDLIAALCKHHNATTTRVCVDYIAAMLQKYAESPSEHWRSKDTAL 435
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: A0A7S3UXW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UXW9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.590e-17
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    7 NPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            NP DYI GD++G D E+RR+ ACDL+R+MCK +E   T+IC  F+  M  +Y  +P   WR+KDAAV
Sbjct:   60 NPLDYIRGDMEGSDKESRRKTACDLIRSMCKLFEADVTQICLGFMKQMLDQYQKDPLNQWRAKDAAV 126
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BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: A0A4Y2L9X3_ARAVE (Exportin-2 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2L9X3_ARAVE)

HSP 1 Score: 82.4 bits (202), Expect = 8.780e-17
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    7 NPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            NPE+YI  DI+G D +TRRR ACDL++A+ +H+E   T+I S +V  M Q Y  +P+ +W+SKDAA+
Sbjct:  365 NPEEYIRRDIEGSDMDTRRRAACDLVKALARHFEANITQIFSNYVNAMLQNYAKDPNTHWKSKDAAI 431
[Close]
BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Match: UPI0015A95EDF (exportin-2-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A95EDF)

HSP 1 Score: 80.9 bits (198), Expect = 3.090e-16
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    7 NPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGMYQEYGANPSANWRSKDAAV 207
            NPE+YI  DI+G D +TRRR ACDL++A+ KH+E + T + S +V  M Q Y  +P+ +W+SKDAA+
Sbjct:  366 NPEEYIRRDIEGSDVDTRRRAACDLVKALAKHFEAKITSVFSAYVNAMLQNYIKDPNTHWKSKDAAI 432
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100511.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF61_ECTSI1.920e-3281.16Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5L714_9PHAE6.660e-3280.88Importin N-terminal domain-containing protein n=1 ... [more]
A0A2R5GFY4_9STRA1.180e-1853.73Exportin-2 n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
X1ZAF6_CAPTE7.650e-1858.21Exportin-2 n=1 Tax=Capitella teleta TaxID=283909 R... [more]
A0A7M5XE06_9CNID1.950e-1750.75Exportin-2 n=1 Tax=Clytia hemisphaerica TaxID=2526... [more]
A0A7S2WRA8_9STRA3.640e-1749.25Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S3ZKT0_9STRA4.970e-1751.52Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3UXW9_9STRA8.590e-1752.24Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A4Y2L9X3_ARAVE8.780e-1750.75Exportin-2 n=1 Tax=Araneus ventricosus TaxID=18280... [more]
UPI0015A95EDF3.090e-1650.75exportin-2-like n=1 Tax=Stegodyphus dumicola TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100511contigF-distichus_contig100511:581..787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D8LF61
Preferred nameCSE1L
KEGG koko:K18423
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0005911,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0007589,GO:0008104,GO:0008150,GO:0008219,GO:0008283,GO:0009506,GO:0009987,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0017076,GO:0019001,GO:0030054,GO:0031224,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0050878,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5657@1,KOG1992@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.7231824-CDS-F-distichus_contig100511:580..7871622928924.7231824-CDS-F-distichus_contig100511:580..787Fucus distichus monoicousCDSF-distichus_contig100511 581..787 +
1690885064.308299-CDS-F-distichus_contig100511:580..7871690885064.308299-CDS-F-distichus_contig100511:580..787Fucus distichus monoicousCDSF-distichus_contig100511 581..787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100511.49.1prot_F-distichus_contig100511.49.1Fucus distichus monoicouspolypeptideF-distichus_contig100511 581..787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100511.49.1

>prot_F-distichus_contig100511.49.1 ID=prot_F-distichus_contig100511.49.1|Name=mRNA_F-distichus_contig100511.49.1|organism=Fucus distichus monoicous|type=polypeptide|length=69bp
KFNPEDYINGDIDGGDNETRRRGACDLLRAMCKHYEEQTTRICSTFVGGM
YQEYGANPSANWRSKDAAV
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mRNA from alignment at F-distichus_contig100511:581..787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100511.49.1 ID=mRNA_F-distichus_contig100511.49.1|Name=mRNA_F-distichus_contig100511.49.1|organism=Fucus distichus monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at F-distichus_contig100511:581..787+ (Fucus distichus monoicous)
AAGTTCAACCCTGAGGACTACATCAACGGGGACATAGACGGTGGGGACAA
CGAGACGCGTCGAAGGGGGGCGTGCGATCTCCTCAGGGCTATGTGCAAGC
ATTACGAGGAGCAAACCACGCGCATCTGCTCCACGTTCGTGGGCGGGATG
TATCAGGAATATGGAGCTAATCCTTCTGCCAACTGGCGCTCCAAGGATGC
TGCGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig100511:581..787+

>mRNA_F-distichus_contig100511.49.1 ID=mRNA_F-distichus_contig100511.49.1|Name=mRNA_F-distichus_contig100511.49.1|organism=Fucus distichus monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at F-distichus_contig100511:581..787+ (Fucus distichus monoicous)
AAGTTCAACCCTGAGGACTACATCAACGGGGACATAGACGGTGGGGACAA
CGAGACGCGTCGAAGGGGGGCGTGCGATCTCCTCAGGGCTATGTGCAAGC
ATTACGAGGAGCAAACCACGCGCATCTGCTCCACGTTCGTGGGCGGGATG
TATCAGGAATATGGAGCTAATCCTTCTGCCAACTGGCGCTCCAAGGATGC
TGCGGTGAAGTTCAACCCTGAGGACTACATCAACGGGGACATAGACGGTG
GGGACAACGAGACGCGTCGAAGGGGGGCGTGCGATCTCCTCAGGGCTATG
TGCAAGCATTACGAGGAGCAAACCACGCGCATCTGCTCCACGTTCGTGGG
CGGGATGTATCAGGAATATGGAGCTAATCCTTCTGCCAACTGGCGCTCCA
AGGATGCTGCGGTG
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