mRNA_F-distichus_contig100450.46.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100450.46.1
Unique NamemRNA_F-distichus_contig100450.46.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100450.46.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.820e-13
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   43 YVDSNQFLFVALVSRSWRRVWGQRPALTRFVTSQSSASQLAESFESGLPRDR-SVCRQAARVGNLGALQWA 252
            +V   QFLF A VSR+WR  WG RPA+T +VT  SS SQL  SFE GLPRDR  +C   AR+GNL  L+ A
Sbjct:   70 FVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSA 140
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BLAST of mRNA_F-distichus_contig100450.46.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.160e-11
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 MNSNLNIISFLLHVYVDSNQFLFVALVSRSWRRVWGQRPALTRFVTSQSSASQLAESFESGLPRDRSVCRQAARVGNLGALQWA 252
            + +N+ ++S+L   +VD NQ LF A VSR WR VWG+RP +T+ +T+ +S  QL+ SFE GL R  +VC   A +G L  LQ A
Sbjct:   21 VTANVYLLSYLAE-FVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRA 103
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BLAST of mRNA_F-distichus_contig100450.46.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.220e-11
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   43 YVDSNQFLFVALVSRSWRRVWGQRPALTRFVTSQSSASQLAESFESGLPRDRSVCRQAARVGNLGALQWA 252
            +VD NQ+LF A VSR WR VWG+RP +T+ +T+ +S SQL+ SFE GL R  +VC   A +G L  L+ A
Sbjct:   18 FVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRA 87
[Close]
BLAST of mRNA_F-distichus_contig100450.46.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-11
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   43 YVDSNQFLFVALVSRSWRRVWGQRPALTRFVTSQSSASQLAESFESGLPRDRSVCRQAARVGNLGALQWA 252
            +VD NQ+LF A VSR WR VWG+RP +T+ +T+ +S  QL+ SFE GL R  +VC   A +G L  L+ A
Sbjct:   16 FVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRA 85
[Close]
BLAST of mRNA_F-distichus_contig100450.46.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.650e-7
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   43 YVDSNQFLFVALVSRSWRRVWGQRPALTRFVTSQSSASQLAESFESGLP---RDRSVCRQAARVGNLGALQWA 252
            +VD +Q+LF+A VS+++RR WG R  +TR V + +S  QL    E GLP   R  ++C  AAR G L  L+ A
Sbjct:    7 FVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLA 79
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100450.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPZ6_9PHAE7.820e-1357.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0K8_9PHAE1.160e-1146.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.220e-1151.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE1.430e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G822_ECTSI4.650e-743.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100450contigF-distichus_contig100450:1018..1959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size942
Cds size942
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.4870086-CDS-F-distichus_contig100450:1017..19591622928924.4870086-CDS-F-distichus_contig100450:1017..1959Fucus distichus monoicousCDSF-distichus_contig100450 1018..1959 +
1690885063.8596697-CDS-F-distichus_contig100450:1017..19591690885063.8596697-CDS-F-distichus_contig100450:1017..1959Fucus distichus monoicousCDSF-distichus_contig100450 1018..1959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100450.46.1prot_F-distichus_contig100450.46.1Fucus distichus monoicouspolypeptideF-distichus_contig100450 1018..1959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100450.46.1

>prot_F-distichus_contig100450.46.1 ID=prot_F-distichus_contig100450.46.1|Name=mRNA_F-distichus_contig100450.46.1|organism=Fucus distichus monoicous|type=polypeptide|length=314bp
MNSNLNIISFLLHVYVDSNQFLFVALVSRSWRRVWGQRPALTRFVTSQSS
ASQLAESFESGLPRDRSVCRQAARVGNLGALQWALESGCPWNEATCAGAA
AGGHLEVLQWARDRGCPWDSMTCAEAARGGHLHILQWARANGCDWSVHTC
SQAAAGGYLEILQWARAHRCPWDLGTCREAARGGHLEVLRWARANGCHWG
SDTCRGAAQNGHLNVLKWARANDCPWNRWTCNGAAAGGHLHVLQWAHSNG
CPWDSWTCAMAAGEGRLDVLRWARAHGCPWDGWTRALAKKQGHNHVLEWA
IANGCPVDMEYTE*
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mRNA from alignment at F-distichus_contig100450:1018..1959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100450.46.1 ID=mRNA_F-distichus_contig100450.46.1|Name=mRNA_F-distichus_contig100450.46.1|organism=Fucus distichus monoicous|type=mRNA|length=942bp|location=Sequence derived from alignment at F-distichus_contig100450:1018..1959+ (Fucus distichus monoicous)
ATGAACAGCAATCTGAACATCATCTCGTTCTTACTTCACGTTTACGTGGA
CAGCAACCAGTTCCTTTTCGTCGCCCTCGTATCAAGATCCTGGAGGAGAG
TGTGGGGACAACGACCGGCATTAACGCGCTTCGTCACCTCTCAATCGTCG
GCATCCCAGCTCGCCGAGAGCTTCGAGAGTGGGTTGCCTCGGGATCGATC
GGTTTGCCGCCAAGCCGCTCGGGTTGGAAACCTTGGAGCCCTTCAATGGG
CACTTGAGAGTGGCTGTCCTTGGAATGAAGCAACGTGTGCTGGAGCGGCC
GCAGGAGGGCACCTGGAAGTCCTTCAGTGGGCCAGAGACAGAGGCTGTCC
GTGGGACTCAATGACTTGTGCTGAAGCTGCAAGAGGAGGGCATCTGCACA
TACTCCAATGGGCGCGGGCAAATGGCTGCGATTGGTCCGTTCACACCTGC
AGTCAGGCAGCTGCCGGAGGGTACCTGGAGATTCTCCAATGGGCACGGGC
GCACCGATGTCCCTGGGATCTTGGTACTTGCAGGGAGGCTGCCCGTGGGG
GGCACTTGGAGGTTCTCAGGTGGGCGCGGGCCAATGGATGTCACTGGGGT
AGTGATACGTGCAGAGGAGCAGCCCAAAATGGGCACCTTAATGTTCTAAA
GTGGGCACGGGCTAATGACTGCCCGTGGAATAGATGGACATGCAACGGGG
CTGCAGCAGGTGGGCATCTACATGTGCTTCAGTGGGCGCACTCGAATGGC
TGCCCGTGGGACTCATGGACGTGCGCTATGGCCGCCGGGGAAGGGCGCCT
CGATGTCCTCCGCTGGGCAAGAGCGCATGGGTGTCCTTGGGACGGTTGGA
CGCGCGCCCTAGCCAAGAAGCAGGGGCACAACCATGTGCTCGAATGGGCA
ATTGCCAATGGATGCCCGGTGGATATGGAATATACCGAGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig100450:1018..1959+

>mRNA_F-distichus_contig100450.46.1 ID=mRNA_F-distichus_contig100450.46.1|Name=mRNA_F-distichus_contig100450.46.1|organism=Fucus distichus monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at F-distichus_contig100450:1018..1959+ (Fucus distichus monoicous)
ATGAACAGCAATCTGAACATCATCTCGTTCTTACTTCACGTTTACGTGGA
CAGCAACCAGTTCCTTTTCGTCGCCCTCGTATCAAGATCCTGGAGGAGAG
TGTGGGGACAACGACCGGCATTAACGCGCTTCGTCACCTCTCAATCGTCG
GCATCCCAGCTCGCCGAGAGCTTCGAGAGTGGGTTGCCTCGGGATCGATC
GGTTTGCCGCCAAGCCGCTCGGGTTGGAAACCTTGGAGCCCTTCAATGGG
CACTTGAGAGTGGCTGTCCTTGGAATGAAGCAACGTGTGCTGGAGCGGCC
GCAGGAGGGCACCTGGAAGTCCTTCAGTGGGCCAGAGACAGAGGCTGTCC
GTGGGACTCAATGACTTGTGCTGAAGCTGCAAGAGGAGGGCATCTGCACA
TACTCCAATGGGCGCGGGCAAATGGCTGCGATTGGTCCGTTCACACCTGC
AGTCAGGCAGCTGCCGGAGGGTACCTGGAGATTCTCCAATGGGCACGGGC
GCACCGATGTCCCTGGGATCTTGGTACTTGCAGGGAGGCTGCCCGTGGGG
GGCACTTGGAGGTTCTCAGGTGGGCGCGGGCCAATGGATGTCACTGGGGT
AGTGATACGTGCAGAGGAGCAGCCCAAAATGGGCACCTTAATGTTCTAAA
GTGGGCACGGGCTAATGACTGCCCGTGGAATAGATGGACATGCAACGGGG
CTGCAGCAGGTGGGCATCTACATGTGCTTCAGTGGGCGCACTCGAATGGC
TGCCCGTGGGACTCATGGACGTGCGCTATGGCCGCCGGGGAAGGGCGCCT
CGATGTCCTCCGCTGGGCAAGAGCGCATGGGTGTCCTTGGGACGGTTGGA
CGCGCGCCCTAGCCAAGAAGCAGGGGCACAACCATGTGCTCGAATGGGCA
ATTGCCAATGGATGCCCGGTGGATATGGAATATACCGAGTAGATGAACAG
CAATCTGAACATCATCTCGTTCTTACTTCACGTTTACGTGGACAGCAACC
AGTTCCTTTTCGTCGCCCTCGTATCAAGATCCTGGAGGAGAGTGTGGGGA
CAACGACCGGCATTAACGCGCTTCGTCACCTCTCAATCGTCGGCATCCCA
GCTCGCCGAGAGCTTCGAGAGTGGGTTGCCTCGGGATCGATCGGTTTGCC
GCCAAGCCGCTCGGGTTGGAAACCTTGGAGCCCTTCAATGGGCACTTGAG
AGTGGCTGTCCTTGGAATGAAGCAACGTGTGCTGGAGCGGCCGCAGGAGG
GCACCTGGAAGTCCTTCAGTGGGCCAGAGACAGAGGCTGTCCGTGGGACT
CAATGACTTGTGCTGAAGCTGCAAGAGGAGGGCATCTGCACATACTCCAA
TGGGCGCGGGCAAATGGCTGCGATTGGTCCGTTCACACCTGCAGTCAGGC
AGCTGCCGGAGGGTACCTGGAGATTCTCCAATGGGCACGGGCGCACCGAT
GTCCCTGGGATCTTGGTACTTGCAGGGAGGCTGCCCGTGGGGGGCACTTG
GAGGTTCTCAGGTGGGCGCGGGCCAATGGATGTCACTGGGGTAGTGATAC
GTGCAGAGGAGCAGCCCAAAATGGGCACCTTAATGTTCTAAAGTGGGCAC
GGGCTAATGACTGCCCGTGGAATAGATGGACATGCAACGGGGCTGCAGCA
GGTGGGCATCTACATGTGCTTCAGTGGGCGCACTCGAATGGCTGCCCGTG
GGACTCATGGACGTGCGCTATGGCCGCCGGGGAAGGGCGCCTCGATGTCC
TCCGCTGGGCAAGAGCGCATGGGTGTCCTTGGGACGGTTGGACGCGCGCC
CTAGCCAAGAAGCAGGGGCACAACCATGTGCTCGAATGGGCAATTGCCAA
TGGATGCCCGGTGGATATGGAATATACCGAGTAG
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