mRNA_F-distichus_contig100406.44.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100406.44.1
Unique NamemRNA_F-distichus_contig100406.44.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A6H5L120_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L120_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 8.820e-44
Identity = 102/166 (61.45%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    1 MGNVSTTRRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIE---SGSMMLYGSSMTLSGA-GFSSR-------GGAGSGHFG------------HXXXXXXXXXVYQTEECPICFMHYQGVNRTVCCSKPLCTECYLQVK 429
            MGNVSTTRRKS SKELEKYC+PTGLYETCPWEERVVRRWI++G VAPRYPG+DAP     S GP  E   SG   L  +S++  G  G+ S        G  G+G  G             XXXXXXXXX   TEECPICFMHY GVNRT CC+KPLCTECYLQV+
Sbjct:    1 MGNVSTTRRKSGSKELEKYCKPTGLYETCPWEERVVRRWIMDGQVAPRYPGADAP-----SFGPGKEASGSGGGGLGSASVSAGGVIGYESTVRATFGPGAVGTGRSGGVGAAXXXXXXXXXXXXXXXXXXXXTEECPICFMHYHGVNRTTCCAKPLCTECYLQVR 161          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: D8LDS6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS6_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.050e-43
Identity = 99/168 (58.93%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    1 MGNVSTTRRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIES--GSMMLYGSSMTLSGA--GFSSR-------GGAGSGHFGHXXXXXXXXXVY--------------QTEECPICFMHYQGVNRTVCCSKPLCTECYLQVK 429
            MGNVSTTRRKS SKELEKYC+PTGLYETCPW+ERVVRRWI++G VAPRYPG+DAP       GP  E+  G     GS+   +G   G+ +        G  G+G  G XXXXXXXXX                QTEECPICFMHY GVNRT CC+KPLCTECYLQV+
Sbjct:    1 MGNVSTTRRKSGSKELEKYCKPTGLYETCPWDERVVRRWIMDGQVAPRYPGADAPSF----GGPGKEASGGXXXXLGSASVSAGGVIGYETTVRATFGPGAVGTGRSGXXXXXXXXXXXXXXXXXXXXXXXXXKQTEECPICFMHYHGVNRTTCCAKPLCTECYLQVR 164          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A835Z3B9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.990e-25
Identity = 57/145 (39.31%), Postives = 72/145 (49.66%), Query Frame = 1
Query:    1 MGNV--STTRRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFMHYQGVNRTVCCSKPLCTECYLQVK 429
            MGN+  + +  K  ++ELE+YC+PTGLY +CPWEE+ VR+WILEG VAPR+P  D P           + G+                                         EECPICFM     N TVCC KPLCTECYLQ++
Sbjct:    1 MGNLPAAVSHHKGKNRELERYCKPTGLYPSCPWEEKTVRKWILEGKVAPRFPPLDNP-----------DDGA-----------------------------------------EECPICFMFCHATNTTVCCGKPLCTECYLQLR 93          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: H3GTB9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTB9_PHYRM)

HSP 1 Score: 94.7 bits (234), Expect = 2.070e-20
Identity = 56/145 (38.62%), Postives = 72/145 (49.66%), Query Frame = 1
Query:    1 MGNVSTTRRKSTS-KELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFMHYQG-VNRTVCCSKPLCTECYLQVK 429
            MGN ++ RR STS +ELEKY +PTGLY +CPWE +  RR I+E  +APR+PG +A                                       G F              T ECPICFM Y G +N + CCSKP+C+ECYLQ++
Sbjct:    1 MGNSTSKRRHSTSTRELEKYAQPTGLYPSCPWELKTARRLIVERKLAPRFPGKEAK-------------------------------------DGAF--------------TLECPICFMFYPGSLNMSSCCSKPICSECYLQIR 94          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A8K1C573_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C573_PYTOL)

HSP 1 Score: 90.9 bits (224), Expect = 5.830e-19
Identity = 52/144 (36.11%), Postives = 68/144 (47.22%), Query Frame = 1
Query:    1 MGNVSTTRRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFMHYQG-VNRTVCCSKPLCTECYLQVK 429
            MGN S  +R S S+EL+++  PTGLY +CPW+ R VRR ILE  +APR+PG D+                                                        T+ECPICFM+Y G +N   CC KP+C+ECYLQ+K
Sbjct:    1 MGN-SPPKRASISRELDRFTHPTGLYPSCPWDFRSVRRMILEKKIAPRFPGRDSK---------------------------------------------------ESCFTQECPICFMYYPGSLNTATCCKKPICSECYLQLK 92          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A6A3WZI7_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WZI7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.860e-18
Identity = 50/147 (34.01%), Postives = 74/147 (50.34%), Query Frame = 1
Query:    1 MGNVSTTRRKS---TSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFMHYQG-VNRTVCCSKPLCTECYLQVK 429
            MGN ++ + K    +S+EL+K+ +PTGLY++CPWE +  RR I+E  +APR+PG +A                                       G+F              T ECPICFM Y G +N++ CC+KP+C+ECYLQ++
Sbjct:    1 MGNSTSRKAKRQSVSSRELDKFTQPTGLYQSCPWELKAARRLIVERKIAPRFPGREAK-------------------------------------DGNF--------------TLECPICFMFYPGSLNKSSCCNKPICSECYLQIR 96          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A0P1A6S3_PLAHL (Ring u-box domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6S3_PLAHL)

HSP 1 Score: 84.3 bits (207), Expect = 7.760e-17
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 1
Query:    1 MGNVSTT-----RRKSTS-KELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFMHYQG-VNRTVCCSKPLCTECYLQVK 429
            MGN ++      RR ST  ++L+K+ +PTGLY TCPWE + VRR I++  +APR+PG +                                        G F              T ECPICFM Y G +N + CCSKP+C+ECYLQ++
Sbjct:    1 MGNSTSKKSGLGRRHSTGMRDLDKFTQPTGLYSTCPWEHKTVRRLIVDKKLAPRFPGQETK-------------------------------------DGCF--------------TLECPICFMFYPGSLNASSCCSKPICSECYLQIR 99          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A8J5J010_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J010_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.880e-16
Identity = 48/137 (35.04%), Postives = 65/137 (47.45%), Query Frame = 1
Query:   22 RRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFMHYQG-VNRTVCCSKPLCTECYLQVK 429
            R  S+++ELEK+ +PTGLY +CPWE +  RR I+E  +APR+PG +                                        G F              T ECPICFM Y G +N + CC+KP+C+ECYLQV+
Sbjct:   14 RHSSSTRELEKFTQPTGLYPSCPWELKTARRLIMERRLAPRFPGQETK-------------------------------------EGCF--------------TLECPICFMFYPGSLNSSSCCNKPICSECYLQVR 99          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A2P4XKL1_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XKL1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.110e-15
Identity = 46/142 (32.39%), Postives = 67/142 (47.18%), Query Frame = 1
Query:    7 NVSTTRRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFMHY-QGVNRTVCCSKPLCTECYLQVK 429
            N  + R  ++++ELEK+ +PTGLY +CPWE +  RR I+E  +APR+PG +            I+  S  L                                       ECPICFM Y   +N + CC+KP+C+ECYLQ++
Sbjct:    9 NGISRRHSASTRELEKFTQPTGLYPSCPWELKTARRLIIERKLAPRFPGKE------------IKETSFAL---------------------------------------ECPICFMFYPDSLNLSSCCNKPICSECYLQIR 99          
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Match: A0A662YHN7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHN7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.930e-15
Identity = 50/146 (34.25%), Postives = 71/146 (48.63%), Query Frame = 1
Query:    1 MGNVSTTRRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYPGSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHXXXXXXXXXVYQTEECPICFM--HYQG-VNRTVCCSKPLCTECYLQVK 429
            MGN  + R  +T++ELEKY +PTGLY +CPWE    RR I+E  +APR+PG +          P      M+     M LS                           Y+T+     F+  +Y G +N T CC+KP+C+ECYLQ++
Sbjct:   26 MGNSPSKRHSATTRELEKYTQPTGLYPSCPWEATTARRLIVERKLAPRFPGQETKEGCFALECPICF---MVFLRGLMALS------------------------VDEYETDLTDPVFVGQYYPGSLNMTTCCNKPICSECYLQIR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100406.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L120_9PHAE8.820e-4461.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LDS6_ECTSI3.050e-4358.93RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z3B9_9STRA4.990e-2539.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H3GTB9_PHYRM2.070e-2038.62Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1C573_PYTOL5.830e-1936.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3WZI7_9STRA2.860e-1834.01Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A0P1A6S3_PLAHL7.760e-1734.67Ring u-box domain-containing protein n=1 Tax=Plasm... [more]
A0A8J5J010_9STRA2.880e-1635.04Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A2P4XKL1_9STRA2.110e-1532.39RING-type domain-containing protein n=2 Tax=Phytop... [more]
A0A662YHN7_9STRA6.930e-1534.25Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100406contigF-distichus_contig100406:552..1826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue8e-39
Seed eggNOG ortholog2880.D8LDS6
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.cellular response to glucose starvation
EggNOG OGsKOG2789@1,KOG2789@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size456
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100406.44.1prot_F-distichus_contig100406.44.1Fucus distichus monoicouspolypeptideF-distichus_contig100406 552..1826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.3417816-CDS-F-distichus_contig100406:551..7131622928924.3417816-CDS-F-distichus_contig100406:551..713Fucus distichus monoicousCDSF-distichus_contig100406 552..713 -
1690885063.550106-CDS-F-distichus_contig100406:551..7131690885063.550106-CDS-F-distichus_contig100406:551..713Fucus distichus monoicousCDSF-distichus_contig100406 552..713 -
1622928924.3562179-CDS-F-distichus_contig100406:791..10141622928924.3562179-CDS-F-distichus_contig100406:791..1014Fucus distichus monoicousCDSF-distichus_contig100406 792..1014 -
1690885063.7466097-CDS-F-distichus_contig100406:791..10141690885063.7466097-CDS-F-distichus_contig100406:791..1014Fucus distichus monoicousCDSF-distichus_contig100406 792..1014 -
1622928924.3684244-CDS-F-distichus_contig100406:1755..18261622928924.3684244-CDS-F-distichus_contig100406:1755..1826Fucus distichus monoicousCDSF-distichus_contig100406 1756..1826 -
1690885063.810671-CDS-F-distichus_contig100406:1755..18261690885063.810671-CDS-F-distichus_contig100406:1755..1826Fucus distichus monoicousCDSF-distichus_contig100406 1756..1826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100406.44.1

>prot_F-distichus_contig100406.44.1 ID=prot_F-distichus_contig100406.44.1|Name=mRNA_F-distichus_contig100406.44.1|organism=Fucus distichus monoicous|type=polypeptide|length=152bp
MGNVSTTRRKSTSKELEKYCRPTGLYETCPWEERVVRRWILEGHVAPRYP
GSDAPGVVNVSSGPAIESGSMMLYGSSMTLSGAGFSSRGGAGSGHFGHQQ
QQQQQQQVYQTEECPICFMHYQGVNRTVCCSKPLCTECYLQVKLSFFRIP
L*
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mRNA from alignment at F-distichus_contig100406:552..1826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100406.44.1 ID=mRNA_F-distichus_contig100406.44.1|Name=mRNA_F-distichus_contig100406.44.1|organism=Fucus distichus monoicous|type=mRNA|length=1275bp|location=Sequence derived from alignment at F-distichus_contig100406:552..1826- (Fucus distichus monoicous)
ATGGGGAACGTGTCCACCACTCGCCGGAAGAGCACCAGCAAGGAGCTCGA GAAGTACTGCAGGCCAACCGGGTACGTTTCGGTACTTTATATTCTGTTGT TATACCGCCCTTTTGTGTGTAGCTGGTATTATTTATGGCATGGAGTCGTA CTTGAGTGCCTGGTACAGAACTGGTACCTACCGTCTTTAGTGTTGTGTTA CAGTATTAATATTATATTTCTCCAGCGGAGGGGAGGGGATGTTTTCGTGG CACACCCGTTTCGTATAAGCATAGCAGATGGTGTTCGACAGCGAAATATA TATTACTGTATACCGCAATCGTAGCGTTGCGCCGCAACAAACGAGCCTCC TCCTAGCCTCTGATCTGATCCATCCTGCCGTGTAACGGGGGGGAGGCGGT GCACCGGTAAGCAGATTTCGTGTCAAGTCGCGATTACGGTAGTACGCGTA ACGTAGTCAAGTCAGTACCGGGTACAAAGGCAGACAGTGCCCTGTTTCTG CAACGTCGTAGGTTTTCGTGCAAAGTTTCGGAGGCATAGTCTATACCTAT GGTAGCTAACCTCTTCCGCCGTTTGAACAATAGATGTGTAAGACTAATAA TAGATGCTGAGGAAGCAGGACGAGGCAGGGTTGCTAACCGTACCTCGTTT TTATACCGGAGGTTGCTATCACTGAGTTTGGACCACTGTTGTGCCGTTGT ACAATTGAAATTTTCCTCTTTTGGAAGTAATTTCCTCGTCTCCTTTCTTG TTGTGTGAGGACGTCATCCATGGTTTCATTGCTGTTATGCCGTGGTCGTG CTGAATGAAAAGGCTGTACGAGACATGTCCCTGGGAGGAGCGAGTCGTGC GGAGGTGGATCTTGGAAGGTCACGTGGCACCGCGCTATCCAGGGTCCGAT GCCCCCGGCGTAGTCAACGTCAGCAGCGGTCCTGCCATCGAGAGCGGAAG CATGATGCTTTACGGTTCGTCAATGACACTTTCGGGCGCTGGTTTTTCGT CGAGAGGCGGCGCGGGCTCTGGTCACTTCGGGCACGTCGGCGGGGGGCAG CTTCAACAGCACCAACAAAGCCGCCAGCAGCAGCAACAACAGCAGCAGCA ACAACAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAAGTGTACCAGA CAGAAGAGTGTCCGATCTGCTTCATGCATTACCAGGGGGTGAACCGGACC GTCTGCTGCTCGAAGCCGCTTTGTACAGAGTGCTACCTACAGGTAAAGTT GTCCTTTTTTCGCATCCCTTTGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig100406:552..1826-

>mRNA_F-distichus_contig100406.44.1 ID=mRNA_F-distichus_contig100406.44.1|Name=mRNA_F-distichus_contig100406.44.1|organism=Fucus distichus monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at F-distichus_contig100406:552..1826- (Fucus distichus monoicous)
ATGGGGAACGTGTCCACCACTCGCCGGAAGAGCACCAGCAAGGAGCTCGA
GAAGTACTGCAGGCCAACCGGATGGGGAACGTGTCCACCACTCGCCGGAA
GAGCACCAGCAAGGAGCTCGAGAAGTACTGCAGGCCAACCGGGCTGTACG
AGACATGTCCCTGGGAGGAGCGAGTCGTGCGGAGGTGGATCTTGGAAGGT
CACGTGGCACCGCGCTATCCAGGGTCCGATGCCCCCGGCGTAGTCAACGT
CAGCAGCGGTCCTGCCATCGAGAGCGGAAGCATGATGCTTTACGGTTCGT
CAATGACACTTTCGGGCGCTGGTTTTTCGTCGAGAGGCGGCGCGGGCTCT
GGTCACTTCGGGCACGCTGTACGAGACATGTCCCTGGGAGGAGCGAGTCG
TGCGGAGGTGGATCTTGGAAGGTCACGTGGCACCGCGCTATCCAGGGTCC
GATGCCCCCGGCGTAGTCAACGTCAGCAGCGGTCCTGCCATCGAGAGCGG
AAGCATGATGCTTTACGGTTCGTCAATGACACTTTCGGGCGCTGGTTTTT
CGTCGAGAGGCGGCGCGGGCTCTGGTCACTTCGGGCACCAACAACAGCAG
CAGCAGCAGCAGCAAGTGTACCAGACAGAAGAGTGTCCGATCTGCTTCAT
GCATTACCAGGGGGTGAACCGGACCGTCTGCTGCTCGAAGCCGCTTTGTA
CAGAGTGCTACCTACAGGTAAAGTTGTCCTTTTTTCGCATCCCTTTGTGA
CAACAACAGCAGCAGCAGCAGCAGCAAGTGTACCAGACAGAAGAGTGTCC
GATCTGCTTCATGCATTACCAGGGGGTGAACCGGACCGTCTGCTGCTCGA
AGCCGCTTTGTACAGAGTGCTACCTACAGGTAAAGTTGTCCTTTTTTCGC
ATCCCTTTGTGA
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