mRNA_F-distichus_contig1004.43.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1004.43.1
Unique NamemRNA_F-distichus_contig1004.43.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1004.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1004contigF-distichus_contig1004:18952..21130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size640
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1004.43.1prot_F-distichus_contig1004.43.1Fucus distichus monoicouspolypeptideF-distichus_contig1004 18953..21130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.248506-CDS-F-distichus_contig1004:18952..190181622928924.248506-CDS-F-distichus_contig1004:18952..19018Fucus distichus monoicousCDSF-distichus_contig1004 18953..19018 -
1690885063.3708727-CDS-F-distichus_contig1004:18952..190181690885063.3708727-CDS-F-distichus_contig1004:18952..19018Fucus distichus monoicousCDSF-distichus_contig1004 18953..19018 -
1622928924.2629597-CDS-F-distichus_contig1004:19688..199881622928924.2629597-CDS-F-distichus_contig1004:19688..19988Fucus distichus monoicousCDSF-distichus_contig1004 19689..19988 -
1690885063.3831112-CDS-F-distichus_contig1004:19688..199881690885063.3831112-CDS-F-distichus_contig1004:19688..19988Fucus distichus monoicousCDSF-distichus_contig1004 19689..19988 -
1622928924.2790346-CDS-F-distichus_contig1004:20473..206921622928924.2790346-CDS-F-distichus_contig1004:20473..20692Fucus distichus monoicousCDSF-distichus_contig1004 20474..20692 -
1690885063.3961022-CDS-F-distichus_contig1004:20473..206921690885063.3961022-CDS-F-distichus_contig1004:20473..20692Fucus distichus monoicousCDSF-distichus_contig1004 20474..20692 -
1622928924.2935565-CDS-F-distichus_contig1004:21076..211301622928924.2935565-CDS-F-distichus_contig1004:21076..21130Fucus distichus monoicousCDSF-distichus_contig1004 21077..21130 -
1690885063.4044867-CDS-F-distichus_contig1004:21076..211301690885063.4044867-CDS-F-distichus_contig1004:21076..21130Fucus distichus monoicousCDSF-distichus_contig1004 21077..21130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1004.43.1

>prot_F-distichus_contig1004.43.1 ID=prot_F-distichus_contig1004.43.1|Name=mRNA_F-distichus_contig1004.43.1|organism=Fucus distichus monoicous|type=polypeptide|length=213bp
PYVGPLCTTIQRIIDIIKITLQMLPDSIGILSGDEKILCDGRLNQLREHL
DEMQNIIAALKSKGVLSRTLGAKADKERIDSLREALATAKQDLILLLSIF
SGTRLDILVASMARLHDVVAPIVELLNEANMQRVTSLMKQLDQEYNSTMY
KHMEKLESYEERMGDRYATALILPPILVSPEEREEILGHMRTLGVFWRGI
QQQYKNGTDIFNN
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mRNA from alignment at F-distichus_contig1004:18952..21130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1004.43.1 ID=mRNA_F-distichus_contig1004.43.1|Name=mRNA_F-distichus_contig1004.43.1|organism=Fucus distichus monoicous|type=mRNA|length=2179bp|location=Sequence derived from alignment at F-distichus_contig1004:18952..21130- (Fucus distichus monoicous)
CCGTATGTGGGTCCCCTCTGCACGACCATACAGCGGATTATTGACATTAT
CAAAGTGAGTAAGAATGTTCGAGAAATCTGCATGGAGGAATTTCCAACGG
AGCTTCGAATGATGCAGGTGATTTCTGCCCCATAGACCCTTCTGTGTACA
AACAACGGTAACATGATCGCACACAGGCTTGAATGAACTTCGTTCGGTGC
ATCCTGTACTTGCTTCCTAAATTGTGATTTACGCTTTCAGCACGAACTGG
CCCCAGGGGCTTATTTCTCTAAAATGTTGGGCTATCTAAACAGCTTCGTC
GATCTGATTGACGCAGTTGTTAAAGCTAGCCCGAGGCTTCCCTGTTCGGA
TCGCTTAGATGAGGTCTTGGCCTCATCCTGTCCCCCGACTATATATCCGC
GCTCAACAAGCGAAGACCTTTTATTAATTTACCCTCAGATAACCCTTCAG
ATGCTTCCTGACAGCATCGGCATCCTATCCGGCGACGAGAAGATTCTGTG
CGATGGCCGCTTAAATCAGCTACGCGAACACCTTGATGAGATGCAGAATA
TCATCGCCGCTTTAAAATCCAAGGGGGTGCTTTCGAGGACGTTAGGGGCG
AAAGCTGACAAGGAGCGAATCGACAGTCTACGGGAGGCGTTGGCAACGGC
CAAACAGGTTGACACGAAGTTTCTACCACCGGATGCTGGAGCTTTTTCAA
TCCTACGCTATCAAACGGCATTTTTCTTTGGGTCACAACTGACGGCGACG
CTGGCCGTGCAAGCTTTCTCCGCTGTGTAGCCATGAAAAAGAAAGTGTAT
TTTCTGAGTATTGCGCTGGGCGAATGAGATGCGTCTTCGTTGAAGGGCTG
CTTATTGTGTGATCACGGCTGAGCTAGCATAACTTTGCGATGCAGCAGTT
TGTCGACAGCCTCTGGGCGGACGTTAACATTCTCATATAGGGAAATACCA
AGGCACGTTACCTCGTTTCTTGAACGCCATCAGGGAGTGCGTGTTCGTTT
TAAGCGTTAAAAGCATAATCCATATTTGACGTTCACGATATCCAGTCTGC
TACTTACATCGAAACGCGTATACCTAGGCCTTGGGCAGGACTCTCATGCT
CTTCTTCTGCGCCGTACACCTTTCAATATGCCGAAACCACAGGACCTGAT
ACTTCTGCTTAGCATTTTTAGTGGGACCCGACTGGACATCTTGGTGGCGT
CCATGGCACGCTTGCACGATGTCGTCGCGCCAATCGTCGAGCTTCTCAAT
GAGGCTAATATGCAACGCGTCACGAGCCTGATGAAGCAACTGGATCAGGA
ATACAACAGCACGATGTATAAACACATGGAGAAGCTTGAGTCGTACGAGG
AGCGCATGGGTGACCGGTATGCCACGGCGTTGATCCTGCCACCTATTTTA
GTTTCTCCCGAAGAGCGCGAAGAAATTCTCGGCCACATGAGGGTAGGTCC
CTGCTTGTTCTTATTTGGGAAGAATCATGATGGATATTAAAGGTTTTATC
GCCCTGTCCGTGGTTTTAGAGAAACCTCGGCCTTTATGTGGCGCGGCTGA
GCCGTACGCGCGCCCTTGTCGCCTGAGTCATACGTTGTATCTCCTCGTCT
GTACTAAACGATGGGGTGCACTCTTTAAGGGCGAGACTCTCGCATCACCA
CGGACGTGAGATGTTCAGTTACTTCGGTAGTGGAACTTGAACGCTACAGA
CTAGGATGTGGACGTGGCGGGTACGTTGTACAGTTTATTCGCTCATCTCG
CGTCCCGTTCAAGCCTGGTCCATCCCTACACAGTTGTGTTTCGTGTGAGT
GTATGGAATGTCTAACCCTCGCTTGGTAATGCTGATAGACGGCGTTCCGT
TGAGTTATGCCTACTGTTGTCTTCTGGGCCGGAAGCAACCATCATGCTTT
ACTCTATATCTGCCCAAATTGTTTACATAGTTTTATTAAAACTCTTGCCT
CGTAGAATCGAAACATTCTGTGTTTGGCCCCAGGGTTTGGCTAGTAAAGA
CGTAGAAGCCTGTTCAGCCGTGAATGCTACCTGTCGCGTGCTCATACATC
TTCAATGTTACGAAACGTGCCTCTTTCTATACTTTTCCATGTACGTACTG
GCGATCCCGAAGACTCTGGGGGTATTCTGGAGAGGCATTCAGCAGCAGTA
CAAGAACGGGACGGACATTTTCAACAACA
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Coding sequence (CDS) from alignment at F-distichus_contig1004:18952..21130-

>mRNA_F-distichus_contig1004.43.1 ID=mRNA_F-distichus_contig1004.43.1|Name=mRNA_F-distichus_contig1004.43.1|organism=Fucus distichus monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at F-distichus_contig1004:18952..21130- (Fucus distichus monoicous)
CCGTATGTGGGTCCCCTCTGCACGACCATACAGCGGATTATTGACATTAT
CAAACCGTATGTGGGTCCCCTCTGCACGACCATACAGCGGATTATTGACA
TTATCAAAATAACCCTTCAGATGCTTCCTGACAGCATCGGCATCCTATCC
GGCGACGAGAAGATTCTGTGCGATGGCCGCTTAAATCAGCTACGCGAACA
CCTTGATGAGATGCAGAATATCATCGCCGCTTTAAAATCCAAGGGGGTGC
TTTCGAGGACGTTAGGGGCGAAAGCTGACAAGGAGCGAATCGACAGTCTA
CGGGAGGCGTTGGCAACGGCCAAACAGATAACCCTTCAGATGCTTCCTGA
CAGCATCGGCATCCTATCCGGCGACGAGAAGATTCTGTGCGATGGCCGCT
TAAATCAGCTACGCGAACACCTTGATGAGATGCAGAATATCATCGCCGCT
TTAAAATCCAAGGGGGTGCTTTCGAGGACGTTAGGGGCGAAAGCTGACAA
GGAGCGAATCGACAGTCTACGGGAGGCGTTGGCAACGGCCAAACAGGACC
TGATACTTCTGCTTAGCATTTTTAGTGGGACCCGACTGGACATCTTGGTG
GCGTCCATGGCACGCTTGCACGATGTCGTCGCGCCAATCGTCGAGCTTCT
CAATGAGGCTAATATGCAACGCGTCACGAGCCTGATGAAGCAACTGGATC
AGGAATACAACAGCACGATGTATAAACACATGGAGAAGCTTGAGTCGTAC
GAGGAGCGCATGGGTGACCGGTATGCCACGGCGTTGATCCTGCCACCTAT
TTTAGTTTCTCCCGAAGAGCGCGAAGAAATTCTCGGCCACATGAGGGACC
TGATACTTCTGCTTAGCATTTTTAGTGGGACCCGACTGGACATCTTGGTG
GCGTCCATGGCACGCTTGCACGATGTCGTCGCGCCAATCGTCGAGCTTCT
CAATGAGGCTAATATGCAACGCGTCACGAGCCTGATGAAGCAACTGGATC
AGGAATACAACAGCACGATGTATAAACACATGGAGAAGCTTGAGTCGTAC
GAGGAGCGCATGGGTGACCGGTATGCCACGGCGTTGATCCTGCCACCTAT
TTTAGTTTCTCCCGAAGAGCGCGAAGAAATTCTCGGCCACATGAGGACTC
TGGGGGTATTCTGGAGAGGCATTCAGCAGCAGTACAAGAACGGGACGGAC
ATTTTCAACAACACTCTGGGGGTATTCTGGAGAGGCATTCAGCAGCAGTA
CAAGAACGGGACGGACATTTTCAACAAC
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