mRNA_F-distichus_contig100377.42.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100377.42.1
Unique NamemRNA_F-distichus_contig100377.42.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100377.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100377contigF-distichus_contig100377:50..2047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1225
Cds size1065
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100377.42.1prot_F-distichus_contig100377.42.1Fucus distichus monoicouspolypeptideF-distichus_contig100377 983..2047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.1725726-UTR-F-distichus_contig100377:49..1801622928924.1725726-UTR-F-distichus_contig100377:49..180Fucus distichus monoicousUTRF-distichus_contig100377 50..180 +
1690885063.142747-UTR-F-distichus_contig100377:49..1801690885063.142747-UTR-F-distichus_contig100377:49..180Fucus distichus monoicousUTRF-distichus_contig100377 50..180 +
1622928924.1937509-UTR-F-distichus_contig100377:954..9821622928924.1937509-UTR-F-distichus_contig100377:954..982Fucus distichus monoicousUTRF-distichus_contig100377 955..982 +
1690885063.2258797-UTR-F-distichus_contig100377:954..9821690885063.2258797-UTR-F-distichus_contig100377:954..982Fucus distichus monoicousUTRF-distichus_contig100377 955..982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.2092988-CDS-F-distichus_contig100377:982..20471622928924.2092988-CDS-F-distichus_contig100377:982..2047Fucus distichus monoicousCDSF-distichus_contig100377 983..2047 +
1690885063.3569539-CDS-F-distichus_contig100377:982..20471690885063.3569539-CDS-F-distichus_contig100377:982..2047Fucus distichus monoicousCDSF-distichus_contig100377 983..2047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100377.42.1

>prot_F-distichus_contig100377.42.1 ID=prot_F-distichus_contig100377.42.1|Name=mRNA_F-distichus_contig100377.42.1|organism=Fucus distichus monoicous|type=polypeptide|length=355bp
MTRHKTTAVKVARAPATCADGEVRQTGRNVHAAAQANGSSAALQVVGETL
QVEAAIGRKKSCGVTGPTFTAAIRAAVAETPAPPANRAKVPPIVTPSGGS
GSSNFGSSASVHERHIICGRALESNTNGNRGRSGGGGGINPHEDDLHLRT
RPEYSPTAAAVAVQAVSTSRGPSKASPLRVPIPIASTPRSSSALTRARSD
SARLREGVPAPSIVAAALTTSSRVVAAAGVAEEVGTRSKLHPTLPPAKHD
FVRSSTRATTSEQASAVNGSDASETNDERGGLAMASAKAVGNASTSAGPD
PAAARTVLLTAVAAPEDSLVACSTRTHAALANGGDSAGDAGVANQRGRRE
GAGRE
back to top

mRNA from alignment at F-distichus_contig100377:50..2047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100377.42.1 ID=mRNA_F-distichus_contig100377.42.1|Name=mRNA_F-distichus_contig100377.42.1|organism=Fucus distichus monoicous|type=mRNA|length=1998bp|location=Sequence derived from alignment at F-distichus_contig100377:50..2047+ (Fucus distichus monoicous)
CTACACACTTTTCAAAAAAAAAAAAAAAAAAACGTGATGACTGCCTGAGC
AATTGCTGCGAGCCCGAGCGAGCACATCGCCGAGAGGGTGCCAGAGCATG
GAAGCGTGGAACCGAGGCGCTGAATCGGCAGGTGAGGGCCTTTCTTTCCA
CGGGTCGTCTTGCGGTAGAAAAACAACGAAGAGCGGTTTTGAAAAACCAT
CTGGGAAGAAGGAAAATCGTCGGACCAAAATTGGTGGGACGTGTTTGTAT
GGCACCCCATGCATCTCAACCAGATGGCTTACCTCCCAGATAACAGTATA
TCTAGCTAGTACGAACGTGTGGCCCGCGTGCGATTTCCCTGCTGGCCGGC
TCTTACTGCCTTGAGCGAAGGGTAGGCACATTCATTATCTGTTGTCAGTA
TTGACTGATGAAGTCTCATCCTCATTTCAGCGAAGAAAAGTTCAATACTG
TATACAAGTAGTTCCTTTTTCCCTCTATGGTATGCGAGTACATTCCACAT
TATTTTTGGTATCTTTTGACACCCTACGGAGGGGTCTCTTTTCCTGTCAC
CCACAGCCGCTTGCTCGTCCCTCATACTGCACTCTACTGCTGTTGACCGC
TTGCCGCTTGCCTAGTACGGTATACAGTCGACAAAACCGCTCGGGAGGGA
TTGAAATATTGGTGTATTTAACGTGCCGGCCTCGCCAGCTCTCGATCCTC
GCTCGAGTGGGGTGCGTGTCGGTGTATCTTGCGCATCTTATCTCTGCGTT
TCTCTCATTTTATGTATGCGTCGTCGTCTTGAATCGTATACACGGTGATC
AGACAGCCGTACTGCTCGGTTAAAGAAAGCCTACAAAACAGCACAGAACT
CGTCCGCCGGTTCGCCTCATTGATAACCACCTAACTGATGCCTGTTGCAC
AGTAGGTACCGAGAGACAGCAGCGGAACAGAAAATGACGAGGCATAAAAC
CACCGCGGTGAAAGTCGCGAGGGCTCCGGCTACTTGCGCCGACGGGGAAG
TCCGACAGACTGGCCGAAATGTACACGCGGCGGCCCAAGCGAATGGCTCC
AGCGCAGCATTGCAAGTCGTGGGCGAAACACTTCAAGTGGAGGCTGCGAT
CGGACGAAAAAAGTCATGCGGAGTCACAGGTCCGACGTTTACTGCGGCGA
TAAGAGCAGCAGTAGCAGAGACCCCGGCACCTCCCGCGAATAGAGCCAAG
GTGCCGCCGATCGTCACGCCTTCCGGCGGCAGCGGTTCCAGTAACTTTGG
TAGCTCTGCATCTGTTCATGAACGTCATATAATTTGTGGGAGGGCGCTGG
AGAGCAACACCAACGGCAACCGCGGCCGCAGCGGCGGCGGCGGCGGCATC
AACCCGCATGAGGATGACCTCCACCTCAGAACGCGACCTGAATATTCACC
AACCGCCGCCGCCGTTGCGGTACAAGCCGTTTCGACATCTCGAGGACCAT
CAAAAGCTTCTCCATTGCGAGTGCCTATACCAATCGCCTCCACCCCCAGA
TCATCGTCTGCTCTGACCCGAGCACGATCTGACTCCGCCAGACTGCGAGA
AGGAGTTCCGGCGCCTTCCATCGTTGCCGCTGCGCTGACCACAAGCTCGC
GAGTGGTTGCAGCGGCAGGGGTCGCGGAGGAGGTGGGTACCCGATCAAAG
CTTCATCCTACGTTGCCTCCCGCAAAGCACGATTTCGTCCGCTCGTCTAC
GAGAGCAACCACGTCGGAGCAGGCATCGGCGGTGAACGGCAGCGATGCGA
GCGAGACGAACGACGAACGCGGTGGTCTGGCAATGGCTTCTGCAAAGGCG
GTGGGCAATGCGTCAACATCAGCTGGACCTGACCCAGCTGCAGCTCGAAC
TGTTTTGTTAACCGCAGTCGCCGCTCCCGAAGACAGTCTCGTCGCTTGTA
GCACCCGCACACATGCGGCGCTCGCAAACGGCGGCGACTCTGCTGGTGAT
GCCGGCGTTGCAAACCAGCGTGGAAGGAGAGAGGGGGCGGGACGGGAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig100377:50..2047+

>mRNA_F-distichus_contig100377.42.1 ID=mRNA_F-distichus_contig100377.42.1|Name=mRNA_F-distichus_contig100377.42.1|organism=Fucus distichus monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at F-distichus_contig100377:50..2047+ (Fucus distichus monoicous)
ATGACGAGGCATAAAACCACCGCGGTGAAAGTCGCGAGGGCTCCGGCTAC
TTGCGCCGACGGGGAAGTCCGACAGACTGGCCGAAATGTACACGCGGCGG
CCCAAGCGAATGGCTCCAGCGCAGCATTGCAAGTCGTGGGCGAAACACTT
CAAGTGGAGGCTGCGATCGGACGAAAAAAGTCATGCGGAGTCACAGGTCC
GACGTTTACTGCGGCGATAAGAGCAGCAGTAGCAGAGACCCCGGCACCTC
CCGCGAATAGAGCCAAGGTGCCGCCGATCGTCACGCCTTCCGGCGGCAGC
GGTTCCAGTAACTTTGGTAGCTCTGCATCTGTTCATGAACGTCATATAAT
TTGTGGGAGGGCGCTGGAGAGCAACACCAACGGCAACCGCGGCCGCAGCG
GCGGCGGCGGCGGCATCAACCCGCATGAGGATGACCTCCACCTCAGAACG
CGACCTGAATATTCACCAACCGCCGCCGCCGTTGCGGTACAAGCCGTTTC
GACATCTCGAGGACCATCAAAAGCTTCTCCATTGCGAGTGCCTATACCAA
TCGCCTCCACCCCCAGATCATCGTCTGCTCTGACCCGAGCACGATCTGAC
TCCGCCAGACTGCGAGAAGGAGTTCCGGCGCCTTCCATCGTTGCCGCTGC
GCTGACCACAAGCTCGCGAGTGGTTGCAGCGGCAGGGGTCGCGGAGGAGG
TGGGTACCCGATCAAAGCTTCATCCTACGTTGCCTCCCGCAAAGCACGAT
TTCGTCCGCTCGTCTACGAGAGCAACCACGTCGGAGCAGGCATCGGCGGT
GAACGGCAGCGATGCGAGCGAGACGAACGACGAACGCGGTGGTCTGGCAA
TGGCTTCTGCAAAGGCGGTGGGCAATGCGTCAACATCAGCTGGACCTGAC
CCAGCTGCAGCTCGAACTGTTTTGTTAACCGCAGTCGCCGCTCCCGAAGA
CAGTCTCGTCGCTTGTAGCACCCGCACACATGCGGCGCTCGCAAACGGCG
GCGACTCTGCTGGTGATGCCGGCGTTGCAAACCAGCGTGGAAGGAGAGAG
GGGGCGGGACGGGAGATGACGAGGCATAAAACCACCGCGGTGAAAGTCGC
GAGGGCTCCGGCTACTTGCGCCGACGGGGAAGTCCGACAGACTGGCCGAA
ATGTACACGCGGCGGCCCAAGCGAATGGCTCCAGCGCAGCATTGCAAGTC
GTGGGCGAAACACTTCAAGTGGAGGCTGCGATCGGACGAAAAAAGTCATG
CGGAGTCACAGGTCCGACGTTTACTGCGGCGATAAGAGCAGCAGTAGCAG
AGACCCCGGCACCTCCCGCGAATAGAGCCAAGGTGCCGCCGATCGTCACG
CCTTCCGGCGGCAGCGGTTCCAGTAACTTTGGTAGCTCTGCATCTGTTCA
TGAACGTCATATAATTTGTGGGAGGGCGCTGGAGAGCAACACCAACGGCA
ACCGCGGCCGCAGCGGCGGCGGCGGCGGCATCAACCCGCATGAGGATGAC
CTCCACCTCAGAACGCGACCTGAATATTCACCAACCGCCGCCGCCGTTGC
GGTACAAGCCGTTTCGACATCTCGAGGACCATCAAAAGCTTCTCCATTGC
GAGTGCCTATACCAATCGCCTCCACCCCCAGATCATCGTCTGCTCTGACC
CGAGCACGATCTGACTCCGCCAGACTGCGAGAAGGAGTTCCGGCGCCTTC
CATCGTTGCCGCTGCGCTGACCACAAGCTCGCGAGTGGTTGCAGCGGCAG
GGGTCGCGGAGGAGGTGGGTACCCGATCAAAGCTTCATCCTACGTTGCCT
CCCGCAAAGCACGATTTCGTCCGCTCGTCTACGAGAGCAACCACGTCGGA
GCAGGCATCGGCGGTGAACGGCAGCGATGCGAGCGAGACGAACGACGAAC
GCGGTGGTCTGGCAATGGCTTCTGCAAAGGCGGTGGGCAATGCGTCAACA
TCAGCTGGACCTGACCCAGCTGCAGCTCGAACTGTTTTGTTAACCGCAGT
CGCCGCTCCCGAAGACAGTCTCGTCGCTTGTAGCACCCGCACACATGCGG
CGCTCGCAAACGGCGGCGACTCTGCTGGTGATGCCGGCGTTGCAAACCAG
CGTGGAAGGAGAGAGGGGGCGGGACGGGAG
back to top