mRNA_F-distichus_contig100376.41.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: D8LLL3_ECTSI (TP_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL3_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.910e-29 Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1
Query: 13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
RA+NILRTADVIAAEDTRTTG LLKLLG+ER G+LVSHH+HNT+RRVPEI++A R GKSVA+VSDAGTP
Sbjct: 201 RAMNILRTADVIAAEDTRTTGSLLKLLGVERKGRLVSHHDHNTKRRVPEIVEAARGGKSVAVVSDAGTP 269
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A6H5JVG6_9PHAE (TP_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG6_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.290e-28 Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1
Query: 13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
RA+NILRTA+VIAAEDTRTTG LLKLLG+ER G+LVSHH+HNT+RRVPEI+ A R GKSVA+VSDAGTP
Sbjct: 208 RAMNILRTAEVIAAEDTRTTGSLLKLLGVEREGRLVSHHDHNTKRRVPEIVQAARGGKSVAVVSDAGTP 276
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A846M0P0_9MICC (16S rRNA (Cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Auritidibacter ignavus TaxID=678932 RepID=A0A846M0P0_9MICC) HSP 1 Score: 83.2 bits (204), Expect = 3.180e-18 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
R +L +A++IAAEDTRTT RL LG+E G+L+SHHEHN +R PE+L+ VR G +VA+V+DAG P
Sbjct: 36 RLRTVLASAEIIAAEDTRTTQRLATALGVEIRGQLISHHEHNEQRSTPELLEKVRQGATVAVVTDAGMP 104
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A7S2R6H6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6H6_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 4.080e-18 Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
RA+++LR ADVIAAEDTR TGRLL LLG+ G+L S H HN R +V ++ G +VALV+DAGTP
Sbjct: 17 RAVSVLREADVIAAEDTRRTGRLLDLLGIPARGRLQSFHAHNWRSKVDNLVQRALEGAAVALVTDAGTP 85
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A7S0LHT1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHT1_9EUKA) HSP 1 Score: 79.7 bits (195), Expect = 1.090e-17 Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
RAI LRTADVIA EDTR T RLL LG+ + +LVSHHEHNT VP+++ + G ++A+VSDAGTP
Sbjct: 29 RAIRTLRTADVIACEDTRHTARLLHHLGVGKK-RLVSHHEHNTHTAVPKLIALAQAGNTIAVVSDAGTP 96
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A318AHW4_9MICC (Ribosomal RNA small subunit methyltransferase I n=6 Tax=Auritidibacter TaxID=1160973 RepID=A0A318AHW4_9MICC) HSP 1 Score: 83.2 bits (204), Expect = 1.790e-17 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
R +L +A++IAAEDTRTT RL LG+E G+L+SHHEHN +R PE+L+ VR G +VA+V+DAG P
Sbjct: 36 RLRTVLASAEIIAAEDTRTTQRLATALGVEIRGQLISHHEHNEQRSTPELLEKVRQGATVAVVTDAGMP 104
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A2T2UKM5_9PROT (rRNA (Cytidine-2'-O-)-methyltransferase (Fragment) n=1 Tax=Proteobacteria bacterium SW_6_67_9 TaxID=1919227 RepID=A0A2T2UKM5_9PROT) HSP 1 Score: 79.0 bits (193), Expect = 1.820e-17 Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 7 SCRAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
S RA ++ A V+AAEDTR TGR LK LG++ +LVS HEHN R+R+P +++ + G SVALVSDAGTP
Sbjct: 22 SARARRVIAAATVVAAEDTRYTGRFLKELGID--AELVSVHEHNERQRIPGLMERLARGASVALVSDAGTP 90
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A4Y4D6A3_KOCVA (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Kocuria varians TaxID=1272 RepID=A0A4Y4D6A3_KOCVA) HSP 1 Score: 82.8 bits (203), Expect = 2.650e-17 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 7 SCRAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
S R + ILRTADV+A EDTRT RL LG+ G++V+HHEHN R E+LD VR GK+VA++SDAG P
Sbjct: 37 SPRLLEILRTADVLAVEDTRTLHRLAAGLGVNVTGRVVTHHEHNETARTAELLDEVRRGKTVAVLSDAGMP 107
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: UPI0019A34CBE (16S rRNA (Cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Hymenobacteraceae bacterium TaxID=2065362 RepID=UPI0019A34CBE) HSP 1 Score: 81.6 bits (200), Expect = 2.660e-17 Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
RA+ +LR AD I EDTRTTG+LL LLG+E G+L++HH+HN R V ++ + G+ +ALVSDAGTP
Sbjct: 25 RALRVLRDADAILCEDTRTTGQLLHLLGIEAKGRLLAHHQHNEHRYVEALVARLEAGQHLALVSDAGTP 93
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A2E3P8A4_9PROT (Ribosomal RNA small subunit methyltransferase I n=4 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3P8A4_9PROT) HSP 1 Score: 82.8 bits (203), Expect = 2.970e-17 Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 7 SCRAINILRTADVIAAEDTRTTGRLLKLLGLER--AGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
S RA ++L AD+IA EDTR TG+LL +LG++R +G+L+++H+HN R P+I++ +++G SVALVSDAGTP
Sbjct: 42 STRAHDVLARADLIACEDTRVTGKLLMILGIKRGDSGRLLAYHDHNAAHRRPQIMERIKSGGSVALVSDAGTP 114 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig100376.41.1 >prot_F-distichus_contig100376.41.1 ID=prot_F-distichus_contig100376.41.1|Name=mRNA_F-distichus_contig100376.41.1|organism=Fucus distichus monoicous|type=polypeptide|length=73bp MTSCRAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRback to top mRNA from alignment at F-distichus_contig100376:100..830- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig100376.41.1 ID=mRNA_F-distichus_contig100376.41.1|Name=mRNA_F-distichus_contig100376.41.1|organism=Fucus distichus monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at F-distichus_contig100376:100..830- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig100376:100..830- >mRNA_F-distichus_contig100376.41.1 ID=mRNA_F-distichus_contig100376.41.1|Name=mRNA_F-distichus_contig100376.41.1|organism=Fucus distichus monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at F-distichus_contig100376:100..830- (Fucus distichus monoicous)back to top |