mRNA_F-distichus_contig100376.41.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100376.41.1
Unique NamemRNA_F-distichus_contig100376.41.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: D8LLL3_ECTSI (TP_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL3_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.910e-29
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1
Query:   13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            RA+NILRTADVIAAEDTRTTG LLKLLG+ER G+LVSHH+HNT+RRVPEI++A R GKSVA+VSDAGTP
Sbjct:  201 RAMNILRTADVIAAEDTRTTGSLLKLLGVERKGRLVSHHDHNTKRRVPEIVEAARGGKSVAVVSDAGTP 269          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A6H5JVG6_9PHAE (TP_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.290e-28
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            RA+NILRTA+VIAAEDTRTTG LLKLLG+ER G+LVSHH+HNT+RRVPEI+ A R GKSVA+VSDAGTP
Sbjct:  208 RAMNILRTAEVIAAEDTRTTGSLLKLLGVEREGRLVSHHDHNTKRRVPEIVQAARGGKSVAVVSDAGTP 276          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A846M0P0_9MICC (16S rRNA (Cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Auritidibacter ignavus TaxID=678932 RepID=A0A846M0P0_9MICC)

HSP 1 Score: 83.2 bits (204), Expect = 3.180e-18
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            R   +L +A++IAAEDTRTT RL   LG+E  G+L+SHHEHN +R  PE+L+ VR G +VA+V+DAG P
Sbjct:   36 RLRTVLASAEIIAAEDTRTTQRLATALGVEIRGQLISHHEHNEQRSTPELLEKVRQGATVAVVTDAGMP 104          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A7S2R6H6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6H6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.080e-18
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            RA+++LR ADVIAAEDTR TGRLL LLG+   G+L S H HN R +V  ++     G +VALV+DAGTP
Sbjct:   17 RAVSVLREADVIAAEDTRRTGRLLDLLGIPARGRLQSFHAHNWRSKVDNLVQRALEGAAVALVTDAGTP 85          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A7S0LHT1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHT1_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-17
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            RAI  LRTADVIA EDTR T RLL  LG+ +  +LVSHHEHNT   VP+++   + G ++A+VSDAGTP
Sbjct:   29 RAIRTLRTADVIACEDTRHTARLLHHLGVGKK-RLVSHHEHNTHTAVPKLIALAQAGNTIAVVSDAGTP 96          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A318AHW4_9MICC (Ribosomal RNA small subunit methyltransferase I n=6 Tax=Auritidibacter TaxID=1160973 RepID=A0A318AHW4_9MICC)

HSP 1 Score: 83.2 bits (204), Expect = 1.790e-17
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            R   +L +A++IAAEDTRTT RL   LG+E  G+L+SHHEHN +R  PE+L+ VR G +VA+V+DAG P
Sbjct:   36 RLRTVLASAEIIAAEDTRTTQRLATALGVEIRGQLISHHEHNEQRSTPELLEKVRQGATVAVVTDAGMP 104          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A2T2UKM5_9PROT (rRNA (Cytidine-2'-O-)-methyltransferase (Fragment) n=1 Tax=Proteobacteria bacterium SW_6_67_9 TaxID=1919227 RepID=A0A2T2UKM5_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 1.820e-17
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    7 SCRAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            S RA  ++  A V+AAEDTR TGR LK LG++   +LVS HEHN R+R+P +++ +  G SVALVSDAGTP
Sbjct:   22 SARARRVIAAATVVAAEDTRYTGRFLKELGID--AELVSVHEHNERQRIPGLMERLARGASVALVSDAGTP 90          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A4Y4D6A3_KOCVA (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Kocuria varians TaxID=1272 RepID=A0A4Y4D6A3_KOCVA)

HSP 1 Score: 82.8 bits (203), Expect = 2.650e-17
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    7 SCRAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            S R + ILRTADV+A EDTRT  RL   LG+   G++V+HHEHN   R  E+LD VR GK+VA++SDAG P
Sbjct:   37 SPRLLEILRTADVLAVEDTRTLHRLAAGLGVNVTGRVVTHHEHNETARTAELLDEVRRGKTVAVLSDAGMP 107          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: UPI0019A34CBE (16S rRNA (Cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Hymenobacteraceae bacterium TaxID=2065362 RepID=UPI0019A34CBE)

HSP 1 Score: 81.6 bits (200), Expect = 2.660e-17
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   13 RAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            RA+ +LR AD I  EDTRTTG+LL LLG+E  G+L++HH+HN  R V  ++  +  G+ +ALVSDAGTP
Sbjct:   25 RALRVLRDADAILCEDTRTTGQLLHLLGIEAKGRLLAHHQHNEHRYVEALVARLEAGQHLALVSDAGTP 93          
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Match: A0A2E3P8A4_9PROT (Ribosomal RNA small subunit methyltransferase I n=4 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3P8A4_9PROT)

HSP 1 Score: 82.8 bits (203), Expect = 2.970e-17
Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    7 SCRAINILRTADVIAAEDTRTTGRLLKLLGLER--AGKLVSHHEHNTRRRVPEILDAVRNGKSVALVSDAGTP 219
            S RA ++L  AD+IA EDTR TG+LL +LG++R  +G+L+++H+HN   R P+I++ +++G SVALVSDAGTP
Sbjct:   42 STRAHDVLARADLIACEDTRVTGKLLMILGIKRGDSGRLLAYHDHNAAHRRPQIMERIKSGGSVALVSDAGTP 114          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100376.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLL3_ECTSI1.910e-2982.61TP_methylase domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JVG6_9PHAE1.290e-2881.16TP_methylase domain-containing protein n=1 Tax=Ect... [more]
A0A846M0P0_9MICC3.180e-1856.5216S rRNA (Cytidine(1402)-2'-O)-methyltransferase n... [more]
A0A7S2R6H6_9STRA4.080e-1857.97Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0LHT1_9EUKA1.090e-1759.42Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A318AHW4_9MICC1.790e-1756.52Ribosomal RNA small subunit methyltransferase I n=... [more]
A0A2T2UKM5_9PROT1.820e-1756.34rRNA (Cytidine-2'-O-)-methyltransferase (Fragment)... [more]
A0A4Y4D6A3_KOCVA2.650e-1757.75Ribosomal RNA small subunit methyltransferase I n=... [more]
UPI0019A34CBE2.660e-1755.0716S rRNA (Cytidine(1402)-2'-O)-methyltransferase n... [more]
A0A2E3P8A4_9PROT2.970e-1753.42Ribosomal RNA small subunit methyltransferase I n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100376contigF-distichus_contig100376:100..830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog2880.D8LLL3
KEGG koko:K07056
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetrapyrrole (Corrin/Porphyrin) Methylases
EggNOG OGs2QQ7V@2759,COG0313@1
EC2.1.1.198
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.0988395-CDS-F-distichus_contig100376:99..1421622928924.0988395-CDS-F-distichus_contig100376:99..142Fucus distichus monoicousCDSF-distichus_contig100376 100..142 -
1690885063.0486693-CDS-F-distichus_contig100376:99..1421690885063.0486693-CDS-F-distichus_contig100376:99..142Fucus distichus monoicousCDSF-distichus_contig100376 100..142 -
1622928924.1251478-CDS-F-distichus_contig100376:654..8301622928924.1251478-CDS-F-distichus_contig100376:654..830Fucus distichus monoicousCDSF-distichus_contig100376 655..830 -
1690885063.1298676-CDS-F-distichus_contig100376:654..8301690885063.1298676-CDS-F-distichus_contig100376:654..830Fucus distichus monoicousCDSF-distichus_contig100376 655..830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100376.41.1prot_F-distichus_contig100376.41.1Fucus distichus monoicouspolypeptideF-distichus_contig100376 100..830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100376.41.1

>prot_F-distichus_contig100376.41.1 ID=prot_F-distichus_contig100376.41.1|Name=mRNA_F-distichus_contig100376.41.1|organism=Fucus distichus monoicous|type=polypeptide|length=73bp
MTSCRAINILRTADVIAAEDTRTTGRLLKLLGLERAGKLVSHHEHNTRRR
VPEILDAVRNGKSVALVSDAGTP
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mRNA from alignment at F-distichus_contig100376:100..830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100376.41.1 ID=mRNA_F-distichus_contig100376.41.1|Name=mRNA_F-distichus_contig100376.41.1|organism=Fucus distichus monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at F-distichus_contig100376:100..830- (Fucus distichus monoicous)
ATGACGTCATGCAGAGCCATCAATATTCTGAGAACGGCCGACGTGATCGC TGCGGAGGACACGCGCACGACGGGCAGGCTGCTGAAGCTGCTGGGGTTGG AGAGAGCCGGCAAGCTTGTCAGCCATCACGAGCACAACACACGGCGCCGT GTGCCGGAAATCCTGGACGCCGTGAGGTGAACGGCCTCGGTAGATAACGC CCCCCTCGCAAGGAAAACGCCTGAATCGCTCACAGGAGATCCCCGCTTTT TGTAACATGGTGGTACAGTACAGTACAGTAGACTAAAGCGCTCAGGCATT CCACGCGCTGGCTGAATGGTGCAACCGAGAATAGACTAGAATATAATTTA ATATAATATAATAACGCCTTTCTTGGAGTGCCGGTAAGTGTCGCGCGATA CGCTAGGCTAGGTGATCAGTGCCCGGCTCGGTGGAAACTTGAAAGCGAAT GTCCCATCAACAGCTAGGTTGCAACTATCGATTCGGCGGGGGGGGGGACA GAAGCAAGAAAACCAACCCGGCGAACCGTTCGAGACAGAGCCACACGGCG GGTCCCAGCCCGTAGCTCTCACTTGGTGCCGCCATTCTCAACGCTATGTC CTCTTTCGCGTTCCGTCCGCTGTTTTACTGACGTCATCGTCATCATCAAC ATGGCCCTGTTGGTGTTGGTCTTGGTTTTCATCTCAAGGAACGGGAAGTC TGTGGCATTAGTTTCCGACGCTGGAACTCCG
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Coding sequence (CDS) from alignment at F-distichus_contig100376:100..830-

>mRNA_F-distichus_contig100376.41.1 ID=mRNA_F-distichus_contig100376.41.1|Name=mRNA_F-distichus_contig100376.41.1|organism=Fucus distichus monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at F-distichus_contig100376:100..830- (Fucus distichus monoicous)
ATGACGTCATGCAGAGCCATCAATATTCTGAGAACGGCCGACGTGATCGC
TGCGGAGGACACGCGCACGACGGGCAGGCTGCTGAAGCTGCTGGGGTTGG
AGAGAGCCGGCAAGCTTGTCAGCCATCACGAGCACAACACACGGCGCCGT
GTGCCGGAAATCCTGGACGCCGTGAGATGACGTCATGCAGAGCCATCAAT
ATTCTGAGAACGGCCGACGTGATCGCTGCGGAGGACACGCGCACGACGGG
CAGGCTGCTGAAGCTGCTGGGGTTGGAGAGAGCCGGCAAGCTTGTCAGCC
ATCACGAGCACAACACACGGCGCCGTGTGCCGGAAATCCTGGACGCCGTG
AGGAACGGGAAGTCTGTGGCATTAGTTTCCGACGCTGGAACTCCGGAACG
GGAAGTCTGTGGCATTAGTTTCCGACGCTGGAACTCCG
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