mRNA_F-distichus_contig100370.39.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100370.39.1
Unique NamemRNA_F-distichus_contig100370.39.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: D7G1H6_ECTSI (cwf21 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H6_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 VMDSHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARK 126
             MDSH+R ++K ++NRRMREAFGLG+DYAAGEAFDEE Q RK
Sbjct:  159 TMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 200
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BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A6H5KXT9_9PHAE (cwf21 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 VMDSHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARK 126
             MDSH+R ++K ++NRRMREAFGLG+DYAAGEAFDEE Q RK
Sbjct:  127 TMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 168
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BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A8K1CKR8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKR8_PYTOL)

HSP 1 Score: 55.8 bits (133), Expect = 8.890e-8
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 SHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEAR 138
            +H R  +KEEENRRM+EAFG+ ED+  GE+FD E QA+++E R
Sbjct:  123 THARAQRKEEENRRMKEAFGIAEDHVPGESFDPEMQAKRREER 165
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BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A329RLF0_9STRA (cwf21 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RLF0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.960e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 SHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEARK 141
            SH R  +KEEEN+R+++AFG+  DY AGE+FD E Q R+++ RK
Sbjct:  125 SHARQKRKEEENKRIKDAFGIATDYVAGESFDPEMQERRRQERK 168
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BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A8J5ME78_9STRA (cwf21 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ME78_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.980e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 SHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEARK 141
            SH R  +KEEEN+R+++AFG+  DY AGE+FD E Q R+++ RK
Sbjct:  125 SHARQKRKEEENKRIKDAFGIATDYVAGESFDPEMQERRRQERK 168
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BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A2D4CDA7_PYTIN (cwf21 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDA7_PYTIN)

HSP 1 Score: 52.0 bits (123), Expect = 1.930e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   10 SHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKK 129
            SH R  +KEEENRRM+EAFG+ +DYA GE+FD E   ++K
Sbjct:  123 SHARAQRKEEENRRMKEAFGIEDDYAPGESFDPELIKKRK 162
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BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A0W8DC02_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DC02_PHYNI)

HSP 1 Score: 50.8 bits (120), Expect = 2.180e-6
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 SHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEARK 141
            +H R  +KEE+N+R+++AFG+  DY AGE+FD E Q R+++ RK
Sbjct:   95 THARQKRKEEDNKRIKDAFGIATDYVAGESFDPEMQERRRQERK 138
[Close]
BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A6A3S863_9STRA (cwf21 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S863_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.790e-6
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 SHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEARK 141
            SH R  +KEEENRR+++AF +  DY AGE+FD E Q R+++ RK
Sbjct:  125 SHARQKRKEEENRRIKDAFRIATDYVAGESFDPEAQERRRQERK 168
[Close]
BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A2P4X154_9STRA (cwf21 domain-containing protein (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X154_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.790e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 VMDSHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEARK 141
            V  SH R  +KEEEN+R++ AFG+  DY AGE+FD E Q R++  RK
Sbjct:  122 VESSHARQRRKEEENKRIKNAFGIATDYVAGESFDPEMQERRRLERK 168
[Close]
BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Match: A0A6A4A5J2_9STRA (cwf21 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4A5J2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.800e-6
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 SHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEARK 141
            SH R  +KEEENRR+++AF +  DY AGE+FD E Q R+++ RK
Sbjct:  125 SHARQKRKEEENRRIKDAFRIATDYVAGESFDPEAQERRRQERK 168
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100370.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G1H6_ECTSI1.030e-1173.81cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KXT9_9PHAE1.030e-1173.81cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8K1CKR8_PYTOL8.890e-858.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329RLF0_9STRA7.960e-754.55cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A8J5ME78_9STRA7.980e-754.55cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A2D4CDA7_PYTIN1.930e-660.00cwf21 domain-containing protein n=1 Tax=Pythium in... [more]
A0A0W8DC02_PHYNI2.180e-650.00Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A6A3S863_9STRA2.790e-654.55cwf21 domain-containing protein n=4 Tax=Phytophtho... [more]
A0A2P4X154_9STRA2.790e-653.19cwf21 domain-containing protein (Fragment) n=2 Tax... [more]
A0A6A4A5J2_9STRA2.800e-654.55cwf21 domain-containing protein n=2 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100370contigF-distichus_contig100370:19..165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D7G1H6
KEGG koko:K06110,ko:K13172
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008380,GO:0008469,GO:0008757,GO:0009889,GO:0009909,GO:0009987,GO:0010219,GO:0010220,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016273,GO:0016274,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019918,GO:0031323,GO:0031326,GO:0032259,GO:0032991,GO:0034641,GO:0034969,GO:0035246,GO:0035247,GO:0036211,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043985,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048580,GO:0048583,GO:0048584,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051239,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1903506,GO:1990904,GO:2000026,GO:2000112,GO:2000241,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsKOG1869@1,KOG1869@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko04131
Exons1
Model size147
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.9417155-UTR-F-distichus_contig100370:18..211622928923.9417155-UTR-F-distichus_contig100370:18..21Fucus distichus monoicousUTRF-distichus_contig100370 19..21 +
1690885062.6719627-UTR-F-distichus_contig100370:18..211690885062.6719627-UTR-F-distichus_contig100370:18..21Fucus distichus monoicousUTRF-distichus_contig100370 19..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.960045-CDS-F-distichus_contig100370:21..1651622928923.960045-CDS-F-distichus_contig100370:21..165Fucus distichus monoicousCDSF-distichus_contig100370 22..165 +
1690885062.7348356-CDS-F-distichus_contig100370:21..1651690885062.7348356-CDS-F-distichus_contig100370:21..165Fucus distichus monoicousCDSF-distichus_contig100370 22..165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100370.39.1prot_F-distichus_contig100370.39.1Fucus distichus monoicouspolypeptideF-distichus_contig100370 22..165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100370.39.1

>prot_F-distichus_contig100370.39.1 ID=prot_F-distichus_contig100370.39.1|Name=mRNA_F-distichus_contig100370.39.1|organism=Fucus distichus monoicous|type=polypeptide|length=48bp
MDSHVRGMQKEEENRRMREAFGLGEDYAAGEAFDEETQARKKEARKM*
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mRNA from alignment at F-distichus_contig100370:19..165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100370.39.1 ID=mRNA_F-distichus_contig100370.39.1|Name=mRNA_F-distichus_contig100370.39.1|organism=Fucus distichus monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at F-distichus_contig100370:19..165+ (Fucus distichus monoicous)
GTGATGGATTCCCACGTGCGCGGCATGCAGAAGGAGGAGGAAAATCGCCG
CATGCGAGAGGCGTTCGGGCTGGGGGAGGACTATGCAGCCGGGGAGGCGT
TCGACGAGGAGACTCAGGCGCGGAAAAAAGAGGCTCGCAAAATGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig100370:19..165+

>mRNA_F-distichus_contig100370.39.1 ID=mRNA_F-distichus_contig100370.39.1|Name=mRNA_F-distichus_contig100370.39.1|organism=Fucus distichus monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at F-distichus_contig100370:19..165+ (Fucus distichus monoicous)
ATGGATTCCCACGTGCGCGGCATGCAGAAGGAGGAGGAAAATCGCCGCAT
GCGAGAGGCGTTCGGGCTGGGGGAGGACTATGCAGCCGGGGAGGCGTTCG
ACGAGGAGACTCAGGCGCGGAAAAAAGAGGCTCGCAAAATGTGAATGGAT
TCCCACGTGCGCGGCATGCAGAAGGAGGAGGAAAATCGCCGCATGCGAGA
GGCGTTCGGGCTGGGGGAGGACTATGCAGCCGGGGAGGCGTTCGACGAGG
AGACTCAGGCGCGGAAAAAAGAGGCTCGCAAAATGTGA
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