mRNA_F-distichus_contig1003.32.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1003.32.1
Unique NamemRNA_F-distichus_contig1003.32.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A482V1I8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1I8_9ARCH)

HSP 1 Score: 66.2 bits (160), Expect = 2.810e-12
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   94 IFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTG 198
            ++DVETGEC+HTLLGHTAEIVSL+FDT GQRI+TG
Sbjct:   19 LWDVETGECVHTLLGHTAEIVSLDFDTQGQRIITG 53
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A0W8D668_PHYNI (1-phosphatidylinositol 3-phosphate 5-kinase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D668_PHYNI)

HSP 1 Score: 66.6 bits (161), Expect = 6.920e-12
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   94 IFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTGSFD 207
            ++DVETG+ LHTL GHTAEIVSLNFDT G+RI+TGSFD
Sbjct:    7 LWDVETGQELHTLFGHTAEIVSLNFDTQGERIITGSFD 44
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A0P1AZC6_PLAHL (Wd domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZC6_PLAHL)

HSP 1 Score: 66.6 bits (161), Expect = 5.980e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   94 IFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTGSFD 207
            ++DVETG+ LHTL GHTAEIVSLNFDT G+RI+TGSFD
Sbjct:    7 LWDVETGQELHTLFGHTAEIVSLNFDTQGERIITGSFD 44
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A218UZ39_9PASE (Dynein assembly factor with WDR repeat domains 1 n=1 Tax=Lonchura striata domestica TaxID=299123 RepID=A0A218UZ39_9PASE)

HSP 1 Score: 57.0 bits (136), Expect = 1.950e-7
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   94 IFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTGSFDHTV 216
            ++D+E GE + TL GH+AEI++L+F+T G RI+TGSFDHTV
Sbjct:    7 LWDLEKGEEVATLNGHSAEIIALSFNTTGDRIITGSFDHTV 47
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A8C7KRA5_ONCKI (Uncharacterized protein n=2 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7KRA5_ONCKI)

HSP 1 Score: 53.5 bits (127), Expect = 5.380e-6
Identity = 24/45 (53.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   94 IFDVETGECLHTL--LGHTAEIVSLNFDTNGQRIMTGSFDHTVKV 222
            ++DV+TGE + TL  +GH+A+I+SL+F+T G +++TGSFDHTV +
Sbjct:   91 LWDVQTGEEMATLTEIGHSADIISLSFNTVGDQLVTGSFDHTVSL 135
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BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A7S0NLQ6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NLQ6_MICPS)

HSP 1 Score: 53.1 bits (126), Expect = 5.680e-6
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   94 IFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTGSFDH 210
            ++DVETG  + TL GHTAEIVSL F+T+G  I+TG FDH
Sbjct:    7 LWDVETGTEVCTLAGHTAEIVSLCFNTSGDTIVTGGFDH 45
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A8C5SVK3_LATLA (Uncharacterized protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SVK3_LATLA)

HSP 1 Score: 52.4 bits (124), Expect = 1.080e-5
Identity = 21/40 (52.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   94 IFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTGSFDHT 213
            ++D++ GE +  L GH+AEI++L+F+T G +I+TGSFDHT
Sbjct:    7 LWDIQNGEEVVRLTGHSAEIIALSFNTTGDKIITGSFDHT 46
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A6A6BAS1_9PEZI (Utp12 domain-containing protein n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BAS1_9PEZI)

HSP 1 Score: 52.8 bits (125), Expect = 1.400e-5
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   79 EPDDSIFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTGSFDHTVKV 222
            +PD  I+ V+TG+ L TL GH A + SL F  NG  I++GS+DHTV++
Sbjct:  448 DPDIHIWSVQTGQLLDTLSGHEAPVSSLAFAPNGGNIVSGSWDHTVRI 495
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: K2SQI5_MACPH (Utp12 domain-containing protein n=8 Tax=Botryosphaeriaceae TaxID=45131 RepID=K2SQI5_MACPH)

HSP 1 Score: 51.6 bits (122), Expect = 3.550e-5
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   79 EPDDSIFDVETGECLHTLLGHTAEIVSLNFDTNGQRIMTGSFDHTVKV 222
            +PD  I+ V+TG+ L TL GH A +  L F  NG  I++GS+DHTV++
Sbjct:  446 DPDIHIWSVQTGQLLDTLSGHEAPVACLAFAPNGGNIVSGSWDHTVRI 493
[Close]
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Match: A0A5E4A6W9_MARMO (Uncharacterized protein n=1 Tax=Marmota monax TaxID=9995 RepID=A0A5E4A6W9_MARMO)

HSP 1 Score: 50.8 bits (120), Expect = 4.170e-5
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   94 IFDVETGECLHTLL--------GHTAEIVSLNFDTNGQRIMTGSFDHTVKV 222
            +++ E GE + TL         GH AEI+SL FDT+G RI+TGSFDHTV V
Sbjct:    7 LWNTEDGEEMCTLTVCRCVGVSGHLAEIISLAFDTSGNRIITGSFDHTVAV 57
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1003.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A482V1I8_9ARCH2.810e-1282.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A0W8D668_PHYNI6.920e-1278.951-phosphatidylinositol 3-phosphate 5-kinase n=1 Ta... [more]
A0A0P1AZC6_PLAHL5.980e-1178.95Wd domain-containing protein n=1 Tax=Plasmopara ha... [more]
A0A218UZ39_9PASE1.950e-760.98Dynein assembly factor with WDR repeat domains 1 n... [more]
A0A8C7KRA5_ONCKI5.380e-653.33Uncharacterized protein n=2 Tax=Oncorhynchus kisut... [more]
A0A7S0NLQ6_MICPS5.680e-664.10Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8C5SVK3_LATLA1.080e-552.50Uncharacterized protein n=1 Tax=Laticauda laticaud... [more]
A0A6A6BAS1_9PEZI1.400e-550.00Utp12 domain-containing protein n=1 Tax=Aplosporel... [more]
K2SQI5_MACPH3.550e-547.92Utp12 domain-containing protein n=8 Tax=Botryospha... [more]
A0A5E4A6W9_MARMO4.170e-552.94Uncharacterized protein n=1 Tax=Marmota monax TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1003contigF-distichus_contig1003:16354..17352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.2232764-CDS-F-distichus_contig1003:16353..165731622928923.2232764-CDS-F-distichus_contig1003:16353..16573Fucus distichus monoicousCDSF-distichus_contig1003 16354..16573 +
1690885061.9790275-CDS-F-distichus_contig1003:16353..165731690885061.9790275-CDS-F-distichus_contig1003:16353..16573Fucus distichus monoicousCDSF-distichus_contig1003 16354..16573 +
1622928923.241384-CDS-F-distichus_contig1003:17227..173521622928923.241384-CDS-F-distichus_contig1003:17227..17352Fucus distichus monoicousCDSF-distichus_contig1003 17228..17352 +
1690885062.0036263-CDS-F-distichus_contig1003:17227..173521690885062.0036263-CDS-F-distichus_contig1003:17227..17352Fucus distichus monoicousCDSF-distichus_contig1003 17228..17352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1003.32.1prot_F-distichus_contig1003.32.1Fucus distichus monoicouspolypeptideF-distichus_contig1003 16354..17352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1003.32.1

>prot_F-distichus_contig1003.32.1 ID=prot_F-distichus_contig1003.32.1|Name=mRNA_F-distichus_contig1003.32.1|organism=Fucus distichus monoicous|type=polypeptide|length=115bp
NIFNHAISASAPRAGGLCAPALSPTPEPDDSIFDVETGECLHTLLGHTAE
IVSLNFDTNGQRIMTGSFDHTVKVWDVRNGRCAHTLAGHHGEISSTQFNY
SSDLCISGSIDRTCK
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mRNA from alignment at F-distichus_contig1003:16354..17352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1003.32.1 ID=mRNA_F-distichus_contig1003.32.1|Name=mRNA_F-distichus_contig1003.32.1|organism=Fucus distichus monoicous|type=mRNA|length=999bp|location=Sequence derived from alignment at F-distichus_contig1003:16354..17352+ (Fucus distichus monoicous)
AATATTTTCAACCACGCCATTTCCGCTTCTGCTCCACGGGCGGGTGGGCT
GTGTGCGCCTGCGCTGTCTCCCACCCCTGAACCCGACGACAGTATTTTTG
ACGTGGAGACCGGCGAGTGTCTCCACACGCTCTTGGGGCACACGGCCGAG
ATCGTGTCTCTCAACTTCGACACTAACGGCCAGCGTATCATGACGGGCTC
CTTCGACCACACCGTTAAAGGTTCGCGATAATATCAAGGCGTTCTTTCAA
CAAGACGGAAGAAGGCATCCTGACGTAAGAAATGACTTCTTTGAACCCCC
CTCCTAACACATCTCCCCACCCAAAAAAAAAAAGCTCATTGATGAGGGAG
ATGTCAAGTAATTCTTGAGCGTTTCGTACGCAGAACTTGAACTCGAACGG
AGAAACCTCCCCCATCCCGCCATCCCCCCGAGGTACAGCTTTGATCATAT
TTATACTCTCACTATTGATAGCTCACGTCACGAAAGCCCATTATTATAGG
CTTCGAAAGAGCCTACTTGGCATGCGAGGAGAGCCCGCCGTGAGTGCTTC
ATGCTTTGCACGTTTACCACAGCTGAGTGATCATCAACGTTCAAATCATA
CCTGCTAAACCCGCCCCATCAGCTTCGGTTCGTTAAATTCAAGTTCTATT
TGAAGCCATACAGCGAGGAATGACTAGTCGAATCAGTCATTCCTACGCAC
GCTGCGCGATACAACTAGTATTGTAATATTGTGGCCTTCCAGTATAATAT
GTTCTTCATTGAACGTCTTGCCCTCTACCAGTATCTCGTACTTCGTCATT
GTCTCGCCGTCTTTCGCCGTCATCTCGCATTCGTTGTTGGATCGTCGATC
GTCTGTCGTCTATTGTCGGCGCAGTCTGGGACGTGCGCAACGGGCGGTGC
GCGCACACCCTTGCGGGTCATCACGGCGAAATCTCGAGCACGCAGTTCAA
CTACTCCTCGGACCTGTGCATCAGTGGCTCGATCGACCGGACGTGCAAG
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Coding sequence (CDS) from alignment at F-distichus_contig1003:16354..17352+

>mRNA_F-distichus_contig1003.32.1 ID=mRNA_F-distichus_contig1003.32.1|Name=mRNA_F-distichus_contig1003.32.1|organism=Fucus distichus monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at F-distichus_contig1003:16354..17352+ (Fucus distichus monoicous)
AATATTTTCAACCACGCCATTTCCGCTTCTGCTCCACGGGCGGGTGGGCT
GTGTGCGCCTGCGCTGTCTCCCACCCCTGAACCCGACGACAGTATTTTTG
ACGTGGAGACCGGCGAGTGTCTCCACACGCTCTTGGGGCACACGGCCGAG
ATCGTGTCTCTCAACTTCGACACTAACGGCCAGCGTATCATGACGGGCTC
CTTCGACCACACCGTTAAAGAATATTTTCAACCACGCCATTTCCGCTTCT
GCTCCACGGGCGGGTGGGCTGTGTGCGCCTGCGCTGTCTCCCACCCCTGA
ACCCGACGACAGTATTTTTGACGTGGAGACCGGCGAGTGTCTCCACACGC
TCTTGGGGCACACGGCCGAGATCGTGTCTCTCAACTTCGACACTAACGGC
CAGCGTATCATGACGGGCTCCTTCGACCACACCGTTAAAGTCTGGGACGT
GCGCAACGGGCGGTGCGCGCACACCCTTGCGGGTCATCACGGCGAAATCT
CGAGCACGCAGTTCAACTACTCCTCGGACCTGTGCATCAGTGGCTCGATC
GACCGGACGTGCAAGTCTGGGACGTGCGCAACGGGCGGTGCGCGCACACC
CTTGCGGGTCATCACGGCGAAATCTCGAGCACGCAGTTCAACTACTCCTC
GGACCTGTGCATCAGTGGCTCGATCGACCGGACGTGCAAG
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