mRNA_F-distichus_contig100254.30.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100254.30.1
Unique NamemRNA_F-distichus_contig100254.30.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.420e-18
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 EADRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNE-GRVVKLRLTGNNLRGE 174
            + DRDAL+ALYRATGG+ W E Q W T+A L  W+GV VN+ GRVVKL+L  NNL GE
Sbjct:    3 QTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGE 60          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.500e-16
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 EADRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNE-GRVVKLRLTGNNLRGE 174
            + DRDAL+ LYRATGG+ W E+Q W T+A L  W+GV VN+ GRVVKL+L  NNL GE
Sbjct:    3 QTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGE 60          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.210e-16
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 EADRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNE-GRVVKLRLTGNNLRG 171
            + DRDAL+A+YRATGG+ W   Q W T++ L  W+GV+VN+ GRVVKL L  NNL G
Sbjct:    3 QTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEG 59          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.610e-16
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 MEADRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNE-GRVVKLRLTGNNLRG 171
            M  DR AL+AL+ ATGG  W +   W T+APL +WYGV VN+ GRVVKL L  NNL+G
Sbjct:    9 MSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKG 66          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A6L7VX36_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7VX36_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 1.180e-15
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   10 DRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNEGRVVKLRLTGNNLRGE 174
            DR+AL A+Y ATGGD W   +GW T APL +WYG+ +N GRV+ L L  NNL GE
Sbjct:   66 DREALEAIYHATGGDEWKHNEGWLTKAPLEDWYGLRLNNGRVIYLELNDNNLTGE 120          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.960e-15
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 EADRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVN-EGRVVKLRLTGNNLRG 171
            + DR+AL+ALY ATGG  W  K+ W T A LS+WYGV V+ +GRVV L L GNNL+G
Sbjct:   98 QPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQG 154          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A6L7VUL4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7VUL4_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 9.110e-15
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   10 DRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNEGRVVKLRLTGNNLRGE 174
            DR+AL A Y ATGGD W    GW T+APL +WYG+ V+ GRV  L L  NNL+GE
Sbjct:   53 DREALEAFYHATGGDEWKNNDGWLTDAPLKDWYGIGVSRGRVFFLGLEDNNLKGE 107          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A6H5KCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.170e-14
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   10 DRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNE-GRVVKLRLTGNNLRG 171
            DR+ALI L+R+ GG  W  +  W T+  L+ WYGV VN+ GRVVKLR+  NNLRG
Sbjct:    5 DREALITLFRSAGGARWFRRNNWLTSDGLATWYGVEVNDQGRVVKLRVDANNLRG 59          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: A0A352FEI0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-14
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    4 EADRDALIALYRATGGDAWVEKQGWR-TNAPLSEWYGVSVNEGRVVKLRLTGNNLRG 171
            +ADRDAL+ALY ATGG AW     W  T A +  WYGV+V  G+V K++LT NNL G
Sbjct:   36 QADRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTVTSGKVTKVKLTANNLTG 92          
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.230e-14
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    4 EADRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVN-EGRVVKLRLTGNNLRG 171
            + DR AL+ALY ATGG  W   Q W T+A LS+W+GV VN +GRVVKL L  NNLRG
Sbjct:   73 QTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRG 129          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100254.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK91_9PHAE5.420e-1863.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBY3_ECTSI2.500e-1662.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K3C2_9PHAE3.210e-1657.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D6_9PHAE5.610e-1658.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6L7VX36_9GAMM1.180e-1558.18Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6H5KVC7_9PHAE2.960e-1559.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6L7VUL4_9GAMM9.110e-1558.18Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6H5KCH6_9PHAE1.170e-1456.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A352FEI0_9BACT1.200e-1456.14Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
D8LFK2_ECTSI1.230e-1461.40Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100254contigF-distichus_contig100254:358..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog2880.D8LBY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.160597-CDS-F-distichus_contig100254:357..5461622928923.160597-CDS-F-distichus_contig100254:357..546Fucus distichus monoicousCDSF-distichus_contig100254 358..546 +
1690885061.963424-CDS-F-distichus_contig100254:357..5461690885061.963424-CDS-F-distichus_contig100254:357..546Fucus distichus monoicousCDSF-distichus_contig100254 358..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100254.30.1prot_F-distichus_contig100254.30.1Fucus distichus monoicouspolypeptideF-distichus_contig100254 358..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100254.30.1

>prot_F-distichus_contig100254.30.1 ID=prot_F-distichus_contig100254.30.1|Name=mRNA_F-distichus_contig100254.30.1|organism=Fucus distichus monoicous|type=polypeptide|length=63bp
MEADRDALIALYRATGGDAWVEKQGWRTNAPLSEWYGVSVNEGRVVKLRL
TGNNLRGESSLQ*
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mRNA from alignment at F-distichus_contig100254:358..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100254.30.1 ID=mRNA_F-distichus_contig100254.30.1|Name=mRNA_F-distichus_contig100254.30.1|organism=Fucus distichus monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at F-distichus_contig100254:358..546+ (Fucus distichus monoicous)
ATGGAAGCAGATCGCGATGCTCTTATTGCCTTATATCGGGCTACAGGCGG GGATGCCTGGGTAGAGAAGCAGGGCTGGCGCACGAACGCTCCTCTTTCAG AATGGTATGGGGTTAGCGTCAACGAAGGCCGCGTGGTTAAACTGCGTTTA ACTGGCAACAACCTCCGAGGTGAGAGTTCCCTCCAGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig100254:358..546+

>mRNA_F-distichus_contig100254.30.1 ID=mRNA_F-distichus_contig100254.30.1|Name=mRNA_F-distichus_contig100254.30.1|organism=Fucus distichus monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at F-distichus_contig100254:358..546+ (Fucus distichus monoicous)
ATGGAAGCAGATCGCGATGCTCTTATTGCCTTATATCGGGCTACAGGCGG
GGATGCCTGGGTAGAGAAGCAGGGCTGGCGCACGAACGCTCCTCTTTCAG
AATGGTATGGGGTTAGCGTCAACGAAGGCCGCGTGGTTAAACTGCGTTTA
ACTGGCAACAACCTCCGAGGTGAGAGTTCCCTCCAGTAAATGGAAGCAGA
TCGCGATGCTCTTATTGCCTTATATCGGGCTACAGGCGGGGATGCCTGGG
TAGAGAAGCAGGGCTGGCGCACGAACGCTCCTCTTTCAGAATGGTATGGG
GTTAGCGTCAACGAAGGCCGCGTGGTTAAACTGCGTTTAACTGGCAACAA
CCTCCGAGGTGAGAGTTCCCTCCAGTAA
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