mRNA_F-distichus_contig100199.21.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100199.21.1
Unique NamemRNA_F-distichus_contig100199.21.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.120e-15
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT EE                A  Q HLPIREGGLG+TSS  I+ +A++   ALV  +
Sbjct:  171 LRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 278
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.570e-15
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LR+    RL HLLRT+ PSIT  AA  +D+L+ WA++ I+ G  A   G+PT EE                A  Q HLPIREGGLG+TSS  I+ +A++   ALV  +
Sbjct:  320 LRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 427
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.490e-15
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT EE                A  Q HLPIREGGLG+TSS  I+ +A++   ALV  +
Sbjct:  472 LRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 579
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5KFL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.030e-13
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  +
Sbjct:   46 LRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSK 154
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.610e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  +
Sbjct:  138 LRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSK 246
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5KDI2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.490e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  +
Sbjct:  138 LRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSK 246
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.570e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  +
Sbjct:  472 LRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSK 580
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.640e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  +
Sbjct:  472 LRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSK 580
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.660e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 276
            LRL    RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  +
Sbjct:  320 LRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSK 428
[Close]
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Match: R1DAT8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DAT8_EMIHU)

HSP 1 Score: 68.9 bits (167), Expect = 2.030e-11
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 LRLPATSR---LSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGLPTPEEALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRRRCL 288
            L LPA SR   L+  LR +PPS+T  AA  +D L++ AL  ++ G    A G    E A +QA LP++ GG+GLTS+  I+  A+IG  ALV G  R L
Sbjct:  236 LPLPALSRNTTLTFFLRAMPPSVTLPAAERHDELIDAALYKLVGGARVGAAGTRW-ERACKQARLPVKMGGMGLTSAVDIREPAWIGTWALVAGPMRHL 333
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100199.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K541_9PHAE2.120e-1544.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE4.570e-1543.52Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE6.490e-1544.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KFL6_9PHAE5.030e-1339.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLD7_9PHAE2.610e-1239.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDI2_9PHAE4.490e-1239.45Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JCM0_9PHAE4.570e-1239.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE4.640e-1239.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE4.660e-1239.45Reverse transcriptase domain-containing protein n=... [more]
R1DAT8_EMIHU2.030e-1144.44Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100199contigF-distichus_contig100199:1548..1916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog2903.EOD07991
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2EPMD@1,2SST1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.085447-CDS-F-distichus_contig100199:1547..17121622928921.085447-CDS-F-distichus_contig100199:1547..1712Fucus distichus monoicousCDSF-distichus_contig100199 1548..1712 +
1690885061.1377366-CDS-F-distichus_contig100199:1547..17121690885061.1377366-CDS-F-distichus_contig100199:1547..1712Fucus distichus monoicousCDSF-distichus_contig100199 1548..1712 +
1622928921.095701-CDS-F-distichus_contig100199:1763..19161622928921.095701-CDS-F-distichus_contig100199:1763..1916Fucus distichus monoicousCDSF-distichus_contig100199 1764..1916 +
1690885061.147146-CDS-F-distichus_contig100199:1763..19161690885061.147146-CDS-F-distichus_contig100199:1763..1916Fucus distichus monoicousCDSF-distichus_contig100199 1764..1916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100199.21.1prot_F-distichus_contig100199.21.1Fucus distichus monoicouspolypeptideF-distichus_contig100199 1548..1916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100199.21.1

>prot_F-distichus_contig100199.21.1 ID=prot_F-distichus_contig100199.21.1|Name=mRNA_F-distichus_contig100199.21.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
LRLPATSRLSHLLRTVPPSITCQAAANYDALVEWALASIIAGDEAAATGL
PTPEEALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRRRCLRPGE
PSIPS*
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mRNA from alignment at F-distichus_contig100199:1548..1916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100199.21.1 ID=mRNA_F-distichus_contig100199.21.1|Name=mRNA_F-distichus_contig100199.21.1|organism=Fucus distichus monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at F-distichus_contig100199:1548..1916+ (Fucus distichus monoicous)
TTGCGTCTACCTGCCACTTCTCGCCTCTCACATCTACTCCGAACAGTCCC
GCCCTCCATCACATGCCAAGCCGCAGCAAATTATGACGCGTTGGTGGAGT
GGGCGCTGGCGTCTATTATAGCCGGTGACGAAGCCGCCGCGACAGGGCTA
CCAACGCCAGAGGAAGTAGCCCACGACCCCACTGTGTGCCAAAAACAGAC
CTACCTGGGGCACGAGGCCCTACGGCAGGCCCACCTGCCAATCCGAGAAG
GCGGCCTTGGGCTTACCAGCAGCAGCTCCATCAAAGGCGCGGCATATATC
GGCTGCCACGCCCTGGTCCTGGGGCGTCGTCGCTGCCTCCGCCCGGGGGA
ACCTTCCATCCCTTCTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig100199:1548..1916+

>mRNA_F-distichus_contig100199.21.1 ID=mRNA_F-distichus_contig100199.21.1|Name=mRNA_F-distichus_contig100199.21.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig100199:1548..1916+ (Fucus distichus monoicous)
TTGCGTCTACCTGCCACTTCTCGCCTCTCACATCTACTCCGAACAGTCCC
GCCCTCCATCACATGCCAAGCCGCAGCAAATTATGACGCGTTGGTGGAGT
GGGCGCTGGCGTCTATTATAGCCGGTGACGAAGCCGCCGCGACAGGGCTA
CCAACGCCAGAGGAATTGCGTCTACCTGCCACTTCTCGCCTCTCACATCT
ACTCCGAACAGTCCCGCCCTCCATCACATGCCAAGCCGCAGCAAATTATG
ACGCGTTGGTGGAGTGGGCGCTGGCGTCTATTATAGCCGGTGACGAAGCC
GCCGCGACAGGGCTACCAACGCCAGAGGAAGCCCTACGGCAGGCCCACCT
GCCAATCCGAGAAGGCGGCCTTGGGCTTACCAGCAGCAGCTCCATCAAAG
GCGCGGCATATATCGGCTGCCACGCCCTGGTCCTGGGGCGTCGTCGCTGC
CTCCGCCCGGGGGAACCTTCCATCCCTTCTTGAGCCCTACGGCAGGCCCA
CCTGCCAATCCGAGAAGGCGGCCTTGGGCTTACCAGCAGCAGCTCCATCA
AAGGCGCGGCATATATCGGCTGCCACGCCCTGGTCCTGGGGCGTCGTCGC
TGCCTCCGCCCGGGGGAACCTTCCATCCCTTCTTGA
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