mRNA_F-distichus_contig100118.16.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100118.16.1
Unique NamemRNA_F-distichus_contig100118.16.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100118.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100118contigF-distichus_contig100118:685..1034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.7799444-UTR-F-distichus_contig100118:684..6981622928920.7799444-UTR-F-distichus_contig100118:684..698Fucus distichus monoicousUTRF-distichus_contig100118 685..698 +
1690885060.7729664-UTR-F-distichus_contig100118:684..6981690885060.7729664-UTR-F-distichus_contig100118:684..698Fucus distichus monoicousUTRF-distichus_contig100118 685..698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.7939305-CDS-F-distichus_contig100118:698..10341622928920.7939305-CDS-F-distichus_contig100118:698..1034Fucus distichus monoicousCDSF-distichus_contig100118 699..1034 +
1690885060.8065646-CDS-F-distichus_contig100118:698..10341690885060.8065646-CDS-F-distichus_contig100118:698..1034Fucus distichus monoicousCDSF-distichus_contig100118 699..1034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100118.16.1prot_F-distichus_contig100118.16.1Fucus distichus monoicouspolypeptideF-distichus_contig100118 699..1034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100118.16.1

>prot_F-distichus_contig100118.16.1 ID=prot_F-distichus_contig100118.16.1|Name=mRNA_F-distichus_contig100118.16.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp
MKKNNDVDVDDACLARRSSHPRKARSEIAISARVSDATPASQRGGRGTEL
IRSVSASNSRGISRFRSRSTSANLSLSVNQRIPTSPPVVMAEAAALASSS
CLSPNVVGASTD
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mRNA from alignment at F-distichus_contig100118:685..1034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100118.16.1 ID=mRNA_F-distichus_contig100118.16.1|Name=mRNA_F-distichus_contig100118.16.1|organism=Fucus distichus monoicous|type=mRNA|length=350bp|location=Sequence derived from alignment at F-distichus_contig100118:685..1034+ (Fucus distichus monoicous)
GTCCCGGCGGTGGTATGAAAAAGAACAACGACGTGGATGTTGACGACGCA
TGCCTCGCGCGGCGCTCTTCACACCCGCGCAAGGCGCGCAGCGAGATAGC
GATCTCGGCAAGGGTGTCCGACGCCACGCCGGCAAGCCAGCGAGGCGGCC
GCGGTACCGAACTCATTCGAAGTGTCAGCGCAAGCAACAGTCGTGGCATT
AGCCGCTTCCGAAGCCGAAGCACCAGCGCGAACCTAAGCTTGAGCGTGAA
CCAGCGTATCCCCACCTCGCCCCCCGTCGTTATGGCGGAGGCCGCCGCCT
TAGCATCATCATCGTGTTTGTCTCCCAATGTGGTGGGAGCTTCGACTGAT
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Coding sequence (CDS) from alignment at F-distichus_contig100118:685..1034+

>mRNA_F-distichus_contig100118.16.1 ID=mRNA_F-distichus_contig100118.16.1|Name=mRNA_F-distichus_contig100118.16.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig100118:685..1034+ (Fucus distichus monoicous)
ATGAAAAAGAACAACGACGTGGATGTTGACGACGCATGCCTCGCGCGGCG
CTCTTCACACCCGCGCAAGGCGCGCAGCGAGATAGCGATCTCGGCAAGGG
TGTCCGACGCCACGCCGGCAAGCCAGCGAGGCGGCCGCGGTACCGAACTC
ATTCGAAGTGTCAGCGCAAGCAACAGTCGTGGCATTAGCCGCTTCCGAAG
CCGAAGCACCAGCGCGAACCTAAGCTTGAGCGTGAACCAGCGTATCCCCA
CCTCGCCCCCCGTCGTTATGGCGGAGGCCGCCGCCTTAGCATCATCATCG
TGTTTGTCTCCCAATGTGGTGGGAGCTTCGACTGATATGAAAAAGAACAA
CGACGTGGATGTTGACGACGCATGCCTCGCGCGGCGCTCTTCACACCCGC
GCAAGGCGCGCAGCGAGATAGCGATCTCGGCAAGGGTGTCCGACGCCACG
CCGGCAAGCCAGCGAGGCGGCCGCGGTACCGAACTCATTCGAAGTGTCAG
CGCAAGCAACAGTCGTGGCATTAGCCGCTTCCGAAGCCGAAGCACCAGCG
CGAACCTAAGCTTGAGCGTGAACCAGCGTATCCCCACCTCGCCCCCCGTC
GTTATGGCGGAGGCCGCCGCCTTAGCATCATCATCGTGTTTGTCTCCCAA
TGTGGTGGGAGCTTCGACTGAT
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