mRNA_F-distichus_contig100087.13.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100087.13.1
Unique NamemRNA_F-distichus_contig100087.13.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: H8GL66_METAL (Methionyl-tRNA formyltransferase n=1 Tax=Methylomicrobium album BG8 TaxID=686340 RepID=H8GL66_METAL)

HSP 1 Score: 55.8 bits (133), Expect = 8.150e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 HLLVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFYN 141
            H+++ +  EWGVT+LQAD EMDAGD+W S NF    +R  +KS+ YN
Sbjct:   89 HMIMRNDAEWGVTLLQADDEMDAGDIWTSHNFQ---TRWTTKSSIYN 132          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: A0A8J9ZBU4_BRALA (ALDH1L2 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZBU4_BRALA)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    7 LVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFYN 141
            L G + EWGVTVLQAD EMDAGD+W +  F  P++R  +KS+ Y+
Sbjct:  188 LKGGATEWGVTVLQADDEMDAGDIWATCKF--PVNRKAAKSSLYS 230          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: UPI0018F4B4D5 (hydrogenase maturation protein n=1 Tax=Paenibacillus sp. YIM B00362 TaxID=2799335 RepID=UPI0018F4B4D5)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    7 LVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFY 138
            ++  + EWGVTVLQA +EMDAGD+W S+NFS+   R  SKS  Y
Sbjct:   90 ILNGAEEWGVTVLQASEEMDAGDIWASVNFSM---RNASKSNLY 130          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: A0A2G2K3H6_9FLAO (Hydrogenase maturation protein n=1 Tax=Kordia sp. TaxID=1965332 RepID=A0A2G2K3H6_9FLAO)

HSP 1 Score: 53.9 bits (128), Expect = 3.900e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    7 LVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFY 138
            ++    EWGVTVLQAD+EMDAGD+W S NF +   R++SKS  Y
Sbjct:   90 VMSQKTEWGVTVLQADEEMDAGDIWSSNNFEM---RSISKSNLY 130          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: A0A8H3WWJ3_GIGMA (Methylenetetrahydrofolate dehydrogenase NADP+/methenyltetrahydrofolate cyclohydrolase (Fragment) n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3WWJ3_GIGMA)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    7 LVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFYN 141
            ++    EWGVT+L+ADKEMDAG +W S NF VP  + ++K+  YN
Sbjct:  428 IIDKKDEWGVTILEADKEMDAGAIWASENFXVP--KAITKTHLYN 470          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: A0A2E3SNW9_9BACT (Hydrogenase maturation protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2E3SNW9_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   25 EWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFY 138
            EWGVTVLQAD+EMDAGD+W S NF +   R +SKS  Y
Sbjct:   96 EWGVTVLQADEEMDAGDIWSSHNFQM---RPISKSCLY 130          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: UPI001CFDD686 (enoyl-CoA hydratase-related protein n=1 Tax=Microseira wollei TaxID=467598 RepID=UPI001CFDD686)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   25 EWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFYN 141
            EWGVT+LQAD+EMDAGD+W S  F +   RT SKS+ YN
Sbjct:   97 EWGVTLLQADEEMDAGDIWSSKTFPM---RTASKSSIYN 132          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: A0A0F7JUS0_9GAMM (Hydrogenase maturation protein n=1 Tax=Sedimenticola thiotaurini TaxID=1543721 RepID=A0A0F7JUS0_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    7 LVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFY 138
            ++   PEWGVTVLQA+ EMDAGD+W ++NF +   R +SK++ Y
Sbjct:   90 ILRGEPEWGVTVLQANAEMDAGDIWATVNFPM---RAVSKASLY 130          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: UPI001F03DE96 (hydrogenase maturation protein n=1 Tax=Streptomyces sp. MUM 203J TaxID=2791990 RepID=UPI001F03DE96)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 24/35 (68.57%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 HLLVGSSPEWGVTVLQADKEMDAGDVWESINFSVP 105
            H L   + EWGVTVLQAD+EMDAGDVW S  F VP
Sbjct:   88 HALHEGADEWGVTVLQADEEMDAGDVWASAGFRVP 122          
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Match: A0A397URI6_9GLOM (Tetrahydrofolate dehydrogenase/cyclohydrolase n=4 Tax=Gigaspora TaxID=4873 RepID=A0A397URI6_9GLOM)

HSP 1 Score: 53.5 bits (127), Expect = 5.340e-7
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    7 LVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFYN 141
            ++    EWGVTVL+ADKEMDAG +W S NF VP  + ++K+  YN
Sbjct:  435 IIDKKDEWGVTVLEADKEMDAGAIWASENFLVP--KAITKTHLYN 477          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100087.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H8GL66_METAL8.150e-853.19Methionyl-tRNA formyltransferase n=1 Tax=Methylomi... [more]
A0A8J9ZBU4_BRALA1.520e-755.56ALDH1L2 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
UPI0018F4B4D52.850e-756.82hydrogenase maturation protein n=1 Tax=Paenibacill... [more]
A0A2G2K3H6_9FLAO3.900e-756.82Hydrogenase maturation protein n=1 Tax=Kordia sp. ... [more]
A0A8H3WWJ3_GIGMA5.330e-751.11Methylenetetrahydrofolate dehydrogenase NADP+/meth... [more]
A0A2E3SNW9_9BACT5.330e-765.79Hydrogenase maturation protein n=1 Tax=Bacteroidet... [more]
UPI001CFDD6865.330e-764.10enoyl-CoA hydratase-related protein n=1 Tax=Micros... [more]
A0A0F7JUS0_9GAMM5.330e-752.27Hydrogenase maturation protein n=1 Tax=Sedimentico... [more]
UPI001F03DE965.330e-768.57hydrogenase maturation protein n=1 Tax=Streptomyce... [more]
A0A397URI6_9GLOM5.340e-753.33Tetrahydrofolate dehydrogenase/cyclohydrolase n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100087contigF-distichus_contig100087:1736..1876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928918.0790248-CDS-F-distichus_contig100087:1735..18761622928918.0790248-CDS-F-distichus_contig100087:1735..1876Fucus distichus monoicousCDSF-distichus_contig100087 1736..1876 -
1690885060.3671825-CDS-F-distichus_contig100087:1735..18761690885060.3671825-CDS-F-distichus_contig100087:1735..1876Fucus distichus monoicousCDSF-distichus_contig100087 1736..1876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100087.13.1prot_F-distichus_contig100087.13.1Fucus distichus monoicouspolypeptideF-distichus_contig100087 1736..1876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100087.13.1

>prot_F-distichus_contig100087.13.1 ID=prot_F-distichus_contig100087.13.1|Name=mRNA_F-distichus_contig100087.13.1|organism=Fucus distichus monoicous|type=polypeptide|length=47bp
HLLVGSSPEWGVTVLQADKEMDAGDVWESINFSVPLSRTLSKSAFYN
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mRNA from alignment at F-distichus_contig100087:1736..1876-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100087.13.1 ID=mRNA_F-distichus_contig100087.13.1|Name=mRNA_F-distichus_contig100087.13.1|organism=Fucus distichus monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at F-distichus_contig100087:1736..1876- (Fucus distichus monoicous)
CACTTACTTGTAGGGTCTTCGCCGGAGTGGGGTGTTACGGTGCTGCAGGC GGACAAGGAGATGGACGCCGGAGACGTTTGGGAGTCGATCAACTTTTCCG TTCCTCTTTCTCGTACGCTCAGCAAGTCGGCCTTTTACAAC
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Coding sequence (CDS) from alignment at F-distichus_contig100087:1736..1876-

>mRNA_F-distichus_contig100087.13.1 ID=mRNA_F-distichus_contig100087.13.1|Name=mRNA_F-distichus_contig100087.13.1|organism=Fucus distichus monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at F-distichus_contig100087:1736..1876- (Fucus distichus monoicous)
CACTTACTTGTAGGGTCTTCGCCGGAGTGGGGTGTTACGGTGCTGCAGGC
GGACAAGGAGATGGACGCCGGAGACGTTTGGGAGTCGATCAACTTTTCCG
TTCCTCTTTCTCGTACGCTCAGCAAGTCGGCCTTTTACAACCACTTACTT
GTAGGGTCTTCGCCGGAGTGGGGTGTTACGGTGCTGCAGGCGGACAAGGA
GATGGACGCCGGAGACGTTTGGGAGTCGATCAACTTTTCCGTTCCTCTTT
CTCGTACGCTCAGCAAGTCGGCCTTTTACAAC
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