mRNA_F-distichus_contig100070.10.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100070.10.1
Unique NamemRNA_F-distichus_contig100070.10.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100070.10.1 vs. uniprot
Match: D7FRB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB7_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 7.350e-42
Identity = 86/112 (76.79%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:    1 TETAARTRLSLYFALCVKSRQMLAGLLEAYVTAFPAAQAGLMAELPLLARAAAKGFGEPGVVGLMGDAPPGAKTLVLAMLDLLVPKDVNKPSPELVAAVRRLRQTRVAAVVE 336
            T  AAR RLSLYFALCVKSR ML+GLLEAYVTA PAA+ GL AELPLLARAAAKGFGE GVVGL+  +P GAK L L MLDLLVP+D NKPSPE+VAAVRRLR+TR+ A  E
Sbjct:  891 TAAAARVRLSLYFALCVKSRPMLSGLLEAYVTAIPAAKDGLKAELPLLARAAAKGFGEAGVVGLVAASPVGAKPLALLMLDLLVPRDTNKPSPEMVAAVRRLRETRLLAEAE 1002
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BLAST of mRNA_F-distichus_contig100070.10.1 vs. uniprot
Match: A0A2I0J633_PUNGR (Symplekin_C domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J633_PUNGR)

HSP 1 Score: 53.1 bits (126), Expect = 1.020e-5
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   13 ARTRLSLYFALCVKSRQMLAGLLEAYVTAFPAAQAGLMAELPLLARAAAKGFGEPGVVGLMGDAPPGAKTLVLAMLDLLVPKDVNKPSPELVAAVRRLRQTRV 321
            A+  +SL+FALC K   +L  + E Y  A    +  +   +P+L RA   G   P ++ ++ D P G++ L+  +L +L   D   PSPELVAAV+ L +T++
Sbjct:  618 AQRLISLFFALCTKKPNLLYLVFETYGQAPKTVKQAVHRHIPILIRAL--GSSHPELLYVISDPPQGSENLLTLVLQILT--DETIPSPELVAAVKHLYETKL 716
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BLAST of mRNA_F-distichus_contig100070.10.1 vs. uniprot
Match: A0A6P8CC35_PUNGR (LOW QUALITY PROTEIN: uncharacterized protein LOC116186944 n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8CC35_PUNGR)

HSP 1 Score: 53.1 bits (126), Expect = 1.050e-5
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:   13 ARTRLSLYFALCVKSRQMLAGLLEAYVTAFPAAQAGLMAELPLLARAAAKGFGEPGVVGLMGDAPPGAKTLVLAMLDLLVPKDVNKPSPELVAAVRRLRQTRVAAV 330
            A+  +SL+FALC K   +L  + E Y  A    +  +   +P+L RA   G   P ++ ++ D P G++ L+  +L +L   D   PSPELVAAV+ L +T++  V
Sbjct:  992 AQRLISLFFALCTKKPNLLYLVFETYGQAPKTVKQAVHRHIPILIRAL--GSSHPELLYVISDPPQGSENLLTLVLQILT--DETIPSPELVAAVQHLYETKLKDV 1093
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BLAST of mRNA_F-distichus_contig100070.10.1 vs. uniprot
Match: UPI001CB9045F (uncharacterized protein LOC122606709 isoform X1 n=3 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9045F)

HSP 1 Score: 51.6 bits (122), Expect = 3.630e-5
Identity = 33/105 (31.43%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    7 TAARTRLSLYFALCVKSRQMLAGLLEAYVTAFPAAQAGLMAELPLLARAAAKGFGEPGVVGLMGDAPPGAKTLVLAMLDLLVPKDVNKPSPELVAAVRRLRQTRV 321
            T A+  +SLYFALC K   +   LL  Y     AA+  +  ++P L R        P ++ ++ D P G++ L++ ++  L   D   PSP+L+A +R+L +T++
Sbjct:  948 TDAQRCMSLYFALCTKKHSLFRQLLIVYKNMSKAAKQAITVQIPKLVRTIGP---SPQLLEIIADPPAGSENLLMQVVQTLT--DGAVPSPDLLATIRKLYETKL 1047
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BLAST of mRNA_F-distichus_contig100070.10.1 vs. uniprot
Match: A0A2U1QKL7_ARTAN (HEAT repeat-containing protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QKL7_ARTAN)

HSP 1 Score: 50.8 bits (120), Expect = 6.770e-5
Identity = 33/103 (32.04%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   13 ARTRLSLYFALCVKSRQMLAGLLEAYVTAFPAAQAGLMAELPLLARAAAKGFGEPGVVGLMGDAPPGAKTLVLAMLDLLVPKDVNKPSPELVAAVRRLRQTRV 321
            A+  +SLYFALC K   +   LL  Y     AA+  +  ++P L R        P ++ ++ D P G++ L++ ++  L   D   PSP L+A +R+L  TR+
Sbjct:  963 AQRCMSLYFALCTKKHSLFRQLLIVYKNMSKAAKQAISVQIPKLVRTIGA---SPQLLEIIADPPAGSENLLMQVVQTLT--DGAVPSPNLIATIRKLYDTRL 1060
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100070.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FRB7_ECTSI7.350e-4276.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2I0J633_PUNGR1.020e-534.95Symplekin_C domain-containing protein n=1 Tax=Puni... [more]
A0A6P8CC35_PUNGR1.050e-534.91LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
UPI001CB9045F3.630e-531.43uncharacterized protein LOC122606709 isoform X1 n=... [more]
A0A2U1QKL7_ARTAN6.770e-532.04HEAT repeat-containing protein n=2 Tax=Artemisia a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100070contigF-distichus_contig100070:1529..1873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue3.7e-36
Seed eggNOG ortholog2880.D7FRB7
KEGG koko:K06100
KEGG Pathwayko03015,ko04530,map03015,map04530
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA polyadenylation
EggNOG OGsKOG1895@1,KOG1895@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.4631574-CDS-F-distichus_contig100070:1528..18731622928917.4631574-CDS-F-distichus_contig100070:1528..1873Fucus distichus monoicousCDSF-distichus_contig100070 1529..1873 +
1690885059.9365098-CDS-F-distichus_contig100070:1528..18731690885059.9365098-CDS-F-distichus_contig100070:1528..1873Fucus distichus monoicousCDSF-distichus_contig100070 1529..1873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100070.10.1prot_F-distichus_contig100070.10.1Fucus distichus monoicouspolypeptideF-distichus_contig100070 1529..1873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100070.10.1

>prot_F-distichus_contig100070.10.1 ID=prot_F-distichus_contig100070.10.1|Name=mRNA_F-distichus_contig100070.10.1|organism=Fucus distichus monoicous|type=polypeptide|length=115bp
TETAARTRLSLYFALCVKSRQMLAGLLEAYVTAFPAAQAGLMAELPLLAR
AAAKGFGEPGVVGLMGDAPPGAKTLVLAMLDLLVPKDVNKPSPELVAAVR
RLRQTRVAAVVEEVP
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mRNA from alignment at F-distichus_contig100070:1529..1873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100070.10.1 ID=mRNA_F-distichus_contig100070.10.1|Name=mRNA_F-distichus_contig100070.10.1|organism=Fucus distichus monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at F-distichus_contig100070:1529..1873+ (Fucus distichus monoicous)
ACGGAGACCGCAGCGAGGACCCGGCTGTCCCTCTACTTCGCTCTCTGCGT
GAAGTCGCGTCAGATGCTCGCCGGACTGCTAGAAGCCTACGTCACTGCTT
TCCCCGCCGCCCAAGCGGGGTTGATGGCAGAGCTACCACTACTTGCGAGG
GCGGCGGCGAAAGGATTCGGGGAGCCGGGGGTGGTTGGCCTGATGGGGGA
TGCGCCCCCCGGAGCCAAAACTTTAGTGCTGGCGATGCTGGATCTGCTTG
TGCCCAAGGACGTCAACAAGCCTTCGCCAGAACTGGTTGCCGCCGTGCGA
CGGCTGAGACAGACTCGAGTTGCTGCCGTGGTGGAAGAGGTACCG
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Coding sequence (CDS) from alignment at F-distichus_contig100070:1529..1873+

>mRNA_F-distichus_contig100070.10.1 ID=mRNA_F-distichus_contig100070.10.1|Name=mRNA_F-distichus_contig100070.10.1|organism=Fucus distichus monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at F-distichus_contig100070:1529..1873+ (Fucus distichus monoicous)
ACGGAGACCGCAGCGAGGACCCGGCTGTCCCTCTACTTCGCTCTCTGCGT
GAAGTCGCGTCAGATGCTCGCCGGACTGCTAGAAGCCTACGTCACTGCTT
TCCCCGCCGCCCAAGCGGGGTTGATGGCAGAGCTACCACTACTTGCGAGG
GCGGCGGCGAAAGGATTCGGGGAGCCGGGGGTGGTTGGCCTGATGGGGGA
TGCGCCCCCCGGAGCCAAAACTTTAGTGCTGGCGATGCTGGATCTGCTTG
TGCCCAAGGACGTCAACAAGCCTTCGCCAGAACTGGTTGCCGCCGTGCGA
CGGCTGAGACAGACTCGAGTTGCTGCCGTGGTGGAAGAGGTACCGACGGA
GACCGCAGCGAGGACCCGGCTGTCCCTCTACTTCGCTCTCTGCGTGAAGT
CGCGTCAGATGCTCGCCGGACTGCTAGAAGCCTACGTCACTGCTTTCCCC
GCCGCCCAAGCGGGGTTGATGGCAGAGCTACCACTACTTGCGAGGGCGGC
GGCGAAAGGATTCGGGGAGCCGGGGGTGGTTGGCCTGATGGGGGATGCGC
CCCCCGGAGCCAAAACTTTAGTGCTGGCGATGCTGGATCTGCTTGTGCCC
AAGGACGTCAACAAGCCTTCGCCAGAACTGGTTGCCGCCGTGCGACGGCT
GAGACAGACTCGAGTTGCTGCCGTGGTGGAAGAGGTACCG
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