mRNA_F-distichus_contig100047.8.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100047.8.1
Unique NamemRNA_F-distichus_contig100047.8.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: F0YLF9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLF9_AURAN)

HSP 1 Score: 89.4 bits (220), Expect = 4.140e-22
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            +DVR++NI+AAKA+ADAIRTSLGPRGMDKMIQ GDGEV+ITNDGATIL  M+V
Sbjct:   13 KDVRLSNIMAAKAIADAIRTSLGPRGMDKMIQKGDGEVLITNDGATILSTMEV 65
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: D7FKS7_ECTSI (T-complex protein 1 subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS7_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.720e-22
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            +DVR ANILAAKAVADAIRTSLGPRGMDKMIQ GDGEVVITNDGATILG MQV
Sbjct:   19 KDVRTANILAAKAVADAIRTSLGPRGMDKMIQGGDGEVVITNDGATILGQMQV 71
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A3B8M914_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3B8M914_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-20
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            +DVRI+NI+AAK VADAIRTSLGPRGMDKMIQ  DGEV+ITNDGATIL  M V
Sbjct:   32 KDVRISNIMAAKGVADAIRTSLGPRGMDKMIQKSDGEVLITNDGATILTQMNV 84
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A7R9VTH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VTH2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.540e-20
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 DVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            DVR+ANI+AAK VADA+RTSLGPRGMDKMIQ   GEV+ITNDGATIL H+QV
Sbjct:    4 DVRMANIIAAKGVADAVRTSLGPRGMDKMIQGETGEVIITNDGATILSHLQV 55
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A7S1C5Q3_9STRA (T-complex protein 1 subunit delta (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5Q3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.050e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            +DVR +NI+AAK+VADAIRTSLGPRGMDKMIQ+G GEV+ITNDGATIL HMQV
Sbjct:   27 RDVRTSNIIAAKSVADAIRTSLGPRGMDKMIQAGKGEVIITNDGATILSHMQV 79
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A482SAB4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAB4_9ARCH)

HSP 1 Score: 86.3 bits (212), Expect = 1.670e-19
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            +DVR++NI+AAKAVAD +RTSLGPRGMDKMI+ GDGEV+ITNDGATIL  +QV
Sbjct:   13 KDVRMSNIIAAKAVADTVRTSLGPRGMDKMIKRGDGEVLITNDGATILSQLQV 65
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A835YW20_9STRA (T-complex protein 1 subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW20_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.040e-19
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            +DVR++NI+AAKAVA+A+RTSLGPRGMDKMIQ GDGEV+ITNDGATIL  M V
Sbjct:   17 RDVRLSNIIAAKAVAEAVRTSLGPRGMDKMIQKGDGEVIITNDGATILSQMNV 69
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A0E9NQK9_SAICN (T-complex protein 1 subunit delta n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NQK9_SAICN)

HSP 1 Score: 88.2 bits (217), Expect = 4.180e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            Q+VR++NI AAKAVADAIRTSLGP+GMDKMIQ+G GEVVITNDGATIL HM V
Sbjct:   24 QEVRLSNITAAKAVADAIRTSLGPKGMDKMIQTGKGEVVITNDGATILKHMAV 76
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BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A7S3HSJ9_9STRA (T-complex protein 1 subunit delta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSJ9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.180e-19
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    4 DVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            DVR++NI+AAK+VADA+RTSLGPRGMDKMIQ GDGEV+ITNDGATIL  +QV
Sbjct:   25 DVRLSNIVAAKSVADAVRTSLGPRGMDKMIQKGDGEVLITNDGATILSQLQV 76
[Close]
BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Match: A0A6S9KYX5_HETAK (T-complex protein 1 subunit delta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KYX5_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 5.710e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGHMQV 159
            +DVR +NI+AAKAVADAIRTSLGPRGMDKMIQ GDGEV+ITNDGATIL  M+V
Sbjct:   16 KDVRTSNIIAAKAVADAIRTSLGPRGMDKMIQRGDGEVLITNDGATILTEMKV 68
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100047.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YLF9_AURAN4.140e-2281.13Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D7FKS7_ECTSI7.720e-2292.45T-complex protein 1 subunit delta n=2 Tax=Ectocarp... [more]
A0A3B8M914_9ACTN1.550e-2081.13Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7R9VTH2_9STRA2.540e-2080.77Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1C5Q3_9STRA3.050e-2083.02T-complex protein 1 subunit delta (Fragment) n=1 T... [more]
A0A482SAB4_9ARCH1.670e-1977.36Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A835YW20_9STRA3.040e-1979.25T-complex protein 1 subunit delta n=1 Tax=Tribonem... [more]
A0A0E9NQK9_SAICN4.180e-1983.02T-complex protein 1 subunit delta n=2 Tax=Saitoell... [more]
A0A7S3HSJ9_9STRA4.180e-1980.77T-complex protein 1 subunit delta n=1 Tax=Spumella... [more]
A0A6S9KYX5_HETAK5.710e-1983.02T-complex protein 1 subunit delta n=1 Tax=Heterosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100047contigF-distichus_contig100047:362..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog2880.D7FKS7
Preferred nameCCT4
KEGG koko:K09496,ko:K09500
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0007275,GO:0007338,GO:0007339,GO:0008037,GO:0008144,GO:0008150,GO:0009566,GO:0009653,GO:0009791,GO:0009886,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010035,GO:0010038,GO:0010171,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0017076,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0035036,GO:0035639,GO:0036094,GO:0040032,GO:0042221,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046686,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0060341,GO:0061077,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901265,GO:1901363,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0358@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.367021-CDS-F-distichus_contig100047:361..5201622928917.367021-CDS-F-distichus_contig100047:361..520Fucus distichus monoicousCDSF-distichus_contig100047 362..520 -
1690885059.8018563-CDS-F-distichus_contig100047:361..5201690885059.8018563-CDS-F-distichus_contig100047:361..520Fucus distichus monoicousCDSF-distichus_contig100047 362..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100047.8.1prot_F-distichus_contig100047.8.1Fucus distichus monoicouspolypeptideF-distichus_contig100047 362..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100047.8.1

>prot_F-distichus_contig100047.8.1 ID=prot_F-distichus_contig100047.8.1|Name=mRNA_F-distichus_contig100047.8.1|organism=Fucus distichus monoicous|type=polypeptide|length=53bp
QDVRIANILAAKAVADAIRTSLGPRGMDKMIQSGDGEVVITNDGATILGH
MQV
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mRNA from alignment at F-distichus_contig100047:362..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100047.8.1 ID=mRNA_F-distichus_contig100047.8.1|Name=mRNA_F-distichus_contig100047.8.1|organism=Fucus distichus monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at F-distichus_contig100047:362..520- (Fucus distichus monoicous)
CAGGATGTTCGCATCGCCAACATTCTCGCGGCGAAGGCGGTGGCGGACGC
GATCCGGACCAGCCTGGGCCCGAGGGGGATGGACAAGATGATCCAAAGCG
GGGACGGGGAAGTGGTGATCACAAACGACGGCGCGACCATCCTCGGACAT
ATGCAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig100047:362..520-

>mRNA_F-distichus_contig100047.8.1 ID=mRNA_F-distichus_contig100047.8.1|Name=mRNA_F-distichus_contig100047.8.1|organism=Fucus distichus monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at F-distichus_contig100047:362..520- (Fucus distichus monoicous)
CAGGATGTTCGCATCGCCAACATTCTCGCGGCGAAGGCGGTGGCGGACGC
GATCCGGACCAGCCTGGGCCCGAGGGGGATGGACAAGATGATCCAAAGCG
GGGACGGGGAAGTGGTGATCACAAACGACGGCGCGACCATCCTCGGACAT
ATGCAGGTACAGGATGTTCGCATCGCCAACATTCTCGCGGCGAAGGCGGT
GGCGGACGCGATCCGGACCAGCCTGGGCCCGAGGGGGATGGACAAGATGA
TCCAAAGCGGGGACGGGGAAGTGGTGATCACAAACGACGGCGCGACCATC
CTCGGACATATGCAGGTA
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