mRNA_F-distichus_contig100.4.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig100.4.1
Unique NamemRNA_F-distichus_contig100.4.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig100contigF-distichus_contig100:1268..1773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.0693903-UTR-F-distichus_contig100:1267..14191622928917.0693903-UTR-F-distichus_contig100:1267..1419Fucus distichus monoicousUTRF-distichus_contig100 1268..1419 +
1690885058.874107-UTR-F-distichus_contig100:1267..14191690885058.874107-UTR-F-distichus_contig100:1267..1419Fucus distichus monoicousUTRF-distichus_contig100 1268..1419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.0841758-CDS-F-distichus_contig100:1419..17731622928917.0841758-CDS-F-distichus_contig100:1419..1773Fucus distichus monoicousCDSF-distichus_contig100 1420..1773 +
1690885058.942345-CDS-F-distichus_contig100:1419..17731690885058.942345-CDS-F-distichus_contig100:1419..1773Fucus distichus monoicousCDSF-distichus_contig100 1420..1773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig100.4.1prot_F-distichus_contig100.4.1Fucus distichus monoicouspolypeptideF-distichus_contig100 1420..1773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig100.4.1

>prot_F-distichus_contig100.4.1 ID=prot_F-distichus_contig100.4.1|Name=mRNA_F-distichus_contig100.4.1|organism=Fucus distichus monoicous|type=polypeptide|length=118bp
MELATLREIKDTPHEQYFGVCEKWGRLAYLFAPDDLLIMAGGSGHTCAVV
RVVPPFFIYGAFPSGQGRGSVGSSIGRWRGKSPAIPSSLCLPGAPLVWYK
FVLVPNALHPPTWCERLK
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mRNA from alignment at F-distichus_contig100:1268..1773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig100.4.1 ID=mRNA_F-distichus_contig100.4.1|Name=mRNA_F-distichus_contig100.4.1|organism=Fucus distichus monoicous|type=mRNA|length=506bp|location=Sequence derived from alignment at F-distichus_contig100:1268..1773+ (Fucus distichus monoicous)
AGTGGATGGTGTAAGGGCATGTCGGCTCTGAGAGTAAAACATTTGTAAAT
ATCGCCTGCATGATAGGCCATCGTCGCGTGGGAGTTTGAGTAGAAATCCT
TTTGAGCAGGTTAGAGACTCTTCCAAGTTATCTAAGAGGGCGCTTAGGGG
CGATGGAGCTGGCAACCTTGCGCGAGATTAAAGACACACCCCACGAACAA
TATTTCGGAGTGTGTGAAAAGTGGGGCCGTTTGGCTTACTTGTTTGCCCC
AGATGATTTGCTCATTATGGCGGGTGGAAGTGGTCATACGTGCGCTGTAG
TAAGAGTAGTCCCCCCCTTTTTCATCTACGGTGCCTTTCCGTCGGGCCAA
GGGCGTGGAAGCGTAGGGTCGTCGATTGGCCGATGGAGAGGAAAATCACC
GGCGATACCTTCCTCTCTGTGCCTCCCCGGGGCACCTCTGGTTTGGTACA
AATTTGTTCTCGTACCCAATGCTTTGCACCCGCCCACCTGGTGTGAGCGC
CTTAAA
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Coding sequence (CDS) from alignment at F-distichus_contig100:1268..1773+

>mRNA_F-distichus_contig100.4.1 ID=mRNA_F-distichus_contig100.4.1|Name=mRNA_F-distichus_contig100.4.1|organism=Fucus distichus monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at F-distichus_contig100:1268..1773+ (Fucus distichus monoicous)
ATGGAGCTGGCAACCTTGCGCGAGATTAAAGACACACCCCACGAACAATA
TTTCGGAGTGTGTGAAAAGTGGGGCCGTTTGGCTTACTTGTTTGCCCCAG
ATGATTTGCTCATTATGGCGGGTGGAAGTGGTCATACGTGCGCTGTAGTA
AGAGTAGTCCCCCCCTTTTTCATCTACGGTGCCTTTCCGTCGGGCCAAGG
GCGTGGAAGCGTAGGGTCGTCGATTGGCCGATGGAGAGGAAAATCACCGG
CGATACCTTCCTCTCTGTGCCTCCCCGGGGCACCTCTGGTTTGGTACAAA
TTTGTTCTCGTACCCAATGCTTTGCACCCGCCCACCTGGTGTGAGCGCCT
TAAAATGGAGCTGGCAACCTTGCGCGAGATTAAAGACACACCCCACGAAC
AATATTTCGGAGTGTGTGAAAAGTGGGGCCGTTTGGCTTACTTGTTTGCC
CCAGATGATTTGCTCATTATGGCGGGTGGAAGTGGTCATACGTGCGCTGT
AGTAAGAGTAGTCCCCCCCTTTTTCATCTACGGTGCCTTTCCGTCGGGCC
AAGGGCGTGGAAGCGTAGGGTCGTCGATTGGCCGATGGAGAGGAAAATCA
CCGGCGATACCTTCCTCTCTGTGCCTCCCCGGGGCACCTCTGGTTTGGTA
CAAATTTGTTCTCGTACCCAATGCTTTGCACCCGCCCACCTGGTGTGAGC
GCCTTAAA
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