mRNA_F-distichus_contig10.2.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 157 bits (398), Expect = 3.820e-41 Identity = 85/187 (45.45%), Postives = 126/187 (67.38%), Query Frame = 2
Query: 2 AENVSALSFQNNSFFCPTGKYGFTEDSELIEDSDTICRMSVVCSLCTDPQCEDHTD--IVMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGGTNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIGGAVAVCVVAIIVAALGVAYLVGVVDR 556
A N++ +F++N+++C +G+YG+ + E S T CR VVCS C CED+ +V+++ VP+CE GV+ +G+ G+TL L+L+ G++RTS +S V +CY+EEAC+GGT+VS YC EGY G YCA CDEGY SG+ +SC+ C G + + IG +VA+ VA++ AL +A LV VVD
Sbjct: 527 AGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGT-CRFGVVCSSCA-ASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDE 711
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 152 bits (385), Expect = 9.480e-41 Identity = 79/166 (47.59%), Postives = 108/166 (65.06%), Query Frame = 2
Query: 2 AENVSALSFQNNSFFCPTGKYGFTEDSELIED--SDTICRMSVVCSLCTDPQCEDHTDI-----VMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGGTNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIG 478
AEN + ++F N+F+C G+YG D+ +++ +DT CR+ VVCS C CED + V+++ VP C+ V GVN +GN G TL+TLDL SG++RTS +S + EC+REEAC+GG+ YCA GY G YCAAC+EGY SG YSC SC G + + IG
Sbjct: 300 AENFTDVTFAENTFYCAPGQYG--SDAHFLDEEVADT-CRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSCKSCGGDNATSAIG 462
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 120 bits (302), Expect = 3.100e-28 Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 2
Query: 32 NNSFFCPTGKYGFTE---DSELIEDSDTICRMSVVCSLCT---DPQCEDHTDIVMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGGTNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIGGAVAVCVVAIIVAALGVAYLVGVVDRPIS 565
+N F+C G++G TE D +L +D CR VCS C D + E ++V D T+P CE P+G T G TL TL+++ GF+R+S S ++ EC+ ++AC GG+ V YCAEGY GPYCA C GY G+ +C SC G K + + V A + AL +A +V +V R +S
Sbjct: 513 DNDFYCEEGEFG-TETLIDKDLFGGADQ-CRFGRVCSRCASECDSELESAAELV-DAETLPTCEEAPEGSRTTRR-GATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSAL-------VFAAAIGALALAAVVALVSRLVS 685
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.710e-26 Identity = 69/179 (38.55%), Postives = 105/179 (58.66%), Query Frame = 2
Query: 35 NSFFCPTGKYGFTE---DSELIEDSDTICRMSVVCSLCTDPQCE---DHTDIVMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGGTNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIGGAVAVCVVAIIVAALGVAYLVGVVD 553
N F+C G++G TE D +L +D CR VCS C +C + T ++D T+P CE P+G T G TL TL+++ GF+R+S S ++ EC+ ++AC GG+ + YC+EGY GPYCA C GY G+ +C SC G+ K + + A A+ ++A+ + V+ LV VV+
Sbjct: 490 NDFYCEEGEFG-TETLIDKDLFGGADQ-CRFRRVCSRCAS-ECGSELERTAELVDADTLPTCETAPEGSRTTRR-GATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSALVFAAAIGLLALAAVMVLVSRLVSVVE 664
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 114 bits (286), Expect = 3.850e-26 Identity = 56/153 (36.60%), Postives = 89/153 (58.17%), Query Frame = 2
Query: 20 LSFQNNSFFCPTGKYGFTEDSELIEDSDTICRMSVVCSLCTDPQCEDHTDIVMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGGTNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIG 478
++F +N+ CP G+Y + +++E D CR + C+ C+ + + M ++T+PVC + +G + + G T+ TLDL G++RTS +S V ECY AC GGT+ YCA+GY GPYC+ C +GY G Y C+ C G+ + +G
Sbjct: 269 VTFASNTLNCPLGEYAYDKEAE-----DDSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSS-GTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVG 415
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 111 bits (277), Expect = 6.500e-25 Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 2
Query: 20 LSFQNNSFFCPTGKYGFTEDSELIEDSDTICRMSVVCSLCTDPQCEDHTDIVMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGGTNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIG 478
++F +N+ CP G+ + +++E D CR + C+ C+ + + M ++T+PVC +G + + G T+ TLDL G++RTS +S V ECY AC GGT+ YCA+GY GPYC+ C +GY G Y C+ C G+ + +G
Sbjct: 510 VAFASNTLNCPPGENAYDKEAE-----DDSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSS-GTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVG 656
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 5.280e-19 Identity = 63/181 (34.81%), Postives = 92/181 (50.83%), Query Frame = 2
Query: 5 ENVSALSFQNNSFFCPTGKY-GFTEDSELIEDSDTICRMSVVCSLCTDPQCEDHTDIVMDETTVPVC-ELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGG-TNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIGGAVAVCVVAIIVAALGVAYL 538
E+ +SF N F CP+G + G+ ++L E C+ + V DP VP C +L+ + G TLETL + +G++R + EV CY +AC+GG T S YC EGY GPYCA C EGY + ++C +C SD GI A A+ VV +++ V+Y+
Sbjct: 1082 ESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADP------------LLVPTCTDLLEHSTSSDGRD--TLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGPYCAICSEGYSAQMSFTCRTC--SDNAGGIALAAALAVVGLVLLVAVVSYV 1246
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 2.420e-18 Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 2
Query: 5 ENVSALSFQNNSFFCPTGKYGFTEDSELIEDSDTICRMSVVCSLCTDPQCEDHTDIVMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGG-TNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIGGAVAVCVVAIIVAALGVAYLVGVVDR 556
E + A +F +N CP+G + D R S VCS C +C D V D + VP C + PD TGNT +ETL + G++R + + + C+ +AC+GG T + YCAEGY GPYCA C +G+ ++C++C SD A + VA+ + I LG+ +LV +V R
Sbjct: 798 EGIEACTFADNDAVCPSGFFLDFVDGH---------RYSDVCSGCE--ECSDCG--VADSSEVPTCTITPDHTQSTGNT---IETLSIDPGYWRATPSTIIILACHNSDACLGGETGAADYCAEGYEGPYCAVCSDGFAESLSFTCSNC--SDGKATVVALVALPTMVI----LGLIFLVYMVSR 960
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 3.340e-16 Identity = 63/179 (35.20%), Postives = 90/179 (50.28%), Query Frame = 2
Query: 8 NVSALSFQNNSFFCPTGKYGFTEDSELIEDSDTICR-MSVVCSLCTDPQCEDHTDIVMDETTVPVCELVPDGVNPTGNTGMTLETLDLMSGFFRTSNKSGEVSECYREEACMGG-TNVSLYCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIGGAVAVCVVAIIVAALGVAYL 538
+++ SF N F CP G + S ++ + IC C C + + + P+C V D G +TL+TL + GF+R S S EV CY +AC+GG T S YC EGY GPYC C +GY ++C+ C S+ AG G AVAV V+A+++ L VA +
Sbjct: 982 SITNASFDGNGFDCPAGTFRNVTGS--VDHFEAICNGCETTCDGC----------VFAEGSLAPICTEVMDHSTSDGG-NVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFACSKC--SENSAG-GIAVAV-VLALLIVFLAVAVV 1143
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 1.140e-13 Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 2
Query: 242 GMTLETLDLMSGFFRTSNKSGEVSECYREEACMGGTNVSL---YCAEGYAGPYCAACDEGYGSGF*YSCNSCQGSDKWAGIGGAVAVCVVAIIVAALGVAYLVGVVD------RPISERS 574
G TL +L + G++R+S +S + +C AC+G T +S YC EGY GPYC C EG+G G +C+SC+G+ I +V +++ L V YLVG +D R +S RS
Sbjct: 890 GATLASLPIREGYWRSSRESLSIHQCVHHTACVGATQISSAQDYCGEGYQGPYCTVCTEGFGRGAGNTCHSCEGTKSRLLIAAGSLFALVILLLVILAVVYLVGGLDAVEGLRRSLSTRS 1009 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10.2.1 >prot_F-distichus_contig10.2.1 ID=prot_F-distichus_contig10.2.1|Name=mRNA_F-distichus_contig10.2.1|organism=Fucus distichus monoicous|type=polypeptide|length=105bp MSVVCSLCTDPQCEDHTDIVMDETTVPVCELVPDGVNPTGNTGMTLETLDback to top mRNA from alignment at F-distichus_contig10:21466..22488- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10.2.1 ID=mRNA_F-distichus_contig10.2.1|Name=mRNA_F-distichus_contig10.2.1|organism=Fucus distichus monoicous|type=mRNA|length=1023bp|location=Sequence derived from alignment at F-distichus_contig10:21466..22488- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10:21466..22488- >mRNA_F-distichus_contig10.2.1 ID=mRNA_F-distichus_contig10.2.1|Name=mRNA_F-distichus_contig10.2.1|organism=Fucus distichus monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at F-distichus_contig10:21466..22488- (Fucus distichus monoicous)back to top |